HEADER IMMUNE SYSTEM/DNA 14-MAR-23 8GIN TITLE STRUCTURE OF TERNARY COMPLEX OF MOUSE CGAS WITH DSDNA AND BOUND ATP: TITLE 2 WITH 10MM MG2+ AND 0.015MM MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PALINDROMIC DNA18; COMPND 11 CHAIN: E, F, I, J; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NHMT MCAT WT; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: ORDERED FROM IDT KEYWDS TRANSFERASE-DNA COMPLEX, CGAS, ATP AND DIVALENT METAL, IMMUNE SYSTEM, KEYWDS 2 IMMUNE SYSTEM-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,J.SOHN REVDAT 2 29-MAY-24 8GIN 1 JRNL REVDAT 1 22-MAY-24 8GIN 0 JRNL AUTH S.WU,S.B.GABELLI,J.SOHN JRNL TITL THE STRUCTURAL BASIS FOR 2'-5'/3'-5'-CGAMP SYNTHESIS BY JRNL TITL 2 CGAS. JRNL REF NAT COMMUN V. 15 4012 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38740774 JRNL DOI 10.1038/S41467-024-48365-3 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 28710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7800 - 7.3100 1.00 2716 144 0.1202 0.1465 REMARK 3 2 7.3100 - 5.8200 1.00 2733 148 0.1829 0.2121 REMARK 3 3 5.8100 - 5.0800 1.00 2729 123 0.1654 0.2203 REMARK 3 4 5.0800 - 4.6200 1.00 2736 139 0.1529 0.2104 REMARK 3 5 4.6200 - 4.2900 1.00 2693 177 0.1500 0.2025 REMARK 3 6 4.2900 - 4.0400 1.00 2721 136 0.1547 0.1892 REMARK 3 7 4.0400 - 3.8400 1.00 2751 155 0.1726 0.1990 REMARK 3 8 3.8400 - 3.6700 1.00 2690 144 0.1873 0.2552 REMARK 3 9 3.6700 - 3.5300 1.00 2739 125 0.1930 0.2181 REMARK 3 10 3.5300 - 3.4100 0.99 2711 161 0.1890 0.2328 REMARK 3 11 3.4100 - 3.3000 0.99 2728 141 0.2015 0.2747 REMARK 3 12 3.3000 - 3.2100 1.00 2679 149 0.1976 0.2379 REMARK 3 13 3.2100 - 3.1200 1.00 2784 117 0.2272 0.2545 REMARK 3 14 3.1200 - 3.0500 1.00 2700 146 0.2507 0.3316 REMARK 3 15 3.0500 - 2.9800 1.00 2707 139 0.2619 0.3250 REMARK 3 16 2.9800 - 2.9100 1.00 2745 143 0.2587 0.3030 REMARK 3 17 2.9100 - 2.8600 1.00 2733 150 0.2662 0.3205 REMARK 3 18 2.8600 - 2.8000 1.00 2722 154 0.2853 0.3349 REMARK 3 19 2.8000 - 2.7500 0.77 2078 117 0.3143 0.3743 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : 1.087 NULL REMARK 3 CHIRALITY : 0.054 1151 REMARK 3 PLANARITY : 0.009 1084 REMARK 3 DIHEDRAL : 23.880 1470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 148:506) OR (CHAIN A AND RESSEQ REMARK 3 602:602) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8958 26.7283 20.3705 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.3316 REMARK 3 T33: 0.3668 T12: -0.0004 REMARK 3 T13: -0.0277 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.4214 L22: 1.8232 REMARK 3 L33: 1.2808 L12: -0.2770 REMARK 3 L13: -0.3488 L23: -0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0790 S13: 0.1931 REMARK 3 S21: -0.0182 S22: 0.0371 S23: 0.1245 REMARK 3 S31: -0.1269 S32: -0.0622 S33: -0.0460 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 148:506) OR (CHAIN C AND RESSEQ REMARK 3 602:602) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6039 -8.3364 18.7272 REMARK 3 T TENSOR REMARK 3 T11: 0.3534 T22: 0.4344 REMARK 3 T33: 0.4289 T12: 0.0445 REMARK 3 T13: 0.0483 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.7267 L22: 2.8714 REMARK 3 L33: 1.5832 L12: -1.0806 REMARK 3 L13: 0.3590 L23: -0.6028 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: -0.1742 S13: -0.0799 REMARK 3 S21: -0.0737 S22: 0.0714 S23: -0.4206 REMARK 3 S31: 0.1154 S32: 0.1520 S33: 0.0333 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN E AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7722 22.8576 31.6025 REMARK 3 T TENSOR REMARK 3 T11: 0.5345 T22: 0.8067 REMARK 3 T33: 0.5221 T12: -0.1427 REMARK 3 T13: 0.0540 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 3.2485 L22: 2.3988 REMARK 3 L33: 2.5429 L12: -0.7531 REMARK 3 L13: 1.1199 L23: 1.9378 REMARK 3 S TENSOR REMARK 3 S11: 0.2098 S12: -1.0041 S13: 0.0400 REMARK 3 S21: 0.6465 S22: 0.1885 S23: -0.0701 REMARK 3 S31: 0.3453 S32: 0.2904 S33: -0.5259 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN F AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5163 23.4270 32.5288 REMARK 3 T TENSOR REMARK 3 T11: 0.8035 T22: 0.8544 REMARK 3 T33: 0.4934 T12: -0.0717 REMARK 3 T13: -0.0694 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 2.3482 L22: 3.5518 REMARK 3 L33: 2.0857 L12: -0.7595 REMARK 3 L13: 0.7157 L23: -0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.3393 S12: -0.8346 S13: -0.1904 REMARK 3 S21: 0.6460 S22: -0.0345 S23: 0.1298 REMARK 3 S31: 0.4715 S32: 0.8489 S33: -0.3452 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN I AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0897 -8.6686 17.7321 REMARK 3 T TENSOR REMARK 3 T11: 0.6435 T22: 0.5410 REMARK 3 T33: 0.5629 T12: -0.0677 REMARK 3 T13: -0.0355 T23: 0.1021 REMARK 3 L TENSOR REMARK 3 L11: 3.4880 L22: 2.5891 REMARK 3 L33: 2.1570 L12: -0.8911 REMARK 3 L13: -1.2678 L23: -0.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.2907 S12: 0.0127 S13: -0.4424 REMARK 3 S21: -0.2764 S22: 0.2483 S23: 0.1720 REMARK 3 S31: 0.4568 S32: -0.4479 S33: -0.4701 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN J AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4466 -6.6492 18.6173 REMARK 3 T TENSOR REMARK 3 T11: 0.6082 T22: 0.6321 REMARK 3 T33: 0.5126 T12: -0.0323 REMARK 3 T13: 0.0811 T23: 0.1431 REMARK 3 L TENSOR REMARK 3 L11: 3.6118 L22: 3.4800 REMARK 3 L33: 2.1407 L12: -0.2601 REMARK 3 L13: 0.7671 L23: 0.0444 REMARK 3 S TENSOR REMARK 3 S11: 0.2043 S12: 0.2107 S13: -0.2844 REMARK 3 S21: -0.2500 S22: 0.2636 S23: 0.2330 REMARK 3 S31: -0.2862 S32: -0.5880 S33: -0.4521 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.891 REMARK 200 MONOCHROMATOR : HORIZONTAL BOUNCE SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28710 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 32% MPD, WITH REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.69600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.13000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.35450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.13000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.69600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.35450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 PRO A 147 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 GLY A 245 REMARK 465 LEU A 507 REMARK 465 GLY C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 PRO C 147 REMARK 465 LYS C 240 REMARK 465 ARG C 241 REMARK 465 ILE C 242 REMARK 465 PRO C 243 REMARK 465 ARG C 244 REMARK 465 GLY C 245 REMARK 465 ASN C 246 REMARK 465 LEU C 252 REMARK 465 GLU C 253 REMARK 465 GLY C 254 REMARK 465 GLU C 255 REMARK 465 LEU C 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC I 8 O3' DC I 8 C3' -0.037 REMARK 500 DT I 12 O3' DT I 12 C3' -0.040 REMARK 500 DG J 11 O3' DG J 11 C3' -0.039 REMARK 500 DT J 12 O3' DT J 12 C3' -0.037 REMARK 500 DC J 14 O3' DC J 14 C3' -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC I 8 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -143.99 19.69 REMARK 500 SER A 207 -61.54 67.59 REMARK 500 ARG A 222 -78.41 120.67 REMARK 500 ILE A 223 111.19 138.29 REMARK 500 GLU A 224 -127.87 -136.66 REMARK 500 LEU A 225 124.24 67.47 REMARK 500 LYS A 353 51.35 -117.64 REMARK 500 GLN A 359 -73.76 -26.38 REMARK 500 ASN A 377 56.76 -146.99 REMARK 500 ASP A 434 76.42 -112.90 REMARK 500 TRP A 440 48.79 -140.79 REMARK 500 LEU A 465 89.07 -156.87 REMARK 500 ASN A 499 26.30 -145.35 REMARK 500 GLN C 183 -89.84 -96.09 REMARK 500 GLU C 186 85.23 -66.31 REMARK 500 SER C 207 -62.77 76.24 REMARK 500 PRO C 221 -74.64 -100.18 REMARK 500 ARG C 222 44.99 -65.07 REMARK 500 GLU C 230 18.30 58.81 REMARK 500 TRP C 331 -76.12 -111.37 REMARK 500 PRO C 344 173.12 -58.11 REMARK 500 LYS C 353 51.05 -95.59 REMARK 500 ASN C 356 -146.12 -82.38 REMARK 500 SER C 357 -113.89 -83.93 REMARK 500 GLN C 359 -33.24 -39.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE2 REMARK 620 2 ASP A 213 OD1 69.6 REMARK 620 3 ASP A 307 OD2 76.4 84.6 REMARK 620 4 ATP A 601 O2A 88.0 77.4 159.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 99.1 REMARK 620 3 ATP A 601 O3G 76.2 132.8 REMARK 620 4 ATP A 601 O2B 150.1 74.7 86.7 REMARK 620 5 ATP A 601 O2A 82.5 67.7 65.2 68.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 115.0 REMARK 620 3 CYS A 385 SG 106.5 122.1 REMARK 620 4 CYS A 392 SG 101.3 101.4 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 199 OG REMARK 620 2 GLU C 211 OE1 130.2 REMARK 620 3 ASP C 213 OD2 141.7 86.5 REMARK 620 4 ATP C 601 O3G 83.5 74.7 122.2 REMARK 620 5 ATP C 601 O2B 81.5 135.1 76.8 79.6 REMARK 620 6 ATP C 601 O2A 132.1 74.4 59.9 62.5 61.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE2 REMARK 620 2 ASP C 213 OD1 68.3 REMARK 620 3 ASP C 307 OD2 67.8 76.3 REMARK 620 4 ATP C 601 O2A 85.2 80.3 149.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 378 NE2 REMARK 620 2 CYS C 384 SG 111.2 REMARK 620 3 CYS C 385 SG 108.9 122.6 REMARK 620 4 CYS C 392 SG 100.1 100.3 111.2 REMARK 620 N 1 2 3 DBREF 8GIN A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIN C 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIN E 1 18 PDB 8GIN 8GIN 1 18 DBREF 8GIN F 1 18 PDB 8GIN 8GIN 1 18 DBREF 8GIN I 1 18 PDB 8GIN 8GIN 1 18 DBREF 8GIN J 1 18 PDB 8GIN 8GIN 1 18 SEQADV 8GIN GLY A 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIN THR A 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIN GLY A 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIN GLY C 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIN THR C 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIN GLY C 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 A 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 A 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 A 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 A 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 A 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 A 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 A 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 A 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 A 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 A 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 A 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 A 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 A 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 A 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 A 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 A 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 A 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 A 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 A 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 A 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 A 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 A 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 A 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 A 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 A 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 C 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 C 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 C 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 C 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 C 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 C 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 C 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 C 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 C 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 C 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 C 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 C 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 C 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 C 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 C 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 C 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 C 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 C 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 C 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 C 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 C 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 C 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 C 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 C 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 C 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 C 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 C 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 C 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 E 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 E 18 DC DA DG DA DT SEQRES 1 F 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 F 18 DC DA DG DA DT SEQRES 1 I 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 I 18 DC DA DG DA DT SEQRES 1 J 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 J 18 DC DA DG DA DT HET ATP A 601 31 HET ZN A 602 1 HET MN A 603 1 HET MG A 604 1 HET ATP C 601 31 HET ZN C 602 1 HET MN C 603 1 HET MG C 604 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 8 ZN 2(ZN 2+) FORMUL 9 MN 2(MN 2+) FORMUL 10 MG 2(MG 2+) FORMUL 15 HOH *21(H2 O) HELIX 1 AA1 ASP A 148 ARG A 158 1 11 HELIX 2 AA2 LYS A 160 GLN A 183 1 24 HELIX 3 AA3 ASN A 246 HIS A 250 5 5 HELIX 4 AA4 SER A 258 GLU A 276 1 19 HELIX 5 AA5 PRO A 319 LYS A 323 5 5 HELIX 6 AA6 GLY A 333 ARG A 342 1 10 HELIX 7 AA7 PHE A 358 GLU A 361 5 4 HELIX 8 AA8 PHE A 367 ASN A 376 1 10 HELIX 9 AA9 CYS A 393 PHE A 412 1 20 HELIX 10 AB1 GLN A 413 PHE A 418 5 6 HELIX 11 AB2 CYS A 419 ASP A 434 1 16 HELIX 12 AB3 GLN A 436 ARG A 443 5 8 HELIX 13 AB4 ASN A 444 THR A 462 1 19 HELIX 14 AB5 ASP A 482 ASN A 498 1 17 HELIX 15 AB6 PHE A 501 LYS A 506 5 6 HELIX 16 AB7 LYS C 149 ARG C 158 1 10 HELIX 17 AB8 LYS C 160 GLN C 183 1 24 HELIX 18 AB9 PRO C 247 PHE C 251 5 5 HELIX 19 AC1 SER C 258 GLU C 276 1 19 HELIX 20 AC2 PRO C 319 LYS C 323 5 5 HELIX 21 AC3 GLY C 333 GLU C 343 1 11 HELIX 22 AC4 PHE C 358 GLU C 361 5 4 HELIX 23 AC5 PHE C 367 ASN C 377 1 11 HELIX 24 AC6 CYS C 393 PHE C 412 1 20 HELIX 25 AC7 GLN C 413 ASP C 416 5 4 HELIX 26 AC8 CYS C 419 ASP C 434 1 16 HELIX 27 AC9 GLN C 436 ARG C 443 5 8 HELIX 28 AD1 ASN C 444 GLU C 463 1 20 HELIX 29 AD2 ASP C 482 ASN C 498 1 17 HELIX 30 AD3 ASN C 499 GLY C 500 5 2 HELIX 31 AD4 PHE C 501 LYS C 506 5 6 SHEET 1 AA1 7 GLU A 193 THR A 197 0 SHEET 2 AA1 7 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA1 7 GLU A 303 SER A 314 1 O GLU A 313 N LEU A 218 SHEET 4 AA1 7 PHE A 345 PRO A 349 -1 O LEU A 347 N LEU A 312 SHEET 5 AA1 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 LEU A 236 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 GLN A 226 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 AA2 5 GLU A 193 THR A 197 0 SHEET 2 AA2 5 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA2 5 GLU A 303 SER A 314 1 O GLU A 313 N LEU A 218 SHEET 4 AA2 5 ALA A 293 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 AA2 5 ASP A 281 VAL A 284 -1 N ASP A 281 O ARG A 299 SHEET 1 AA3 2 LEU A 252 GLU A 253 0 SHEET 2 AA3 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 AA4 7 GLU C 193 THR C 197 0 SHEET 2 AA4 7 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA4 7 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA4 7 PHE C 345 PRO C 349 -1 O PHE C 345 N SER C 314 SHEET 5 AA4 7 TRP C 363 SER C 366 -1 O ARG C 364 N VAL C 348 SHEET 6 AA4 7 PHE C 234 LYS C 238 -1 N TYR C 235 O TRP C 363 SHEET 7 AA4 7 GLU C 224 GLU C 227 -1 N GLU C 224 O LYS C 238 SHEET 1 AA5 5 GLU C 193 THR C 197 0 SHEET 2 AA5 5 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA5 5 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA5 5 ALA C 293 ARG C 299 -1 N VAL C 294 O ILE C 308 SHEET 5 AA5 5 ASP C 281 VAL C 284 -1 N SER C 283 O LEU C 297 LINK OE2 GLU A 211 MN MN A 603 1555 1555 2.42 LINK OE1 GLU A 211 MG MG A 604 1555 1555 2.18 LINK OD1 ASP A 213 MN MN A 603 1555 1555 2.51 LINK OD2 ASP A 213 MG MG A 604 1555 1555 2.32 LINK OD2 ASP A 307 MN MN A 603 1555 1555 2.41 LINK NE2 HIS A 378 ZN ZN A 602 1555 1555 1.99 LINK SG CYS A 384 ZN ZN A 602 1555 1555 2.36 LINK SG CYS A 385 ZN ZN A 602 1555 1555 2.30 LINK SG CYS A 392 ZN ZN A 602 1555 1555 2.32 LINK O2A ATP A 601 MN MN A 603 1555 1555 2.53 LINK O3G ATP A 601 MG MG A 604 1555 1555 2.25 LINK O2B ATP A 601 MG MG A 604 1555 1555 2.40 LINK O2A ATP A 601 MG MG A 604 1555 1555 2.54 LINK OG SER C 199 MG MG C 604 1555 1555 2.99 LINK OE2 GLU C 211 MN MN C 603 1555 1555 2.59 LINK OE1 GLU C 211 MG MG C 604 1555 1555 2.20 LINK OD1 ASP C 213 MN MN C 603 1555 1555 2.53 LINK OD2 ASP C 213 MG MG C 604 1555 1555 2.33 LINK OD2 ASP C 307 MN MN C 603 1555 1555 2.41 LINK NE2 HIS C 378 ZN ZN C 602 1555 1555 2.13 LINK SG CYS C 384 ZN ZN C 602 1555 1555 2.35 LINK SG CYS C 385 ZN ZN C 602 1555 1555 2.28 LINK SG CYS C 392 ZN ZN C 602 1555 1555 2.36 LINK O2A ATP C 601 MN MN C 603 1555 1555 2.48 LINK O3G ATP C 601 MG MG C 604 1555 1555 2.47 LINK O2B ATP C 601 MG MG C 604 1555 1555 2.33 LINK O2A ATP C 601 MG MG C 604 1555 1555 2.86 CISPEP 1 ASN A 300 PRO A 301 0 9.12 CISPEP 2 ASN C 300 PRO C 301 0 -7.71 CRYST1 77.392 98.709 142.260 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007029 0.00000