HEADER IMMUNE SYSTEM/DNA 14-MAR-23 8GIP TITLE STRUCTURE OF TERNARY COMPLEX OF MOUSE CGAS WITH DSDNA AND BOUND ATP: TITLE 2 WITH 10MM MG2+ AND 0.040MM MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PALINDROMIC DNA18; COMPND 11 CHAIN: E, F, I, J; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NHMT MCAT WT; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: CUSTOM SYNTHESIZED BY IDT KEYWDS TRANSFERASE-DNA COMPLEX, CGAS, ATP AND DIVALENT METAL, IMMUNE SYSTEM, KEYWDS 2 IMMUNE SYSTEM-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,J.SOHN REVDAT 2 29-MAY-24 8GIP 1 JRNL REVDAT 1 22-MAY-24 8GIP 0 JRNL AUTH S.WU,S.B.GABELLI,J.SOHN JRNL TITL THE STRUCTURAL BASIS FOR 2'-5'/3'-5'-CGAMP SYNTHESIS BY JRNL TITL 2 CGAS. JRNL REF NAT COMMUN V. 15 4012 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38740774 JRNL DOI 10.1038/S41467-024-48365-3 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 30287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7900 - 7.3000 0.99 2727 135 0.1297 0.1640 REMARK 3 2 7.3000 - 5.8100 0.99 2736 144 0.1923 0.2433 REMARK 3 3 5.8100 - 5.0800 0.98 2688 163 0.1544 0.1989 REMARK 3 4 5.0800 - 4.6100 0.99 2698 166 0.1474 0.2255 REMARK 3 5 4.6100 - 4.2800 0.99 2710 166 0.1411 0.1913 REMARK 3 6 4.2800 - 4.0300 0.99 2725 166 0.1526 0.2310 REMARK 3 7 4.0300 - 3.8300 0.99 2724 137 0.1739 0.2504 REMARK 3 8 3.8300 - 3.6600 0.98 2688 151 0.1833 0.2772 REMARK 3 9 3.6600 - 3.5200 0.98 2674 147 0.1909 0.2312 REMARK 3 10 3.5200 - 3.4000 0.98 2680 155 0.1900 0.2749 REMARK 3 11 3.4000 - 3.3000 0.97 2705 130 0.2297 0.2478 REMARK 3 12 3.3000 - 3.2000 0.97 2695 129 0.2117 0.2648 REMARK 3 13 3.2000 - 3.1200 0.97 2659 127 0.2306 0.2560 REMARK 3 14 3.1200 - 3.0400 0.98 2747 140 0.2304 0.2890 REMARK 3 15 3.0400 - 2.9700 0.97 2699 95 0.2464 0.3142 REMARK 3 16 2.9700 - 2.9100 0.98 2681 137 0.2727 0.3489 REMARK 3 17 2.9100 - 2.8500 0.96 2688 121 0.2841 0.3475 REMARK 3 18 2.8500 - 2.8000 0.97 2662 142 0.2776 0.3916 REMARK 3 19 2.8000 - 2.7500 0.97 2672 125 0.2753 0.3463 REMARK 3 20 2.7500 - 2.7000 0.92 2559 108 0.2790 0.3581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : 1.105 NULL REMARK 3 CHIRALITY : 0.055 1151 REMARK 3 PLANARITY : 0.011 1084 REMARK 3 DIHEDRAL : 23.831 1470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 148:506) OR (CHAIN A AND RESSEQ REMARK 3 603:603) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8456 27.0443 -20.2529 REMARK 3 T TENSOR REMARK 3 T11: 0.2335 T22: 0.3066 REMARK 3 T33: 0.3259 T12: -0.0189 REMARK 3 T13: -0.0390 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.7500 L22: 2.7452 REMARK 3 L33: 1.3675 L12: 0.6060 REMARK 3 L13: -0.3488 L23: -0.1108 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.0321 S13: 0.1203 REMARK 3 S21: -0.1185 S22: -0.0054 S23: -0.2573 REMARK 3 S31: -0.0909 S32: 0.1580 S33: 0.0079 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 148:506) OR (CHAIN C AND RESSEQ REMARK 3 603:603) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7191 -7.9321 -19.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.3400 T22: 0.3940 REMARK 3 T33: 0.3535 T12: -0.0536 REMARK 3 T13: 0.0283 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.1341 L22: 3.5055 REMARK 3 L33: 1.3428 L12: 1.3953 REMARK 3 L13: 0.2853 L23: 0.5408 REMARK 3 S TENSOR REMARK 3 S11: -0.2309 S12: 0.2467 S13: -0.0904 REMARK 3 S21: -0.3237 S22: 0.1654 S23: 0.3307 REMARK 3 S31: 0.0394 S32: -0.1202 S33: 0.0821 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN E AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9181 23.3770 -31.6977 REMARK 3 T TENSOR REMARK 3 T11: 0.5269 T22: 0.6096 REMARK 3 T33: 0.4522 T12: 0.1896 REMARK 3 T13: 0.0353 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.0103 L22: 1.8934 REMARK 3 L33: 3.2963 L12: 1.0780 REMARK 3 L13: 1.4897 L23: -1.4298 REMARK 3 S TENSOR REMARK 3 S11: 0.1414 S12: 0.7779 S13: -0.1290 REMARK 3 S21: -0.6699 S22: 0.0732 S23: -0.0234 REMARK 3 S31: 0.0156 S32: -0.1075 S33: -0.1887 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN F AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5479 23.9587 -32.5009 REMARK 3 T TENSOR REMARK 3 T11: 0.5392 T22: 0.6648 REMARK 3 T33: 0.4419 T12: 0.1077 REMARK 3 T13: -0.0143 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.9797 L22: 2.8755 REMARK 3 L33: 3.2963 L12: 0.6587 REMARK 3 L13: 0.5161 L23: -0.0728 REMARK 3 S TENSOR REMARK 3 S11: 0.3367 S12: 0.7475 S13: 0.0164 REMARK 3 S21: -0.4032 S22: -0.1160 S23: -0.0843 REMARK 3 S31: 0.5254 S32: -0.5473 S33: -0.2528 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN I AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2574 -8.5588 -18.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.4710 T22: 0.4856 REMARK 3 T33: 0.6502 T12: 0.1460 REMARK 3 T13: 0.0306 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.4094 L22: 3.2454 REMARK 3 L33: 2.5949 L12: 1.6490 REMARK 3 L13: -1.8049 L23: 0.3913 REMARK 3 S TENSOR REMARK 3 S11: 0.1971 S12: -0.1833 S13: -0.6599 REMARK 3 S21: -0.1510 S22: -0.1291 S23: -0.0755 REMARK 3 S31: 0.4754 S32: 0.7437 S33: -0.1091 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN J AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6670 -6.5784 -18.9716 REMARK 3 T TENSOR REMARK 3 T11: 0.5476 T22: 0.6004 REMARK 3 T33: 0.5552 T12: 0.0394 REMARK 3 T13: 0.1199 T23: -0.1379 REMARK 3 L TENSOR REMARK 3 L11: 4.0434 L22: 3.9526 REMARK 3 L33: 1.7704 L12: -0.0355 REMARK 3 L13: 0.7194 L23: -0.1927 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.3036 S13: -0.4016 REMARK 3 S21: 0.0818 S22: 0.1108 S23: -0.4586 REMARK 3 S31: -0.4753 S32: 0.3485 S33: -0.1675 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GIP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.891 REMARK 200 MONOCHROMATOR : HORIZONTAL BOUNCE SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 32% MPD, WITH REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.96650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.23500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.19850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.23500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.96650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.19850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 PRO A 147 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 GLY A 245 REMARK 465 LEU A 507 REMARK 465 GLY C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 PRO C 147 REMARK 465 LYS C 240 REMARK 465 ARG C 241 REMARK 465 ILE C 242 REMARK 465 PRO C 243 REMARK 465 ARG C 244 REMARK 465 GLY C 245 REMARK 465 ASN C 246 REMARK 465 LEU C 252 REMARK 465 GLU C 253 REMARK 465 GLY C 254 REMARK 465 GLU C 255 REMARK 465 LEU C 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO C 221 CG PRO C 221 CD -0.230 REMARK 500 DA E 7 O3' DA E 7 C3' -0.040 REMARK 500 DT F 6 O3' DT F 6 C3' -0.042 REMARK 500 DG J 11 O3' DG J 11 C3' -0.073 REMARK 500 DT J 12 O3' DT J 12 C3' -0.037 REMARK 500 DC J 14 O3' DC J 14 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 301 C - N - CD ANGL. DEV. = -19.9 DEGREES REMARK 500 PRO C 221 N - CD - CG ANGL. DEV. = -9.5 DEGREES REMARK 500 DA E 15 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -155.31 48.39 REMARK 500 SER A 207 -60.46 62.41 REMARK 500 ARG A 222 83.92 48.33 REMARK 500 LYS A 240 23.46 -141.87 REMARK 500 GLU A 253 61.16 -162.06 REMARK 500 GLU A 255 1.60 51.64 REMARK 500 ASN A 300 47.17 -90.85 REMARK 500 PRO A 301 -79.75 40.93 REMARK 500 TRP A 331 -66.27 -122.41 REMARK 500 PHE A 358 -0.33 70.87 REMARK 500 GLN A 359 -58.14 -22.37 REMARK 500 ASP A 434 79.59 -116.32 REMARK 500 PHE C 189 44.54 -109.23 REMARK 500 SER C 207 -53.45 74.08 REMARK 500 ASN C 300 -177.47 -66.00 REMARK 500 PRO C 301 -12.30 -48.34 REMARK 500 TRP C 331 -74.67 -122.06 REMARK 500 ASN C 351 55.37 -107.64 REMARK 500 SER C 357 -95.45 -20.47 REMARK 500 LEU C 465 83.61 -152.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 300 PRO A 301 -117.34 REMARK 500 ARG C 299 ASN C 300 149.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 91.7 REMARK 620 3 ATP A 601 O3G 90.2 171.4 REMARK 620 4 ATP A 601 O2B 171.9 82.9 96.0 REMARK 620 5 ATP A 601 O2A 104.0 82.0 89.4 81.3 REMARK 620 6 HOH A 708 O 82.8 83.6 105.0 90.6 164.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE2 REMARK 620 2 ASP A 213 OD1 85.0 REMARK 620 3 ASP A 307 OD2 88.7 90.1 REMARK 620 4 ATP A 601 O2A 96.9 75.3 163.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 110.9 REMARK 620 3 CYS A 385 SG 105.8 124.2 REMARK 620 4 CYS A 392 SG 97.9 101.8 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE1 REMARK 620 2 ASP C 213 OD2 82.8 REMARK 620 3 ATP C 601 O3G 73.9 119.6 REMARK 620 4 ATP C 601 O2B 126.7 71.4 79.6 REMARK 620 5 ATP C 601 O2A 66.5 59.2 60.3 60.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE2 REMARK 620 2 ASP C 213 OD1 82.7 REMARK 620 3 ASP C 307 OD2 90.8 106.3 REMARK 620 4 ATP C 601 O2A 84.2 79.0 172.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 378 NE2 REMARK 620 2 CYS C 384 SG 111.2 REMARK 620 3 CYS C 385 SG 108.6 127.6 REMARK 620 4 CYS C 392 SG 96.1 100.8 107.4 REMARK 620 N 1 2 3 DBREF 8GIP A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIP C 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIP E 1 18 PDB 8GIP 8GIP 1 18 DBREF 8GIP F 1 18 PDB 8GIP 8GIP 1 18 DBREF 8GIP I 1 18 PDB 8GIP 8GIP 1 18 DBREF 8GIP J 1 18 PDB 8GIP 8GIP 1 18 SEQADV 8GIP GLY A 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIP THR A 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIP GLY A 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIP GLY C 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIP THR C 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIP GLY C 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 A 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 A 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 A 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 A 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 A 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 A 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 A 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 A 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 A 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 A 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 A 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 A 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 A 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 A 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 A 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 A 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 A 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 A 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 A 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 A 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 A 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 A 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 A 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 A 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 A 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 C 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 C 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 C 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 C 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 C 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 C 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 C 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 C 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 C 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 C 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 C 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 C 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 C 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 C 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 C 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 C 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 C 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 C 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 C 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 C 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 C 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 C 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 C 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 C 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 C 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 C 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 C 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 C 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 E 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 E 18 DC DA DG DA DT SEQRES 1 F 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 F 18 DC DA DG DA DT SEQRES 1 I 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 I 18 DC DA DG DA DT SEQRES 1 J 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 J 18 DC DA DG DA DT HET ATP A 601 31 HET MG A 602 1 HET ZN A 603 1 HET MN A 604 1 HET ATP C 601 31 HET MG C 602 1 HET ZN C 603 1 HET MN C 604 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 8 MG 2(MG 2+) FORMUL 9 ZN 2(ZN 2+) FORMUL 10 MN 2(MN 2+) FORMUL 15 HOH *40(H2 O) HELIX 1 AA1 ASP A 148 ARG A 158 1 11 HELIX 2 AA2 LYS A 160 LYS A 184 1 25 HELIX 3 AA3 GLY A 198 HIS A 203 1 6 HELIX 4 AA4 LEU A 248 LEU A 252 5 5 HELIX 5 AA5 SER A 258 GLU A 276 1 19 HELIX 6 AA6 PRO A 319 LYS A 323 5 5 HELIX 7 AA7 GLY A 333 GLU A 343 1 11 HELIX 8 AA8 PHE A 358 GLY A 360 5 3 HELIX 9 AA9 PHE A 367 ASN A 376 1 10 HELIX 10 AB1 CYS A 393 PHE A 412 1 20 HELIX 11 AB2 GLN A 413 PHE A 418 5 6 HELIX 12 AB3 CYS A 419 ASP A 434 1 16 HELIX 13 AB4 GLN A 436 ARG A 443 5 8 HELIX 14 AB5 ASN A 444 GLU A 463 1 20 HELIX 15 AB6 ASP A 482 ASN A 499 1 18 HELIX 16 AB7 GLY A 500 LYS A 506 5 7 HELIX 17 AB8 LYS C 149 ARG C 158 1 10 HELIX 18 AB9 LYS C 160 ARG C 185 1 26 HELIX 19 AC1 GLY C 198 GLU C 202 1 5 HELIX 20 AC2 PRO C 247 PHE C 251 5 5 HELIX 21 AC3 SER C 258 GLU C 276 1 19 HELIX 22 AC4 PRO C 319 LYS C 323 5 5 HELIX 23 AC5 GLY C 333 GLU C 343 1 11 HELIX 24 AC6 PHE C 358 GLY C 360 5 3 HELIX 25 AC7 PHE C 367 ASN C 377 1 11 HELIX 26 AC8 CYS C 393 PHE C 412 1 20 HELIX 27 AC9 GLN C 413 ASP C 416 5 4 HELIX 28 AD1 CYS C 419 ASP C 434 1 16 HELIX 29 AD2 GLN C 436 ARG C 443 5 8 HELIX 30 AD3 ASN C 444 GLU C 463 1 20 HELIX 31 AD4 ASP C 482 ASN C 499 1 18 HELIX 32 AD5 GLY C 500 ASP C 505 5 6 SHEET 1 AA1 7 GLU A 193 THR A 197 0 SHEET 2 AA1 7 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA1 7 GLU A 303 SER A 314 1 O ILE A 309 N VAL A 214 SHEET 4 AA1 7 PHE A 345 PRO A 349 -1 O LEU A 347 N LEU A 312 SHEET 5 AA1 7 THR A 362 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 LYS A 238 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 GLU A 224 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 AA2 5 GLU A 193 THR A 197 0 SHEET 2 AA2 5 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA2 5 GLU A 303 SER A 314 1 O ILE A 309 N VAL A 214 SHEET 4 AA2 5 ALA A 293 ARG A 299 -1 N LEU A 296 O VAL A 306 SHEET 5 AA2 5 ASP A 281 VAL A 284 -1 N ASP A 281 O ARG A 299 SHEET 1 AA3 7 VAL C 192 THR C 197 0 SHEET 2 AA3 7 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA3 7 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA3 7 PHE C 345 PRO C 349 -1 O PHE C 345 N SER C 314 SHEET 5 AA3 7 THR C 362 SER C 366 -1 O ARG C 364 N VAL C 348 SHEET 6 AA3 7 PHE C 234 LYS C 238 -1 N TYR C 235 O TRP C 363 SHEET 7 AA3 7 GLU C 224 GLU C 227 -1 N GLU C 224 O LYS C 238 SHEET 1 AA4 5 VAL C 192 THR C 197 0 SHEET 2 AA4 5 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA4 5 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA4 5 ALA C 293 ARG C 299 -1 N LEU C 296 O VAL C 306 SHEET 5 AA4 5 VAL C 282 VAL C 284 -1 N SER C 283 O LEU C 297 LINK OE1 GLU A 211 MG MG A 602 1555 1555 2.19 LINK OE2 GLU A 211 MN MN A 604 1555 1555 2.19 LINK OD2 ASP A 213 MG MG A 602 1555 1555 2.23 LINK OD1 ASP A 213 MN MN A 604 1555 1555 2.47 LINK OD2 ASP A 307 MN MN A 604 1555 1555 2.40 LINK NE2 HIS A 378 ZN ZN A 603 1555 1555 2.06 LINK SG CYS A 384 ZN ZN A 603 1555 1555 2.33 LINK SG CYS A 385 ZN ZN A 603 1555 1555 2.29 LINK SG CYS A 392 ZN ZN A 603 1555 1555 2.33 LINK O3G ATP A 601 MG MG A 602 1555 1555 2.08 LINK O2B ATP A 601 MG MG A 602 1555 1555 2.34 LINK O2A ATP A 601 MG MG A 602 1555 1555 2.07 LINK O2A ATP A 601 MN MN A 604 1555 1555 2.51 LINK MG MG A 602 O HOH A 708 1555 1555 1.95 LINK OE1 GLU C 211 MG MG C 602 1555 1555 2.05 LINK OE2 GLU C 211 MN MN C 604 1555 1555 2.17 LINK OD2 ASP C 213 MG MG C 602 1555 1555 2.43 LINK OD1 ASP C 213 MN MN C 604 1555 1555 2.29 LINK OD2 ASP C 307 MN MN C 604 1555 1555 2.42 LINK NE2 HIS C 378 ZN ZN C 603 1555 1555 2.10 LINK SG CYS C 384 ZN ZN C 603 1555 1555 2.32 LINK SG CYS C 385 ZN ZN C 603 1555 1555 2.29 LINK SG CYS C 392 ZN ZN C 603 1555 1555 2.35 LINK O3G ATP C 601 MG MG C 602 1555 1555 2.52 LINK O2B ATP C 601 MG MG C 602 1555 1555 2.42 LINK O2A ATP C 601 MG MG C 602 1555 1555 2.94 LINK O2A ATP C 601 MN MN C 604 1555 1555 2.78 CRYST1 77.933 98.397 142.470 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007019 0.00000