data_8GJN # _entry.id 8GJN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GJN pdb_00008gjn 10.2210/pdb8gjn/pdb WWPDB D_1000273050 ? ? EMDB EMD-40095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-04-05 2 'Structure model' 1 1 2023-04-12 3 'Structure model' 1 2 2023-04-19 4 'Structure model' 1 3 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' em_3d_fitting_list 8 4 'Structure model' em_admin 9 4 'Structure model' pdbx_entry_details 10 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 3 'Structure model' '_citation_author.identifier_ORCID' 7 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 8 4 'Structure model' '_em_admin.last_update' 9 4 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GJN _pdbx_database_status.recvd_initial_deposition_date 2023-03-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details '17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer' _pdbx_database_related.db_id EMD-40095 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email bchen@crystal.harvard.edu _pdbx_contact_author.name_first Bing _pdbx_contact_author.name_last Chen _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8625-1657 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kwon, H.J.' 1 ? 'Zhang, J.' 2 0000-0002-1289-0624 'Kosikova, M.' 3 ? 'Tang, W.C.' 4 ? 'Rodriguez, U.O.' 5 ? 'Peng, H.Q.' 6 ? 'Meseda, C.A.' 7 ? 'Pedro, C.L.' 8 ? 'Schmeisser, F.' 9 ? 'Lu, J.M.' 10 ? 'Zhou, B.' 11 ? 'Davis, C.T.' 12 ? 'Wentworth, D.E.' 13 ? 'Chen, W.H.' 14 ? 'Shriver, M.C.' 15 ? 'Pasetti, M.F.' 16 ? 'Weir, J.P.' 17 ? 'Chen, B.' 18 ? 'Xie, H.' 19 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J Med Virol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1096-9071 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 95 _citation.language ? _citation.page_first e28673 _citation.page_last e28673 _citation.title ;Distinct in vitro and in vivo neutralization profiles of monoclonal antibodies elicited by the receptor binding domain of the ancestral SARS-CoV-2. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/jmv.28673 _citation.pdbx_database_id_PubMed 36916782 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kwon, H.J.' 1 ? primary 'Zhang, J.' 2 ? primary 'Kosikova, M.' 3 ? primary 'Tang, W.' 4 ? primary 'Ortega-Rodriguez, U.' 5 0000-0002-1700-357X primary 'Peng, H.' 6 ? primary 'Meseda, C.A.' 7 ? primary 'Pedro, C.L.' 8 ? primary 'Schmeisser, F.' 9 ? primary 'Lu, J.' 10 ? primary 'Kang, I.' 11 ? primary 'Zhou, B.' 12 ? primary 'Davis, C.T.' 13 ? primary 'Wentworth, D.E.' 14 ? primary 'Chen, W.H.' 15 ? primary 'Shriver, M.C.' 16 ? primary 'Barnes, R.S.' 17 ? primary 'Pasetti, M.F.' 18 ? primary 'Weir, J.P.' 19 ? primary 'Chen, B.' 20 ? primary 'Xie, H.' 21 0000-0001-8318-5554 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Heavy chain of 17B10 Fab' 15353.094 1 ? ? ? ? 2 polymer man 'Light chain of 17B10 Fab' 14090.899 1 ? ? ? ? 3 polymer man ;Spike protein S2' ; 22218.936 1 ? ? RBD ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGWSWIFLFLLSGTAGVLSEVQLQQSGPELVKPGASVRISCKTSGYTFTEYSMFWVKQSHGQSLEWIGGINPNDDSTTYK QNFKGKATLTVDKSSSTAFMELRSLTSEDSAVYYCTRDRYDGRVVDFWGQGTTLTVSS ; ;MGWSWIFLFLLSGTAGVLSEVQLQQSGPELVKPGASVRISCKTSGYTFTEYSMFWVKQSHGQSLEWIGGINPNDDSTTYK QNFKGKATLTVDKSSSTAFMELRSLTSEDSAVYYCTRDRYDGRVVDFWGQGTTLTVSS ; A ? 2 'polypeptide(L)' no no ;MRVPAHVFGFLLLWFPGTRCDIQMTQSPSSLSASLGERVSLICRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPK RFSGSRSGSEYSLTISSPESEDFADYYCLQYASYPWTFGGGTKLEIK ; ;MRVPAHVFGFLLLWFPGTRCDIQMTQSPSSLSASLGERVSLICRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPK RFSGSRSGSEYSLTISSPESEDFADYYCLQYASYPWTFGGGTKLEIK ; B ? 3 'polypeptide(L)' no no ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 TRP n 1 4 SER n 1 5 TRP n 1 6 ILE n 1 7 PHE n 1 8 LEU n 1 9 PHE n 1 10 LEU n 1 11 LEU n 1 12 SER n 1 13 GLY n 1 14 THR n 1 15 ALA n 1 16 GLY n 1 17 VAL n 1 18 LEU n 1 19 SER n 1 20 GLU n 1 21 VAL n 1 22 GLN n 1 23 LEU n 1 24 GLN n 1 25 GLN n 1 26 SER n 1 27 GLY n 1 28 PRO n 1 29 GLU n 1 30 LEU n 1 31 VAL n 1 32 LYS n 1 33 PRO n 1 34 GLY n 1 35 ALA n 1 36 SER n 1 37 VAL n 1 38 ARG n 1 39 ILE n 1 40 SER n 1 41 CYS n 1 42 LYS n 1 43 THR n 1 44 SER n 1 45 GLY n 1 46 TYR n 1 47 THR n 1 48 PHE n 1 49 THR n 1 50 GLU n 1 51 TYR n 1 52 SER n 1 53 MET n 1 54 PHE n 1 55 TRP n 1 56 VAL n 1 57 LYS n 1 58 GLN n 1 59 SER n 1 60 HIS n 1 61 GLY n 1 62 GLN n 1 63 SER n 1 64 LEU n 1 65 GLU n 1 66 TRP n 1 67 ILE n 1 68 GLY n 1 69 GLY n 1 70 ILE n 1 71 ASN n 1 72 PRO n 1 73 ASN n 1 74 ASP n 1 75 ASP n 1 76 SER n 1 77 THR n 1 78 THR n 1 79 TYR n 1 80 LYS n 1 81 GLN n 1 82 ASN n 1 83 PHE n 1 84 LYS n 1 85 GLY n 1 86 LYS n 1 87 ALA n 1 88 THR n 1 89 LEU n 1 90 THR n 1 91 VAL n 1 92 ASP n 1 93 LYS n 1 94 SER n 1 95 SER n 1 96 SER n 1 97 THR n 1 98 ALA n 1 99 PHE n 1 100 MET n 1 101 GLU n 1 102 LEU n 1 103 ARG n 1 104 SER n 1 105 LEU n 1 106 THR n 1 107 SER n 1 108 GLU n 1 109 ASP n 1 110 SER n 1 111 ALA n 1 112 VAL n 1 113 TYR n 1 114 TYR n 1 115 CYS n 1 116 THR n 1 117 ARG n 1 118 ASP n 1 119 ARG n 1 120 TYR n 1 121 ASP n 1 122 GLY n 1 123 ARG n 1 124 VAL n 1 125 VAL n 1 126 ASP n 1 127 PHE n 1 128 TRP n 1 129 GLY n 1 130 GLN n 1 131 GLY n 1 132 THR n 1 133 THR n 1 134 LEU n 1 135 THR n 1 136 VAL n 1 137 SER n 1 138 SER n 2 1 MET n 2 2 ARG n 2 3 VAL n 2 4 PRO n 2 5 ALA n 2 6 HIS n 2 7 VAL n 2 8 PHE n 2 9 GLY n 2 10 PHE n 2 11 LEU n 2 12 LEU n 2 13 LEU n 2 14 TRP n 2 15 PHE n 2 16 PRO n 2 17 GLY n 2 18 THR n 2 19 ARG n 2 20 CYS n 2 21 ASP n 2 22 ILE n 2 23 GLN n 2 24 MET n 2 25 THR n 2 26 GLN n 2 27 SER n 2 28 PRO n 2 29 SER n 2 30 SER n 2 31 LEU n 2 32 SER n 2 33 ALA n 2 34 SER n 2 35 LEU n 2 36 GLY n 2 37 GLU n 2 38 ARG n 2 39 VAL n 2 40 SER n 2 41 LEU n 2 42 ILE n 2 43 CYS n 2 44 ARG n 2 45 ALA n 2 46 SER n 2 47 GLN n 2 48 GLU n 2 49 ILE n 2 50 SER n 2 51 GLY n 2 52 TYR n 2 53 LEU n 2 54 SER n 2 55 TRP n 2 56 LEU n 2 57 GLN n 2 58 GLN n 2 59 LYS n 2 60 PRO n 2 61 ASP n 2 62 GLY n 2 63 THR n 2 64 ILE n 2 65 LYS n 2 66 ARG n 2 67 LEU n 2 68 ILE n 2 69 TYR n 2 70 ALA n 2 71 ALA n 2 72 SER n 2 73 THR n 2 74 LEU n 2 75 ASP n 2 76 SER n 2 77 GLY n 2 78 VAL n 2 79 PRO n 2 80 LYS n 2 81 ARG n 2 82 PHE n 2 83 SER n 2 84 GLY n 2 85 SER n 2 86 ARG n 2 87 SER n 2 88 GLY n 2 89 SER n 2 90 GLU n 2 91 TYR n 2 92 SER n 2 93 LEU n 2 94 THR n 2 95 ILE n 2 96 SER n 2 97 SER n 2 98 PRO n 2 99 GLU n 2 100 SER n 2 101 GLU n 2 102 ASP n 2 103 PHE n 2 104 ALA n 2 105 ASP n 2 106 TYR n 2 107 TYR n 2 108 CYS n 2 109 LEU n 2 110 GLN n 2 111 TYR n 2 112 ALA n 2 113 SER n 2 114 TYR n 2 115 PRO n 2 116 TRP n 2 117 THR n 2 118 PHE n 2 119 GLY n 2 120 GLY n 2 121 GLY n 2 122 THR n 2 123 LYS n 2 124 LEU n 2 125 GLU n 2 126 ILE n 2 127 LYS n 3 1 THR n 3 2 ASN n 3 3 LEU n 3 4 CYS n 3 5 PRO n 3 6 PHE n 3 7 GLY n 3 8 GLU n 3 9 VAL n 3 10 PHE n 3 11 ASN n 3 12 ALA n 3 13 THR n 3 14 ARG n 3 15 PHE n 3 16 ALA n 3 17 SER n 3 18 VAL n 3 19 TYR n 3 20 ALA n 3 21 TRP n 3 22 ASN n 3 23 ARG n 3 24 LYS n 3 25 ARG n 3 26 ILE n 3 27 SER n 3 28 ASN n 3 29 CYS n 3 30 VAL n 3 31 ALA n 3 32 ASP n 3 33 TYR n 3 34 SER n 3 35 VAL n 3 36 LEU n 3 37 TYR n 3 38 ASN n 3 39 SER n 3 40 ALA n 3 41 SER n 3 42 PHE n 3 43 SER n 3 44 THR n 3 45 PHE n 3 46 LYS n 3 47 CYS n 3 48 TYR n 3 49 GLY n 3 50 VAL n 3 51 SER n 3 52 PRO n 3 53 THR n 3 54 LYS n 3 55 LEU n 3 56 ASN n 3 57 ASP n 3 58 LEU n 3 59 CYS n 3 60 PHE n 3 61 THR n 3 62 ASN n 3 63 VAL n 3 64 TYR n 3 65 ALA n 3 66 ASP n 3 67 SER n 3 68 PHE n 3 69 VAL n 3 70 ILE n 3 71 ARG n 3 72 GLY n 3 73 ASP n 3 74 GLU n 3 75 VAL n 3 76 ARG n 3 77 GLN n 3 78 ILE n 3 79 ALA n 3 80 PRO n 3 81 GLY n 3 82 GLN n 3 83 THR n 3 84 GLY n 3 85 LYS n 3 86 ILE n 3 87 ALA n 3 88 ASP n 3 89 TYR n 3 90 ASN n 3 91 TYR n 3 92 LYS n 3 93 LEU n 3 94 PRO n 3 95 ASP n 3 96 ASP n 3 97 PHE n 3 98 THR n 3 99 GLY n 3 100 CYS n 3 101 VAL n 3 102 ILE n 3 103 ALA n 3 104 TRP n 3 105 ASN n 3 106 SER n 3 107 ASN n 3 108 ASN n 3 109 LEU n 3 110 ASP n 3 111 SER n 3 112 LYS n 3 113 VAL n 3 114 GLY n 3 115 GLY n 3 116 ASN n 3 117 TYR n 3 118 ASN n 3 119 TYR n 3 120 LEU n 3 121 TYR n 3 122 ARG n 3 123 LEU n 3 124 PHE n 3 125 ARG n 3 126 LYS n 3 127 SER n 3 128 ASN n 3 129 LEU n 3 130 LYS n 3 131 PRO n 3 132 PHE n 3 133 GLU n 3 134 ARG n 3 135 ASP n 3 136 ILE n 3 137 SER n 3 138 THR n 3 139 GLU n 3 140 ILE n 3 141 TYR n 3 142 GLN n 3 143 ALA n 3 144 GLY n 3 145 SER n 3 146 THR n 3 147 PRO n 3 148 CYS n 3 149 ASN n 3 150 GLY n 3 151 VAL n 3 152 GLU n 3 153 GLY n 3 154 PHE n 3 155 ASN n 3 156 CYS n 3 157 TYR n 3 158 PHE n 3 159 PRO n 3 160 LEU n 3 161 GLN n 3 162 SER n 3 163 TYR n 3 164 GLY n 3 165 PHE n 3 166 GLN n 3 167 PRO n 3 168 THR n 3 169 ASN n 3 170 GLY n 3 171 VAL n 3 172 GLY n 3 173 TYR n 3 174 GLN n 3 175 PRO n 3 176 TYR n 3 177 ARG n 3 178 VAL n 3 179 VAL n 3 180 VAL n 3 181 LEU n 3 182 SER n 3 183 PHE n 3 184 GLU n 3 185 LEU n 3 186 LEU n 3 187 HIS n 3 188 ALA n 3 189 PRO n 3 190 ALA n 3 191 THR n 3 192 VAL n 3 193 CYS n 3 194 GLY n 3 195 PRO n 3 196 LYS n 3 197 LYS n 3 198 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 138 mouse ? ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 127 mouse ? ? ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 198 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 TRP 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 TRP 5 5 ? ? ? A . n A 1 6 ILE 6 6 ? ? ? A . n A 1 7 PHE 7 7 ? ? ? A . n A 1 8 LEU 8 8 ? ? ? A . n A 1 9 PHE 9 9 ? ? ? A . n A 1 10 LEU 10 10 ? ? ? A . n A 1 11 LEU 11 11 ? ? ? A . n A 1 12 SER 12 12 ? ? ? A . n A 1 13 GLY 13 13 ? ? ? A . n A 1 14 THR 14 14 ? ? ? A . n A 1 15 ALA 15 15 ? ? ? A . n A 1 16 GLY 16 16 ? ? ? A . n A 1 17 VAL 17 17 ? ? ? A . n A 1 18 LEU 18 18 ? ? ? A . n A 1 19 SER 19 19 ? ? ? A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 TRP 55 55 55 TRP TRP A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 MET 100 100 100 MET MET A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 TRP 128 128 128 TRP TRP A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 GLN 130 130 130 GLN GLN A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 SER 138 138 138 SER SER A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 ARG 2 2 ? ? ? B . n B 2 3 VAL 3 3 ? ? ? B . n B 2 4 PRO 4 4 ? ? ? B . n B 2 5 ALA 5 5 ? ? ? B . n B 2 6 HIS 6 6 ? ? ? B . n B 2 7 VAL 7 7 ? ? ? B . n B 2 8 PHE 8 8 ? ? ? B . n B 2 9 GLY 9 9 ? ? ? B . n B 2 10 PHE 10 10 ? ? ? B . n B 2 11 LEU 11 11 ? ? ? B . n B 2 12 LEU 12 12 ? ? ? B . n B 2 13 LEU 13 13 ? ? ? B . n B 2 14 TRP 14 14 ? ? ? B . n B 2 15 PHE 15 15 ? ? ? B . n B 2 16 PRO 16 16 ? ? ? B . n B 2 17 GLY 17 17 ? ? ? B . n B 2 18 THR 18 18 ? ? ? B . n B 2 19 ARG 19 19 ? ? ? B . n B 2 20 CYS 20 20 ? ? ? B . n B 2 21 ASP 21 21 ? ? ? B . n B 2 22 ILE 22 22 22 ILE ILE B . n B 2 23 GLN 23 23 23 GLN GLN B . n B 2 24 MET 24 24 24 MET MET B . n B 2 25 THR 25 25 25 THR THR B . n B 2 26 GLN 26 26 26 GLN GLN B . n B 2 27 SER 27 27 27 SER SER B . n B 2 28 PRO 28 28 28 PRO PRO B . n B 2 29 SER 29 29 29 SER SER B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 LEU 31 31 31 LEU LEU B . n B 2 32 SER 32 32 32 SER SER B . n B 2 33 ALA 33 33 33 ALA ALA B . n B 2 34 SER 34 34 34 SER SER B . n B 2 35 LEU 35 35 35 LEU LEU B . n B 2 36 GLY 36 36 36 GLY GLY B . n B 2 37 GLU 37 37 37 GLU GLU B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 VAL 39 39 39 VAL VAL B . n B 2 40 SER 40 40 40 SER SER B . n B 2 41 LEU 41 41 41 LEU LEU B . n B 2 42 ILE 42 42 42 ILE ILE B . n B 2 43 CYS 43 43 43 CYS CYS B . n B 2 44 ARG 44 44 44 ARG ARG B . n B 2 45 ALA 45 45 45 ALA ALA B . n B 2 46 SER 46 46 46 SER SER B . n B 2 47 GLN 47 47 47 GLN GLN B . n B 2 48 GLU 48 48 48 GLU GLU B . n B 2 49 ILE 49 49 49 ILE ILE B . n B 2 50 SER 50 50 50 SER SER B . n B 2 51 GLY 51 51 51 GLY GLY B . n B 2 52 TYR 52 52 52 TYR TYR B . n B 2 53 LEU 53 53 53 LEU LEU B . n B 2 54 SER 54 54 54 SER SER B . n B 2 55 TRP 55 55 55 TRP TRP B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 GLN 57 57 57 GLN GLN B . n B 2 58 GLN 58 58 58 GLN GLN B . n B 2 59 LYS 59 59 59 LYS LYS B . n B 2 60 PRO 60 60 60 PRO PRO B . n B 2 61 ASP 61 61 61 ASP ASP B . n B 2 62 GLY 62 62 62 GLY GLY B . n B 2 63 THR 63 63 63 THR THR B . n B 2 64 ILE 64 64 64 ILE ILE B . n B 2 65 LYS 65 65 65 LYS LYS B . n B 2 66 ARG 66 66 66 ARG ARG B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 ILE 68 68 68 ILE ILE B . n B 2 69 TYR 69 69 69 TYR TYR B . n B 2 70 ALA 70 70 70 ALA ALA B . n B 2 71 ALA 71 71 71 ALA ALA B . n B 2 72 SER 72 72 72 SER SER B . n B 2 73 THR 73 73 73 THR THR B . n B 2 74 LEU 74 74 74 LEU LEU B . n B 2 75 ASP 75 75 75 ASP ASP B . n B 2 76 SER 76 76 76 SER SER B . n B 2 77 GLY 77 77 77 GLY GLY B . n B 2 78 VAL 78 78 78 VAL VAL B . n B 2 79 PRO 79 79 79 PRO PRO B . n B 2 80 LYS 80 80 80 LYS LYS B . n B 2 81 ARG 81 81 81 ARG ARG B . n B 2 82 PHE 82 82 82 PHE PHE B . n B 2 83 SER 83 83 83 SER SER B . n B 2 84 GLY 84 84 84 GLY GLY B . n B 2 85 SER 85 85 85 SER SER B . n B 2 86 ARG 86 86 86 ARG ARG B . n B 2 87 SER 87 87 87 SER SER B . n B 2 88 GLY 88 88 88 GLY GLY B . n B 2 89 SER 89 89 89 SER SER B . n B 2 90 GLU 90 90 90 GLU GLU B . n B 2 91 TYR 91 91 91 TYR TYR B . n B 2 92 SER 92 92 92 SER SER B . n B 2 93 LEU 93 93 93 LEU LEU B . n B 2 94 THR 94 94 94 THR THR B . n B 2 95 ILE 95 95 95 ILE ILE B . n B 2 96 SER 96 96 96 SER SER B . n B 2 97 SER 97 97 97 SER SER B . n B 2 98 PRO 98 98 98 PRO PRO B . n B 2 99 GLU 99 99 99 GLU GLU B . n B 2 100 SER 100 100 100 SER SER B . n B 2 101 GLU 101 101 101 GLU GLU B . n B 2 102 ASP 102 102 102 ASP ASP B . n B 2 103 PHE 103 103 103 PHE PHE B . n B 2 104 ALA 104 104 104 ALA ALA B . n B 2 105 ASP 105 105 105 ASP ASP B . n B 2 106 TYR 106 106 106 TYR TYR B . n B 2 107 TYR 107 107 107 TYR TYR B . n B 2 108 CYS 108 108 108 CYS CYS B . n B 2 109 LEU 109 109 109 LEU LEU B . n B 2 110 GLN 110 110 110 GLN GLN B . n B 2 111 TYR 111 111 111 TYR TYR B . n B 2 112 ALA 112 112 112 ALA ALA B . n B 2 113 SER 113 113 113 SER SER B . n B 2 114 TYR 114 114 114 TYR TYR B . n B 2 115 PRO 115 115 115 PRO PRO B . n B 2 116 TRP 116 116 116 TRP TRP B . n B 2 117 THR 117 117 117 THR THR B . n B 2 118 PHE 118 118 118 PHE PHE B . n B 2 119 GLY 119 119 119 GLY GLY B . n B 2 120 GLY 120 120 120 GLY GLY B . n B 2 121 GLY 121 121 121 GLY GLY B . n B 2 122 THR 122 122 122 THR THR B . n B 2 123 LYS 123 123 123 LYS LYS B . n B 2 124 LEU 124 124 124 LEU LEU B . n B 2 125 GLU 125 125 125 GLU GLU B . n B 2 126 ILE 126 126 126 ILE ILE B . n B 2 127 LYS 127 127 127 LYS LYS B . n C 3 1 THR 1 333 333 THR THR C . n C 3 2 ASN 2 334 334 ASN ASN C . n C 3 3 LEU 3 335 335 LEU LEU C . n C 3 4 CYS 4 336 336 CYS CYS C . n C 3 5 PRO 5 337 337 PRO PRO C . n C 3 6 PHE 6 338 338 PHE PHE C . n C 3 7 GLY 7 339 339 GLY GLY C . n C 3 8 GLU 8 340 340 GLU GLU C . n C 3 9 VAL 9 341 341 VAL VAL C . n C 3 10 PHE 10 342 342 PHE PHE C . n C 3 11 ASN 11 343 343 ASN ASN C . n C 3 12 ALA 12 344 344 ALA ALA C . n C 3 13 THR 13 345 345 THR THR C . n C 3 14 ARG 14 346 346 ARG ARG C . n C 3 15 PHE 15 347 347 PHE PHE C . n C 3 16 ALA 16 348 348 ALA ALA C . n C 3 17 SER 17 349 349 SER SER C . n C 3 18 VAL 18 350 350 VAL VAL C . n C 3 19 TYR 19 351 351 TYR TYR C . n C 3 20 ALA 20 352 352 ALA ALA C . n C 3 21 TRP 21 353 353 TRP TRP C . n C 3 22 ASN 22 354 354 ASN ASN C . n C 3 23 ARG 23 355 355 ARG ARG C . n C 3 24 LYS 24 356 356 LYS LYS C . n C 3 25 ARG 25 357 357 ARG ARG C . n C 3 26 ILE 26 358 358 ILE ILE C . n C 3 27 SER 27 359 359 SER SER C . n C 3 28 ASN 28 360 360 ASN ASN C . n C 3 29 CYS 29 361 361 CYS CYS C . n C 3 30 VAL 30 362 362 VAL VAL C . n C 3 31 ALA 31 363 363 ALA ALA C . n C 3 32 ASP 32 364 364 ASP ASP C . n C 3 33 TYR 33 365 365 TYR TYR C . n C 3 34 SER 34 366 366 SER SER C . n C 3 35 VAL 35 367 367 VAL VAL C . n C 3 36 LEU 36 368 368 LEU LEU C . n C 3 37 TYR 37 369 369 TYR TYR C . n C 3 38 ASN 38 370 370 ASN ASN C . n C 3 39 SER 39 371 371 SER SER C . n C 3 40 ALA 40 372 372 ALA ALA C . n C 3 41 SER 41 373 373 SER SER C . n C 3 42 PHE 42 374 374 PHE PHE C . n C 3 43 SER 43 375 375 SER SER C . n C 3 44 THR 44 376 376 THR THR C . n C 3 45 PHE 45 377 377 PHE PHE C . n C 3 46 LYS 46 378 378 LYS LYS C . n C 3 47 CYS 47 379 379 CYS CYS C . n C 3 48 TYR 48 380 380 TYR TYR C . n C 3 49 GLY 49 381 381 GLY GLY C . n C 3 50 VAL 50 382 382 VAL VAL C . n C 3 51 SER 51 383 383 SER SER C . n C 3 52 PRO 52 384 384 PRO PRO C . n C 3 53 THR 53 385 385 THR THR C . n C 3 54 LYS 54 386 386 LYS LYS C . n C 3 55 LEU 55 387 387 LEU LEU C . n C 3 56 ASN 56 388 388 ASN ASN C . n C 3 57 ASP 57 389 389 ASP ASP C . n C 3 58 LEU 58 390 390 LEU LEU C . n C 3 59 CYS 59 391 391 CYS CYS C . n C 3 60 PHE 60 392 392 PHE PHE C . n C 3 61 THR 61 393 393 THR THR C . n C 3 62 ASN 62 394 394 ASN ASN C . n C 3 63 VAL 63 395 395 VAL VAL C . n C 3 64 TYR 64 396 396 TYR TYR C . n C 3 65 ALA 65 397 397 ALA ALA C . n C 3 66 ASP 66 398 398 ASP ASP C . n C 3 67 SER 67 399 399 SER SER C . n C 3 68 PHE 68 400 400 PHE PHE C . n C 3 69 VAL 69 401 401 VAL VAL C . n C 3 70 ILE 70 402 402 ILE ILE C . n C 3 71 ARG 71 403 403 ARG ARG C . n C 3 72 GLY 72 404 404 GLY GLY C . n C 3 73 ASP 73 405 405 ASP ASP C . n C 3 74 GLU 74 406 406 GLU GLU C . n C 3 75 VAL 75 407 407 VAL VAL C . n C 3 76 ARG 76 408 408 ARG ARG C . n C 3 77 GLN 77 409 409 GLN GLN C . n C 3 78 ILE 78 410 410 ILE ILE C . n C 3 79 ALA 79 411 411 ALA ALA C . n C 3 80 PRO 80 412 412 PRO PRO C . n C 3 81 GLY 81 413 413 GLY GLY C . n C 3 82 GLN 82 414 414 GLN GLN C . n C 3 83 THR 83 415 415 THR THR C . n C 3 84 GLY 84 416 416 GLY GLY C . n C 3 85 LYS 85 417 417 LYS LYS C . n C 3 86 ILE 86 418 418 ILE ILE C . n C 3 87 ALA 87 419 419 ALA ALA C . n C 3 88 ASP 88 420 420 ASP ASP C . n C 3 89 TYR 89 421 421 TYR TYR C . n C 3 90 ASN 90 422 422 ASN ASN C . n C 3 91 TYR 91 423 423 TYR TYR C . n C 3 92 LYS 92 424 424 LYS LYS C . n C 3 93 LEU 93 425 425 LEU LEU C . n C 3 94 PRO 94 426 426 PRO PRO C . n C 3 95 ASP 95 427 427 ASP ASP C . n C 3 96 ASP 96 428 428 ASP ASP C . n C 3 97 PHE 97 429 429 PHE PHE C . n C 3 98 THR 98 430 430 THR THR C . n C 3 99 GLY 99 431 431 GLY GLY C . n C 3 100 CYS 100 432 432 CYS CYS C . n C 3 101 VAL 101 433 433 VAL VAL C . n C 3 102 ILE 102 434 434 ILE ILE C . n C 3 103 ALA 103 435 435 ALA ALA C . n C 3 104 TRP 104 436 436 TRP TRP C . n C 3 105 ASN 105 437 437 ASN ASN C . n C 3 106 SER 106 438 438 SER SER C . n C 3 107 ASN 107 439 439 ASN ASN C . n C 3 108 ASN 108 440 440 ASN ASN C . n C 3 109 LEU 109 441 441 LEU LEU C . n C 3 110 ASP 110 442 442 ASP ASP C . n C 3 111 SER 111 443 443 SER SER C . n C 3 112 LYS 112 444 444 LYS LYS C . n C 3 113 VAL 113 445 445 VAL VAL C . n C 3 114 GLY 114 446 446 GLY GLY C . n C 3 115 GLY 115 447 447 GLY GLY C . n C 3 116 ASN 116 448 448 ASN ASN C . n C 3 117 TYR 117 449 449 TYR TYR C . n C 3 118 ASN 118 450 450 ASN ASN C . n C 3 119 TYR 119 451 451 TYR TYR C . n C 3 120 LEU 120 452 452 LEU LEU C . n C 3 121 TYR 121 453 453 TYR TYR C . n C 3 122 ARG 122 454 454 ARG ARG C . n C 3 123 LEU 123 455 455 LEU LEU C . n C 3 124 PHE 124 456 456 PHE PHE C . n C 3 125 ARG 125 457 457 ARG ARG C . n C 3 126 LYS 126 458 458 LYS LYS C . n C 3 127 SER 127 459 459 SER SER C . n C 3 128 ASN 128 460 460 ASN ASN C . n C 3 129 LEU 129 461 461 LEU LEU C . n C 3 130 LYS 130 462 462 LYS LYS C . n C 3 131 PRO 131 463 463 PRO PRO C . n C 3 132 PHE 132 464 464 PHE PHE C . n C 3 133 GLU 133 465 465 GLU GLU C . n C 3 134 ARG 134 466 466 ARG ARG C . n C 3 135 ASP 135 467 467 ASP ASP C . n C 3 136 ILE 136 468 468 ILE ILE C . n C 3 137 SER 137 469 469 SER SER C . n C 3 138 THR 138 470 470 THR THR C . n C 3 139 GLU 139 471 471 GLU GLU C . n C 3 140 ILE 140 472 472 ILE ILE C . n C 3 141 TYR 141 473 473 TYR TYR C . n C 3 142 GLN 142 474 474 GLN GLN C . n C 3 143 ALA 143 475 475 ALA ALA C . n C 3 144 GLY 144 476 476 GLY GLY C . n C 3 145 SER 145 477 477 SER SER C . n C 3 146 THR 146 478 478 THR THR C . n C 3 147 PRO 147 479 479 PRO PRO C . n C 3 148 CYS 148 480 480 CYS CYS C . n C 3 149 ASN 149 481 481 ASN ASN C . n C 3 150 GLY 150 482 482 GLY GLY C . n C 3 151 VAL 151 483 483 VAL VAL C . n C 3 152 GLU 152 484 484 GLU GLU C . n C 3 153 GLY 153 485 485 GLY GLY C . n C 3 154 PHE 154 486 486 PHE PHE C . n C 3 155 ASN 155 487 487 ASN ASN C . n C 3 156 CYS 156 488 488 CYS CYS C . n C 3 157 TYR 157 489 489 TYR TYR C . n C 3 158 PHE 158 490 490 PHE PHE C . n C 3 159 PRO 159 491 491 PRO PRO C . n C 3 160 LEU 160 492 492 LEU LEU C . n C 3 161 GLN 161 493 493 GLN GLN C . n C 3 162 SER 162 494 494 SER SER C . n C 3 163 TYR 163 495 495 TYR TYR C . n C 3 164 GLY 164 496 496 GLY GLY C . n C 3 165 PHE 165 497 497 PHE PHE C . n C 3 166 GLN 166 498 498 GLN GLN C . n C 3 167 PRO 167 499 499 PRO PRO C . n C 3 168 THR 168 500 500 THR THR C . n C 3 169 ASN 169 501 501 ASN ASN C . n C 3 170 GLY 170 502 502 GLY GLY C . n C 3 171 VAL 171 503 503 VAL VAL C . n C 3 172 GLY 172 504 504 GLY GLY C . n C 3 173 TYR 173 505 505 TYR TYR C . n C 3 174 GLN 174 506 506 GLN GLN C . n C 3 175 PRO 175 507 507 PRO PRO C . n C 3 176 TYR 176 508 508 TYR TYR C . n C 3 177 ARG 177 509 509 ARG ARG C . n C 3 178 VAL 178 510 510 VAL VAL C . n C 3 179 VAL 179 511 511 VAL VAL C . n C 3 180 VAL 180 512 512 VAL VAL C . n C 3 181 LEU 181 513 513 LEU LEU C . n C 3 182 SER 182 514 514 SER SER C . n C 3 183 PHE 183 515 515 PHE PHE C . n C 3 184 GLU 184 516 516 GLU GLU C . n C 3 185 LEU 185 517 517 LEU LEU C . n C 3 186 LEU 186 518 518 LEU LEU C . n C 3 187 HIS 187 519 519 HIS HIS C . n C 3 188 ALA 188 520 520 ALA ALA C . n C 3 189 PRO 189 521 521 PRO PRO C . n C 3 190 ALA 190 522 522 ALA ALA C . n C 3 191 THR 191 523 523 THR THR C . n C 3 192 VAL 192 524 524 VAL VAL C . n C 3 193 CYS 193 525 525 CYS CYS C . n C 3 194 GLY 194 526 526 GLY GLY C . n C 3 195 PRO 195 527 527 PRO PRO C . n C 3 196 LYS 196 528 528 LYS LYS C . n C 3 197 LYS 197 529 ? ? ? C . n C 3 198 SER 198 530 ? ? ? C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 2041 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.pdb_ins_code . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20.1_4487: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8GJN _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GJN _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8GJN _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 28506 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.704 ? 38772 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 11.300 ? 4359 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 4674 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 4857 ? f_plane_restr ? ? # _struct.entry_id 8GJN _struct.title '17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GJN _struct_keywords.text 'VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8GJN 8GJN ? 1 ? 1 2 PDB 8GJN 8GJN ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;TNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAP GQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPL QSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; 333 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8GJN A 1 ? 138 ? 8GJN 1 ? 138 ? 1 138 2 2 8GJN B 1 ? 127 ? 8GJN 1 ? 127 ? 1 127 3 3 8GJN C 1 ? 198 ? P0DTC2 333 ? 530 ? 333 530 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 47 ? TYR A 51 ? THR A 47 TYR A 51 5 ? 5 HELX_P HELX_P2 AA2 LYS A 80 ? GLY A 85 ? LYS A 80 GLY A 85 1 ? 6 HELX_P HELX_P3 AA3 PHE C 6 ? ASN C 11 ? PHE C 338 ASN C 343 1 ? 6 HELX_P HELX_P4 AA4 SER C 17 ? TRP C 21 ? SER C 349 TRP C 353 5 ? 5 HELX_P HELX_P5 AA5 ASP C 32 ? ASN C 38 ? ASP C 364 ASN C 370 1 ? 7 HELX_P HELX_P6 AA6 SER C 51 ? ASP C 57 ? SER C 383 ASP C 389 5 ? 7 HELX_P HELX_P7 AA7 GLU C 74 ? ALA C 79 ? GLU C 406 ALA C 411 5 ? 6 HELX_P HELX_P8 AA8 GLY C 84 ? ASN C 90 ? GLY C 416 ASN C 422 1 ? 7 HELX_P HELX_P9 AA9 SER C 106 ? SER C 111 ? SER C 438 SER C 443 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 41 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 41 A CYS 115 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf2 disulf ? ? B CYS 43 SG ? ? ? 1_555 B CYS 108 SG ? ? B CYS 43 B CYS 108 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf3 disulf ? ? C CYS 4 SG ? ? ? 1_555 C CYS 29 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf4 disulf ? ? C CYS 47 SG ? ? ? 1_555 C CYS 100 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf5 disulf ? ? C CYS 59 SG ? ? ? 1_555 C CYS 193 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf6 disulf ? ? C CYS 148 SG ? ? ? 1_555 C CYS 156 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.036 ? ? covale1 covale one ? C ASN 11 ND2 ? ? ? 1_555 D NAG . C1 ? ? C ASN 343 C NAG 601 1_555 ? ? ? ? ? ? ? 1.431 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN C 11 ? NAG C 601 ? 1_555 ASN C 343 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 CYS A 41 ? CYS A 115 ? CYS A 41 ? 1_555 CYS A 115 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 43 ? CYS B 108 ? CYS B 43 ? 1_555 CYS B 108 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS C 4 ? CYS C 29 ? CYS C 336 ? 1_555 CYS C 361 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS C 47 ? CYS C 100 ? CYS C 379 ? 1_555 CYS C 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS C 59 ? CYS C 193 ? CYS C 391 ? 1_555 CYS C 525 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS C 148 ? CYS C 156 ? CYS C 480 ? 1_555 CYS C 488 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 114 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 114 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 115 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 115 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -22.34 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 5 ? AA5 ? 4 ? AA6 ? 5 ? AA7 ? 2 ? AA8 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 29 ? LEU A 30 ? GLU A 29 LEU A 30 AA1 2 THR A 132 ? THR A 135 ? THR A 132 THR A 135 AA1 3 ALA A 111 ? ASP A 118 ? ALA A 111 ASP A 118 AA1 4 SER A 52 ? GLN A 58 ? SER A 52 GLN A 58 AA1 5 LEU A 64 ? ASN A 71 ? LEU A 64 ASN A 71 AA1 6 SER A 76 ? TYR A 79 ? SER A 76 TYR A 79 AA2 1 VAL A 37 ? LYS A 42 ? VAL A 37 LYS A 42 AA2 2 THR A 97 ? LEU A 102 ? THR A 97 LEU A 102 AA2 3 ALA A 87 ? ASP A 92 ? ALA A 87 ASP A 92 AA3 1 THR B 25 ? GLN B 26 ? THR B 25 GLN B 26 AA3 2 VAL B 39 ? ARG B 44 ? VAL B 39 ARG B 44 AA3 3 GLU B 90 ? ILE B 95 ? GLU B 90 ILE B 95 AA3 4 ARG B 86 ? SER B 87 ? ARG B 86 SER B 87 AA4 1 SER B 30 ? ALA B 33 ? SER B 30 ALA B 33 AA4 2 THR B 122 ? ILE B 126 ? THR B 122 ILE B 126 AA4 3 ASP B 105 ? GLN B 110 ? ASP B 105 GLN B 110 AA4 4 SER B 54 ? GLN B 58 ? SER B 54 GLN B 58 AA4 5 ILE B 64 ? ILE B 68 ? ILE B 64 ILE B 68 AA5 1 SER B 30 ? ALA B 33 ? SER B 30 ALA B 33 AA5 2 THR B 122 ? ILE B 126 ? THR B 122 ILE B 126 AA5 3 ASP B 105 ? GLN B 110 ? ASP B 105 GLN B 110 AA5 4 THR B 117 ? PHE B 118 ? THR B 117 PHE B 118 AA6 1 ASN C 22 ? ILE C 26 ? ASN C 354 ILE C 358 AA6 2 ASN C 62 ? ARG C 71 ? ASN C 394 ARG C 403 AA6 3 PRO C 175 ? GLU C 184 ? PRO C 507 GLU C 516 AA6 4 GLY C 99 ? ASN C 105 ? GLY C 431 ASN C 437 AA6 5 THR C 44 ? CYS C 47 ? THR C 376 CYS C 379 AA7 1 CYS C 59 ? PHE C 60 ? CYS C 391 PHE C 392 AA7 2 VAL C 192 ? CYS C 193 ? VAL C 524 CYS C 525 AA8 1 LEU C 120 ? ARG C 122 ? LEU C 452 ARG C 454 AA8 2 LEU C 160 ? SER C 162 ? LEU C 492 SER C 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 29 ? N GLU A 29 O THR A 135 ? O THR A 135 AA1 2 3 O THR A 132 ? O THR A 132 N TYR A 113 ? N TYR A 113 AA1 3 4 O VAL A 112 ? O VAL A 112 N GLN A 58 ? N GLN A 58 AA1 4 5 N LYS A 57 ? N LYS A 57 O GLU A 65 ? O GLU A 65 AA1 5 6 N GLY A 69 ? N GLY A 69 O THR A 78 ? O THR A 78 AA2 1 2 N ILE A 39 ? N ILE A 39 O MET A 100 ? O MET A 100 AA2 2 3 O PHE A 99 ? O PHE A 99 N THR A 90 ? N THR A 90 AA3 1 2 N THR B 25 ? N THR B 25 O ARG B 44 ? O ARG B 44 AA3 2 3 N CYS B 43 ? N CYS B 43 O TYR B 91 ? O TYR B 91 AA3 3 4 O GLU B 90 ? O GLU B 90 N SER B 87 ? N SER B 87 AA4 1 2 N LEU B 31 ? N LEU B 31 O LYS B 123 ? O LYS B 123 AA4 2 3 O THR B 122 ? O THR B 122 N TYR B 106 ? N TYR B 106 AA4 3 4 O ASP B 105 ? O ASP B 105 N GLN B 58 ? N GLN B 58 AA4 4 5 N TRP B 55 ? N TRP B 55 O LEU B 67 ? O LEU B 67 AA5 1 2 N LEU B 31 ? N LEU B 31 O LYS B 123 ? O LYS B 123 AA5 2 3 O THR B 122 ? O THR B 122 N TYR B 106 ? N TYR B 106 AA5 3 4 N GLN B 110 ? N GLN B 110 O THR B 117 ? O THR B 117 AA6 1 2 N LYS C 24 ? N LYS C 356 O ALA C 65 ? O ALA C 397 AA6 2 3 N TYR C 64 ? N TYR C 396 O SER C 182 ? O SER C 514 AA6 3 4 O VAL C 179 ? O VAL C 511 N ILE C 102 ? N ILE C 434 AA6 4 5 O VAL C 101 ? O VAL C 433 N LYS C 46 ? N LYS C 378 AA7 1 2 N PHE C 60 ? N PHE C 392 O VAL C 192 ? O VAL C 524 AA8 1 2 N TYR C 121 ? N TYR C 453 O GLN C 161 ? O GLN C 493 # _pdbx_entry_details.entry_id 8GJN _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 343 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O5 _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 NAG _pdbx_validate_close_contact.auth_seq_id_2 601 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 86 ? ? -143.68 -23.56 2 1 LEU A 105 ? ? -68.16 99.58 3 1 ASP A 109 ? ? -103.50 62.53 4 1 VAL A 125 ? ? 35.55 53.71 5 1 ASP A 126 ? ? -98.41 -64.94 6 1 LEU B 53 ? ? -172.84 145.07 7 1 ASP B 61 ? ? -97.56 52.13 8 1 ALA B 70 ? ? 57.10 -142.97 9 1 SER B 76 ? ? 51.44 -124.52 10 1 LYS B 80 ? ? 47.54 -133.18 11 1 CYS C 336 ? ? -47.98 157.15 12 1 PRO C 337 ? ? -77.53 48.00 13 1 VAL C 341 ? ? -107.23 -60.79 14 1 ASN C 343 ? ? -113.90 52.86 15 1 ASN C 422 ? ? -129.61 -53.90 16 1 THR C 430 ? ? -103.07 61.09 17 1 PHE C 464 ? ? 56.84 19.30 18 1 THR C 523 ? ? -121.03 -54.47 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8GJN _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7KRR _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 14-1211 _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range 14-1211 _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7KRR _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8GJN _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.6 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 439265 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name '17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer' _em_entity_assembly.details '17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 8GJN _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8GJN _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8GJN _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A TRP 3 ? A TRP 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A TRP 5 ? A TRP 5 6 1 Y 1 A ILE 6 ? A ILE 6 7 1 Y 1 A PHE 7 ? A PHE 7 8 1 Y 1 A LEU 8 ? A LEU 8 9 1 Y 1 A PHE 9 ? A PHE 9 10 1 Y 1 A LEU 10 ? A LEU 10 11 1 Y 1 A LEU 11 ? A LEU 11 12 1 Y 1 A SER 12 ? A SER 12 13 1 Y 1 A GLY 13 ? A GLY 13 14 1 Y 1 A THR 14 ? A THR 14 15 1 Y 1 A ALA 15 ? A ALA 15 16 1 Y 1 A GLY 16 ? A GLY 16 17 1 Y 1 A VAL 17 ? A VAL 17 18 1 Y 1 A LEU 18 ? A LEU 18 19 1 Y 1 A SER 19 ? A SER 19 20 1 Y 1 B MET 1 ? B MET 1 21 1 Y 1 B ARG 2 ? B ARG 2 22 1 Y 1 B VAL 3 ? B VAL 3 23 1 Y 1 B PRO 4 ? B PRO 4 24 1 Y 1 B ALA 5 ? B ALA 5 25 1 Y 1 B HIS 6 ? B HIS 6 26 1 Y 1 B VAL 7 ? B VAL 7 27 1 Y 1 B PHE 8 ? B PHE 8 28 1 Y 1 B GLY 9 ? B GLY 9 29 1 Y 1 B PHE 10 ? B PHE 10 30 1 Y 1 B LEU 11 ? B LEU 11 31 1 Y 1 B LEU 12 ? B LEU 12 32 1 Y 1 B LEU 13 ? B LEU 13 33 1 Y 1 B TRP 14 ? B TRP 14 34 1 Y 1 B PHE 15 ? B PHE 15 35 1 Y 1 B PRO 16 ? B PRO 16 36 1 Y 1 B GLY 17 ? B GLY 17 37 1 Y 1 B THR 18 ? B THR 18 38 1 Y 1 B ARG 19 ? B ARG 19 39 1 Y 1 B CYS 20 ? B CYS 20 40 1 Y 1 B ASP 21 ? B ASP 21 41 1 Y 1 C LYS 529 ? C LYS 197 42 1 Y 1 C SER 530 ? C SER 198 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_admin.current_status REL _em_admin.deposition_date 2023-03-16 _em_admin.deposition_site RCSB _em_admin.entry_id 8GJN _em_admin.last_update 2024-10-23 _em_admin.map_release_date 2023-04-05 _em_admin.title '17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 0.15 mol/L NaCl 1 'sodium chloride' 1 0.025 mol/L Tris-HCl 2 'Tris hydrochloride' 1 0.02 % DDM 3 n-dodecyl-D-maltopyranoside # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.1 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 54.442 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 3124974 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? RELION ? RECONSTRUCTION ? 13 1 ? ? RELION ? RECONSTRUCTION ? 14 1 ? ? cryoSPARC ? 'VOLUME SELECTION' ? 15 1 1 1 ? ? 'SERIES ALIGNMENT' ? 16 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 17 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 18 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 19 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 20 1 1 1 ? ? # _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Massachusetts Consortium on Pathogen Readiness (MassCPR)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7KRR # _atom_sites.entry_id 8GJN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_