HEADER REPLICATION 15-MAR-23 8GJF TITLE AFUPCNA BOUND WITH PEPTIDE MIMETIC CAVEAT 8GJF RESIDUES ASN A 194 AND SER A 196 ARE LINKED TOGETHER IN THE CAVEAT 2 8GJF MODEL; HOWEVER, THERE ARE RESIDUES BETWEEN THEM IN THE CAVEAT 3 8GJF DEPOSITED POLYMERIC SEQUENCE. RESIDUES SER E 153 AND LYS E CAVEAT 4 8GJF 154 THAT ARE NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE CAVEAT 5 8GJF NOT PROPERLY LINKED: DISTANCE BETWEEN C AND N IS 0.79 A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 614-869; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYS-ARG-ARG-GLN-THR-SER-MET-THR-ASP-PHE-TYR-HIS-SER-LYS- COMPND 8 ARG; COMPND 9 CHAIN: D, E, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 GENE: CDV57_03149; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS PCNA, DNA REPLICATION, PEPTIDE MIMETIC, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR B.VANDBORG,J.B.BRUNING REVDAT 1 24-JAN-24 8GJF 0 JRNL AUTH B.C.VANDBORG,A.J.HORSFALL,J.L.PEDERICK,A.D.ABELL,J.B.BRUNING JRNL TITL TOWARDS A HIGH-AFFINITY PEPTIDOMIMETIC TARGETING JRNL TITL 2 PROLIFERATING CELL NUCLEAR ANTIGEN FROM ASPERGILLUS JRNL TITL 3 FUMIGATUS. JRNL REF J FUNGI V. 9 2023 JRNL REFN ESSN 2309-608X JRNL PMID 37998903 JRNL DOI 10.3390/JOF9111098 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 57608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2000 - 5.5100 1.00 2704 144 0.2008 0.2476 REMARK 3 2 5.5100 - 4.3800 0.96 2579 120 0.1698 0.2058 REMARK 3 3 4.3800 - 3.8300 1.00 2653 122 0.1892 0.2286 REMARK 3 4 3.8200 - 3.4800 1.00 2645 126 0.2056 0.2465 REMARK 3 5 3.4800 - 3.2300 1.00 2605 157 0.2283 0.2530 REMARK 3 6 3.2300 - 3.0400 1.00 2621 155 0.2525 0.2642 REMARK 3 7 3.0400 - 2.8800 1.00 2633 149 0.2692 0.3076 REMARK 3 8 2.8800 - 2.7600 1.00 2599 155 0.2731 0.3183 REMARK 3 9 2.7600 - 2.6500 0.97 2530 134 0.2687 0.3266 REMARK 3 10 2.6500 - 2.5600 0.96 2497 148 0.2801 0.3064 REMARK 3 11 2.5600 - 2.4800 0.99 2636 112 0.2769 0.2983 REMARK 3 12 2.4800 - 2.4100 0.99 2629 107 0.2836 0.3331 REMARK 3 13 2.4100 - 2.3500 0.99 2567 155 0.2810 0.2874 REMARK 3 14 2.3500 - 2.2900 1.00 2628 135 0.2993 0.3741 REMARK 3 15 2.2900 - 2.2400 0.99 2626 131 0.2969 0.3201 REMARK 3 16 2.2400 - 2.1900 0.99 2584 148 0.2964 0.3312 REMARK 3 17 2.1900 - 2.1500 1.00 2605 140 0.2901 0.2905 REMARK 3 18 2.1500 - 2.1100 0.99 2576 162 0.3050 0.3138 REMARK 3 19 2.1100 - 2.0700 1.00 2573 140 0.3203 0.3485 REMARK 3 20 2.0700 - 2.0300 0.99 2630 131 0.3296 0.3560 REMARK 3 21 2.0300 - 2.0000 0.99 2600 117 0.3566 0.4059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6048 REMARK 3 ANGLE : 1.196 8206 REMARK 3 CHIRALITY : 0.054 1008 REMARK 3 PLANARITY : 0.007 1052 REMARK 3 DIHEDRAL : 16.112 850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57623 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 42.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TACSIMATE PH 4.0, 0.1M NA REMARK 280 ACETATE, 16% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.00200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.00200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 205 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 195 REMARK 465 GLY B 255 REMARK 465 ASP B 256 REMARK 465 ASP C 256 REMARK 465 LYS D 141 REMARK 465 ARG D 155 REMARK 465 LYS E 141 REMARK 465 ARG E 142 REMARK 465 ARG E 155 REMARK 465 LYS F 141 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 LYS A 53 CE NZ REMARK 470 GLU A 55 OE1 OE2 REMARK 470 SER A 58 OG REMARK 470 ARG A 64 CZ NH1 NH2 REMARK 470 ARG A 80 CD NE CZ NH1 NH2 REMARK 470 ASP A 93 CG OD1 OD2 REMARK 470 SER A 105 OG REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 HIS A 185 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 186 OG1 CG2 REMARK 470 SER A 187 OG REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 PRO A 191 CG CD REMARK 470 ASN A 194 CG OD1 ND2 REMARK 470 ILE A 197 CG1 CG2 CD1 REMARK 470 LYS A 224 CE NZ REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 ASP B 93 CG OD1 OD2 REMARK 470 ASP B 94 CG OD1 OD2 REMARK 470 PRO B 96 CG CD REMARK 470 ASP B 97 CG OD1 OD2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 SER B 187 OG REMARK 470 VAL B 188 CG1 CG2 REMARK 470 ASP B 189 CG OD1 OD2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 GLU C 7 CG CD OE1 OE2 REMARK 470 GLN C 8 CG CD OE1 NE2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 ARG C 64 CZ NH1 NH2 REMARK 470 GLU C 107 CG CD OE1 OE2 REMARK 470 ASP C 122 CG OD1 OD2 REMARK 470 GLN C 123 CG CD OE1 NE2 REMARK 470 ARG C 146 NE CZ NH1 NH2 REMARK 470 ARG C 149 NE CZ NH1 NH2 REMARK 470 LYS C 164 CG CD CE NZ REMARK 470 VAL C 188 CG1 CG2 REMARK 470 ASP C 189 CG OD1 OD2 REMARK 470 GLN C 193 CG CD OE1 NE2 REMARK 470 LYS C 210 NZ REMARK 470 LYS C 224 CD CE NZ REMARK 470 GLU C 232 CG CD OE1 OE2 REMARK 470 LYS D 154 CG CD CE NZ REMARK 470 LYS E 154 CG CD CE NZ REMARK 470 ARG F 142 NE CZ NH1 NH2 REMARK 470 ARG F 155 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER E 153 N LYS E 154 1.75 REMARK 500 O HOH A 324 O HOH A 325 2.08 REMARK 500 OH TYR C 60 O HOH C 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 61 OG SER C 33 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 161 CD GLU B 161 OE2 0.091 REMARK 500 SER E 153 C LYS E 154 N -0.545 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 201 OE1 - CD - OE2 ANGL. DEV. = -45.8 DEGREES REMARK 500 GLU A 201 CG - CD - OE1 ANGL. DEV. = 42.2 DEGREES REMARK 500 GLU A 201 CG - CD - OE2 ANGL. DEV. = -35.2 DEGREES REMARK 500 GLU B 161 CG - CD - OE2 ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO B 191 C - N - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 104.81 -164.68 REMARK 500 ASP A 93 -151.29 -99.06 REMARK 500 SER A 95 75.93 -110.65 REMARK 500 THR A 108 -38.67 -133.10 REMARK 500 ASP A 189 -74.89 21.07 REMARK 500 LYS A 190 -101.16 137.84 REMARK 500 ALA B 59 103.33 116.51 REMARK 500 ASP B 93 -151.38 -98.12 REMARK 500 SER B 95 77.28 -109.51 REMARK 500 THR B 108 -40.56 -134.36 REMARK 500 ASP B 189 -71.74 -61.36 REMARK 500 GLU B 192 1.19 -67.29 REMARK 500 GLN B 193 32.87 -146.26 REMARK 500 ALA C 59 104.37 -168.07 REMARK 500 ASP C 93 -147.24 -97.11 REMARK 500 SER C 95 77.17 -114.76 REMARK 500 THR C 108 -36.41 -131.82 REMARK 500 ASP C 189 -75.38 -67.85 REMARK 500 ILE C 254 -51.36 -121.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 161 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 427 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 428 DISTANCE = 9.44 ANGSTROMS REMARK 525 HOH A 429 DISTANCE = 11.09 ANGSTROMS REMARK 525 HOH B 422 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 423 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH C 431 DISTANCE = 5.90 ANGSTROMS DBREF1 8GJF A 1 256 UNP A0A229Y5V5_ASPFM DBREF2 8GJF A A0A229Y5V5 614 869 DBREF1 8GJF B 1 256 UNP A0A229Y5V5_ASPFM DBREF2 8GJF B A0A229Y5V5 614 869 DBREF1 8GJF C 1 256 UNP A0A229Y5V5_ASPFM DBREF2 8GJF C A0A229Y5V5 614 869 DBREF 8GJF D 141 155 PDB 8GJF 8GJF 141 155 DBREF 8GJF E 141 155 PDB 8GJF 8GJF 141 155 DBREF 8GJF F 141 155 PDB 8GJF 8GJF 141 155 SEQADV 8GJF ALA A 59 UNP A0A229Y5V PRO 672 CONFLICT SEQADV 8GJF ALA B 59 UNP A0A229Y5V PRO 672 CONFLICT SEQADV 8GJF ALA C 59 UNP A0A229Y5V PRO 672 CONFLICT SEQRES 1 A 256 MET LEU GLU ALA ARG LEU GLU GLN ALA SER LEU LEU LYS SEQRES 2 A 256 ARG VAL VAL ASP ALA ILE LYS ASP LEU VAL GLN ASP CYS SEQRES 3 A 256 ASN PHE ASP CYS ASN ASP SER GLY ILE ALA LEU GLN ALA SEQRES 4 A 256 MET ASP ASN SER HIS VAL ALA LEU VAL SER MET LEU LEU SEQRES 5 A 256 LYS ALA GLU GLY PHE SER ALA TYR ARG CYS ASP ARG ASN SEQRES 6 A 256 ILE ALA LEU GLY ILE ASN LEU VAL SER LEU THR LYS VAL SEQRES 7 A 256 LEU ARG ALA ALA GLN ASN GLU ASP ILE LEU THR LEU LYS SEQRES 8 A 256 ALA ASP ASP SER PRO ASP ALA VAL ASN LEU MET PHE GLU SEQRES 9 A 256 SER ALA GLU THR ASP ARG ILE SER GLU TYR ASP ILE LYS SEQRES 10 A 256 LEU MET ASP ILE ASP GLN GLU HIS LEU ALA ILE PRO GLU SEQRES 11 A 256 THR GLU TYR ALA ALA THR VAL GLU MET PRO SER ALA GLU SEQRES 12 A 256 PHE GLN ARG ILE CYS ARG ASP LEU ASN ALA LEU SER GLU SEQRES 13 A 256 SER VAL VAL ILE GLU ALA THR LYS GLU GLY VAL LYS PHE SEQRES 14 A 256 SER CYS GLN GLY ASP ILE GLY SER GLY SER VAL THR ILE SEQRES 15 A 256 ARG GLN HIS THR SER VAL ASP LYS PRO GLU GLN ASN VAL SEQRES 16 A 256 SER ILE ALA LEU SER GLU PRO VAL ALA LEU THR PHE SER SEQRES 17 A 256 LEU LYS TYR LEU VAL ASN PHE CYS LYS ALA THR SER LEU SEQRES 18 A 256 SER SER LYS VAL THR LEU CYS LEU SER GLN GLU VAL PRO SEQRES 19 A 256 LEU LEU VAL GLU TYR GLY LEU GLY SER GLY HIS LEU ARG SEQRES 20 A 256 PHE TYR LEU ALA PRO LYS ILE GLY ASP SEQRES 1 B 256 MET LEU GLU ALA ARG LEU GLU GLN ALA SER LEU LEU LYS SEQRES 2 B 256 ARG VAL VAL ASP ALA ILE LYS ASP LEU VAL GLN ASP CYS SEQRES 3 B 256 ASN PHE ASP CYS ASN ASP SER GLY ILE ALA LEU GLN ALA SEQRES 4 B 256 MET ASP ASN SER HIS VAL ALA LEU VAL SER MET LEU LEU SEQRES 5 B 256 LYS ALA GLU GLY PHE SER ALA TYR ARG CYS ASP ARG ASN SEQRES 6 B 256 ILE ALA LEU GLY ILE ASN LEU VAL SER LEU THR LYS VAL SEQRES 7 B 256 LEU ARG ALA ALA GLN ASN GLU ASP ILE LEU THR LEU LYS SEQRES 8 B 256 ALA ASP ASP SER PRO ASP ALA VAL ASN LEU MET PHE GLU SEQRES 9 B 256 SER ALA GLU THR ASP ARG ILE SER GLU TYR ASP ILE LYS SEQRES 10 B 256 LEU MET ASP ILE ASP GLN GLU HIS LEU ALA ILE PRO GLU SEQRES 11 B 256 THR GLU TYR ALA ALA THR VAL GLU MET PRO SER ALA GLU SEQRES 12 B 256 PHE GLN ARG ILE CYS ARG ASP LEU ASN ALA LEU SER GLU SEQRES 13 B 256 SER VAL VAL ILE GLU ALA THR LYS GLU GLY VAL LYS PHE SEQRES 14 B 256 SER CYS GLN GLY ASP ILE GLY SER GLY SER VAL THR ILE SEQRES 15 B 256 ARG GLN HIS THR SER VAL ASP LYS PRO GLU GLN ASN VAL SEQRES 16 B 256 SER ILE ALA LEU SER GLU PRO VAL ALA LEU THR PHE SER SEQRES 17 B 256 LEU LYS TYR LEU VAL ASN PHE CYS LYS ALA THR SER LEU SEQRES 18 B 256 SER SER LYS VAL THR LEU CYS LEU SER GLN GLU VAL PRO SEQRES 19 B 256 LEU LEU VAL GLU TYR GLY LEU GLY SER GLY HIS LEU ARG SEQRES 20 B 256 PHE TYR LEU ALA PRO LYS ILE GLY ASP SEQRES 1 C 256 MET LEU GLU ALA ARG LEU GLU GLN ALA SER LEU LEU LYS SEQRES 2 C 256 ARG VAL VAL ASP ALA ILE LYS ASP LEU VAL GLN ASP CYS SEQRES 3 C 256 ASN PHE ASP CYS ASN ASP SER GLY ILE ALA LEU GLN ALA SEQRES 4 C 256 MET ASP ASN SER HIS VAL ALA LEU VAL SER MET LEU LEU SEQRES 5 C 256 LYS ALA GLU GLY PHE SER ALA TYR ARG CYS ASP ARG ASN SEQRES 6 C 256 ILE ALA LEU GLY ILE ASN LEU VAL SER LEU THR LYS VAL SEQRES 7 C 256 LEU ARG ALA ALA GLN ASN GLU ASP ILE LEU THR LEU LYS SEQRES 8 C 256 ALA ASP ASP SER PRO ASP ALA VAL ASN LEU MET PHE GLU SEQRES 9 C 256 SER ALA GLU THR ASP ARG ILE SER GLU TYR ASP ILE LYS SEQRES 10 C 256 LEU MET ASP ILE ASP GLN GLU HIS LEU ALA ILE PRO GLU SEQRES 11 C 256 THR GLU TYR ALA ALA THR VAL GLU MET PRO SER ALA GLU SEQRES 12 C 256 PHE GLN ARG ILE CYS ARG ASP LEU ASN ALA LEU SER GLU SEQRES 13 C 256 SER VAL VAL ILE GLU ALA THR LYS GLU GLY VAL LYS PHE SEQRES 14 C 256 SER CYS GLN GLY ASP ILE GLY SER GLY SER VAL THR ILE SEQRES 15 C 256 ARG GLN HIS THR SER VAL ASP LYS PRO GLU GLN ASN VAL SEQRES 16 C 256 SER ILE ALA LEU SER GLU PRO VAL ALA LEU THR PHE SER SEQRES 17 C 256 LEU LYS TYR LEU VAL ASN PHE CYS LYS ALA THR SER LEU SEQRES 18 C 256 SER SER LYS VAL THR LEU CYS LEU SER GLN GLU VAL PRO SEQRES 19 C 256 LEU LEU VAL GLU TYR GLY LEU GLY SER GLY HIS LEU ARG SEQRES 20 C 256 PHE TYR LEU ALA PRO LYS ILE GLY ASP SEQRES 1 D 15 LYS ARG ARG GLN THR SER MET THR ASP PHE TYR HIS SER SEQRES 2 D 15 LYS ARG SEQRES 1 E 15 LYS ARG ARG GLN THR SER MET THR ASP PHE TYR HIS SER SEQRES 2 E 15 LYS ARG SEQRES 1 F 15 LYS ARG ARG GLN THR SER MET THR ASP PHE TYR HIS SER SEQRES 2 F 15 LYS ARG FORMUL 7 HOH *421(H2 O) HELIX 1 AA1 ALA A 9 ALA A 18 1 10 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 ARG A 80 1 9 HELIX 4 AA4 SER A 141 ALA A 153 1 13 HELIX 5 AA5 LEU A 209 CYS A 216 1 8 HELIX 6 AA6 LYS A 217 SER A 222 5 6 HELIX 7 AA7 ALA B 9 ASP B 21 1 13 HELIX 8 AA8 GLU B 55 PHE B 57 5 3 HELIX 9 AA9 LEU B 72 ARG B 80 1 9 HELIX 10 AB1 SER B 141 ALA B 153 1 13 HELIX 11 AB2 LYS B 190 ASN B 194 5 5 HELIX 12 AB3 LEU B 209 CYS B 216 1 8 HELIX 13 AB4 LYS B 217 SER B 222 5 6 HELIX 14 AB5 ALA C 9 LYS C 20 1 12 HELIX 15 AB6 GLU C 55 PHE C 57 5 3 HELIX 16 AB7 LEU C 72 ARG C 80 1 9 HELIX 17 AB8 SER C 141 ALA C 153 1 13 HELIX 18 AB9 LYS C 190 ASN C 194 5 5 HELIX 19 AC1 LEU C 209 CYS C 216 1 8 HELIX 20 AC2 LYS C 217 SER C 222 5 6 HELIX 21 AC3 SER D 146 PHE D 150 5 5 HELIX 22 AC4 SER E 146 PHE E 150 5 5 HELIX 23 AC5 SER F 146 PHE F 150 5 5 SHEET 1 AA1 9 ALA A 59 CYS A 62 0 SHEET 2 AA1 9 LEU A 2 LEU A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 AA1 9 ILE A 87 ALA A 92 -1 O LEU A 90 N ALA A 4 SHEET 4 AA1 9 ALA A 98 GLU A 104 -1 O GLU A 104 N ILE A 87 SHEET 5 AA1 9 ILE A 111 LYS A 117 -1 O TYR A 114 N LEU A 101 SHEET 6 AA1 9 GLY B 176 ARG B 183 -1 O SER B 177 N ASP A 115 SHEET 7 AA1 9 GLY B 166 GLN B 172 -1 N VAL B 167 O ILE B 182 SHEET 8 AA1 9 SER B 157 ALA B 162 -1 N VAL B 159 O SER B 170 SHEET 9 AA1 9 VAL B 203 SER B 208 -1 O LEU B 205 N ILE B 160 SHEET 1 AA2 9 ILE A 66 ASN A 71 0 SHEET 2 AA2 9 ASP A 25 ASN A 31 -1 N CYS A 30 O ILE A 66 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ALA A 36 N ASP A 29 SHEET 4 AA2 9 ALA A 46 LYS A 53 -1 O VAL A 48 N ALA A 39 SHEET 5 AA2 9 GLY A 244 LEU A 250 -1 O ARG A 247 N SER A 49 SHEET 6 AA2 9 VAL A 233 GLY A 240 -1 N VAL A 237 O PHE A 248 SHEET 7 AA2 9 LYS A 224 SER A 230 -1 N THR A 226 O GLU A 238 SHEET 8 AA2 9 ALA A 135 PRO A 140 -1 N VAL A 137 O LEU A 227 SHEET 9 AA2 9 SER A 196 LEU A 199 -1 O ALA A 198 N THR A 136 SHEET 1 AA3 9 VAL A 203 SER A 208 0 SHEET 2 AA3 9 SER A 157 ALA A 162 -1 N ILE A 160 O LEU A 205 SHEET 3 AA3 9 GLY A 166 GLN A 172 -1 O SER A 170 N VAL A 159 SHEET 4 AA3 9 GLY A 176 ARG A 183 -1 O ILE A 182 N VAL A 167 SHEET 5 AA3 9 ILE C 111 LYS C 117 -1 O ASP C 115 N SER A 177 SHEET 6 AA3 9 ALA C 98 GLU C 104 -1 N LEU C 101 O TYR C 114 SHEET 7 AA3 9 ILE C 87 ALA C 92 -1 N LYS C 91 O ASN C 100 SHEET 8 AA3 9 LEU C 2 LEU C 6 -1 N ALA C 4 O LEU C 90 SHEET 9 AA3 9 TYR C 60 ARG C 61 -1 O ARG C 61 N GLU C 3 SHEET 1 AA4 2 LYS A 253 ILE A 254 0 SHEET 2 AA4 2 ARG D 143 GLN D 144 -1 O ARG D 143 N ILE A 254 SHEET 1 AA5 9 TYR B 60 CYS B 62 0 SHEET 2 AA5 9 LEU B 2 LEU B 6 -1 N GLU B 3 O ARG B 61 SHEET 3 AA5 9 ILE B 87 ALA B 92 -1 O LEU B 90 N ALA B 4 SHEET 4 AA5 9 ALA B 98 GLU B 104 -1 O GLU B 104 N ILE B 87 SHEET 5 AA5 9 ILE B 111 LYS B 117 -1 O TYR B 114 N LEU B 101 SHEET 6 AA5 9 GLY C 176 ARG C 183 -1 O SER C 177 N ASP B 115 SHEET 7 AA5 9 GLY C 166 GLY C 173 -1 N PHE C 169 O VAL C 180 SHEET 8 AA5 9 SER C 157 ALA C 162 -1 N VAL C 159 O SER C 170 SHEET 9 AA5 9 VAL C 203 SER C 208 -1 O LEU C 205 N ILE C 160 SHEET 1 AA6 9 ILE B 66 ASN B 71 0 SHEET 2 AA6 9 ASP B 25 ASN B 31 -1 N CYS B 30 O ILE B 66 SHEET 3 AA6 9 GLY B 34 MET B 40 -1 O ALA B 36 N ASP B 29 SHEET 4 AA6 9 ALA B 46 LYS B 53 -1 O VAL B 48 N ALA B 39 SHEET 5 AA6 9 GLY B 244 LEU B 250 -1 O ARG B 247 N SER B 49 SHEET 6 AA6 9 LEU B 235 GLY B 240 -1 N VAL B 237 O PHE B 248 SHEET 7 AA6 9 LYS B 224 LEU B 229 -1 N THR B 226 O GLU B 238 SHEET 8 AA6 9 ALA B 135 PRO B 140 -1 N MET B 139 O VAL B 225 SHEET 9 AA6 9 SER B 196 LEU B 199 -1 O ALA B 198 N THR B 136 SHEET 1 AA7 9 ILE C 66 ASN C 71 0 SHEET 2 AA7 9 ASP C 25 ASN C 31 -1 N CYS C 26 O ILE C 70 SHEET 3 AA7 9 GLY C 34 MET C 40 -1 O ALA C 36 N ASP C 29 SHEET 4 AA7 9 ALA C 46 LYS C 53 -1 O VAL C 48 N ALA C 39 SHEET 5 AA7 9 GLY C 244 LEU C 250 -1 O ARG C 247 N SER C 49 SHEET 6 AA7 9 LEU C 235 GLY C 240 -1 N VAL C 237 O PHE C 248 SHEET 7 AA7 9 LYS C 224 LEU C 229 -1 N THR C 226 O GLU C 238 SHEET 8 AA7 9 ALA C 135 PRO C 140 -1 N VAL C 137 O LEU C 227 SHEET 9 AA7 9 SER C 196 LEU C 199 -1 O ALA C 198 N THR C 136 SHEET 1 AA8 2 HIS C 125 LEU C 126 0 SHEET 2 AA8 2 SER F 153 LYS F 154 -1 O LYS F 154 N HIS C 125 CRYST1 146.004 84.830 70.452 90.00 91.41 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006849 0.000000 0.000168 0.00000 SCALE2 0.000000 0.011788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014198 0.00000