HEADER IMMUNE SYSTEM 22-MAR-23 8GLG TITLE CRYSTAL STRUCTURE OF HUMAN CD1B IN COMPLEX WITH TITLE 2 PHOSPHATIDYLETHANOLAMINE C34:1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD1B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD1B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 17 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 18 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS IMMUNE SYSTEM, LIPID, CD1B, PHOSPHATIDYLETHANOLAMINE, PE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAHINE REVDAT 2 01-MAY-24 8GLG 1 JRNL REVDAT 1 20-SEP-23 8GLG 0 JRNL AUTH S.HUANG,A.SHAHINE,T.Y.CHENG,Y.L.CHEN,S.W.NG,G.R.BALAJI, JRNL AUTH 2 R.FARQUHAR,S.GRAS,C.S.HARDMAN,J.D.ALTMAN,N.TAHIRI, JRNL AUTH 3 A.J.MINNAARD,G.S.OGG,J.A.MAYFIELD,J.ROSSJOHN,D.B.MOODY JRNL TITL CD1 LIPIDOMES REVEAL LIPID-BINDING MOTIFS AND SIZE-BASED JRNL TITL 2 ANTIGEN-DISPLAY MECHANISMS. JRNL REF CELL V. 186 4583 2023 JRNL REFN ISSN 1097-4172 JRNL PMID 37725977 JRNL DOI 10.1016/J.CELL.2023.08.022 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 57375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2854 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.31 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1148 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2382 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1099 REMARK 3 BIN R VALUE (WORKING SET) : 0.2408 REMARK 3 BIN FREE R VALUE : 0.1892 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 236 REMARK 3 SOLVENT ATOMS : 541 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.04020 REMARK 3 B22 (A**2) : -1.75340 REMARK 3 B33 (A**2) : -0.28680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.099 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.092 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.090 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.087 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3411 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4649 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1570 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 566 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3411 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 450 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4336 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.00 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.53 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|4 - 109} REMARK 3 ORIGIN FOR THE GROUP (A): -1.1574 13.2792 -9.5157 REMARK 3 T TENSOR REMARK 3 T11: -0.0475 T22: -0.0214 REMARK 3 T33: -0.0359 T12: 0.0091 REMARK 3 T13: -0.0045 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.7154 L22: 1.0376 REMARK 3 L33: 0.9908 L12: 0.1062 REMARK 3 L13: 0.1716 L23: -0.3360 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.0008 S13: -0.0305 REMARK 3 S21: 0.0177 S22: -0.0457 S23: -0.1525 REMARK 3 S31: -0.0024 S32: 0.1179 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|110 - 175} REMARK 3 ORIGIN FOR THE GROUP (A): -5.2815 24.7835 -5.7396 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: -0.0323 REMARK 3 T33: -0.0289 T12: -0.0015 REMARK 3 T13: -0.0004 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.7265 L22: 0.4913 REMARK 3 L33: 3.6557 L12: -0.0079 REMARK 3 L13: 0.1658 L23: 0.7660 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0618 S13: 0.1585 REMARK 3 S21: -0.0465 S22: 0.0280 S23: -0.0797 REMARK 3 S31: -0.2820 S32: 0.0800 S33: -0.0381 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|176 - 283} REMARK 3 ORIGIN FOR THE GROUP (A): -32.5434 -2.1730 -17.2455 REMARK 3 T TENSOR REMARK 3 T11: -0.0020 T22: -0.0176 REMARK 3 T33: -0.0299 T12: -0.0228 REMARK 3 T13: -0.0041 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 2.0322 L22: 0.6307 REMARK 3 L33: 0.1962 L12: 1.0862 REMARK 3 L13: -0.0013 L23: -0.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.0444 S13: 0.0610 REMARK 3 S21: 0.0245 S22: -0.0207 S23: 0.0194 REMARK 3 S31: 0.0219 S32: -0.0205 S33: -0.0247 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|2 - 100} REMARK 3 ORIGIN FOR THE GROUP (A): -14.8990 -7.2358 -5.5419 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: -0.0905 REMARK 3 T33: -0.0640 T12: -0.0203 REMARK 3 T13: 0.0242 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.4275 L22: 2.0968 REMARK 3 L33: 2.2539 L12: 0.2654 REMARK 3 L13: -0.0239 L23: 0.8116 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0167 S13: -0.2187 REMARK 3 S21: 0.0458 S22: -0.1539 S23: 0.0643 REMARK 3 S31: 0.4515 S32: -0.0993 S33: 0.1632 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000273133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57434 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5L2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG3350, 0.1 M SODIUM IODIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.03700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.48950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.26450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.48950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.03700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.26450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 284 REMARK 465 ILE A 285 REMARK 465 PHE A 286 REMARK 465 GLU A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 GLU A 292 REMARK 465 TRP A 293 REMARK 465 HIS A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 MET B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 91 CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 21 CD CE NZ REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 LYS B 50 CD CE NZ REMARK 470 LYS B 77 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -119.45 59.48 REMARK 500 ASP A 33 -117.11 55.48 REMARK 500 PRO A 213 -178.64 -69.70 REMARK 500 TRP B 62 -1.54 76.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 L9Q A 601 REMARK 610 CUY A 603 DBREF 8GLG A 2 278 UNP P29016 CD1B_HUMAN 20 296 DBREF 8GLG B 3 101 UNP P61769 B2MG_HUMAN 21 119 SEQADV 8GLG GLY A 279 UNP P29016 EXPRESSION TAG SEQADV 8GLG SER A 280 UNP P29016 EXPRESSION TAG SEQADV 8GLG GLY A 281 UNP P29016 EXPRESSION TAG SEQADV 8GLG LEU A 282 UNP P29016 EXPRESSION TAG SEQADV 8GLG ASN A 283 UNP P29016 EXPRESSION TAG SEQADV 8GLG ASP A 284 UNP P29016 EXPRESSION TAG SEQADV 8GLG ILE A 285 UNP P29016 EXPRESSION TAG SEQADV 8GLG PHE A 286 UNP P29016 EXPRESSION TAG SEQADV 8GLG GLU A 287 UNP P29016 EXPRESSION TAG SEQADV 8GLG ALA A 288 UNP P29016 EXPRESSION TAG SEQADV 8GLG GLN A 289 UNP P29016 EXPRESSION TAG SEQADV 8GLG LYS A 290 UNP P29016 EXPRESSION TAG SEQADV 8GLG ILE A 291 UNP P29016 EXPRESSION TAG SEQADV 8GLG GLU A 292 UNP P29016 EXPRESSION TAG SEQADV 8GLG TRP A 293 UNP P29016 EXPRESSION TAG SEQADV 8GLG HIS A 294 UNP P29016 EXPRESSION TAG SEQADV 8GLG GLU A 295 UNP P29016 EXPRESSION TAG SEQADV 8GLG HIS A 296 UNP P29016 EXPRESSION TAG SEQADV 8GLG HIS A 297 UNP P29016 EXPRESSION TAG SEQADV 8GLG HIS A 298 UNP P29016 EXPRESSION TAG SEQADV 8GLG HIS A 299 UNP P29016 EXPRESSION TAG SEQADV 8GLG HIS A 300 UNP P29016 EXPRESSION TAG SEQADV 8GLG HIS A 301 UNP P29016 EXPRESSION TAG SEQADV 8GLG PRO B 1 UNP P61769 EXPRESSION TAG SEQADV 8GLG LYS B 2 UNP P61769 EXPRESSION TAG SEQRES 1 A 300 HIS ALA PHE GLN GLY PRO THR SER PHE HIS VAL ILE GLN SEQRES 2 A 300 THR SER SER PHE THR ASN SER THR TRP ALA GLN THR GLN SEQRES 3 A 300 GLY SER GLY TRP LEU ASP ASP LEU GLN ILE HIS GLY TRP SEQRES 4 A 300 ASP SER ASP SER GLY THR ALA ILE PHE LEU LYS PRO TRP SEQRES 5 A 300 SER LYS GLY ASN PHE SER ASP LYS GLU VAL ALA GLU LEU SEQRES 6 A 300 GLU GLU ILE PHE ARG VAL TYR ILE PHE GLY PHE ALA ARG SEQRES 7 A 300 GLU VAL GLN ASP PHE ALA GLY ASP PHE GLN MET LYS TYR SEQRES 8 A 300 PRO PHE GLU ILE GLN GLY ILE ALA GLY CYS GLU LEU HIS SEQRES 9 A 300 SER GLY GLY ALA ILE VAL SER PHE LEU ARG GLY ALA LEU SEQRES 10 A 300 GLY GLY LEU ASP PHE LEU SER VAL LYS ASN ALA SER CYS SEQRES 11 A 300 VAL PRO SER PRO GLU GLY GLY SER ARG ALA GLN LYS PHE SEQRES 12 A 300 CYS ALA LEU ILE ILE GLN TYR GLN GLY ILE MET GLU THR SEQRES 13 A 300 VAL ARG ILE LEU LEU TYR GLU THR CYS PRO ARG TYR LEU SEQRES 14 A 300 LEU GLY VAL LEU ASN ALA GLY LYS ALA ASP LEU GLN ARG SEQRES 15 A 300 GLN VAL LYS PRO GLU ALA TRP LEU SER SER GLY PRO SER SEQRES 16 A 300 PRO GLY PRO GLY ARG LEU GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 300 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 300 GLY GLU GLN GLU GLN GLN GLY THR GLN LEU GLY ASP ILE SEQRES 19 A 300 LEU PRO ASN ALA ASN TRP THR TRP TYR LEU ARG ALA THR SEQRES 20 A 300 LEU ASP VAL ALA ASP GLY GLU ALA ALA GLY LEU SER CYS SEQRES 21 A 300 ARG VAL LYS HIS SER SER LEU GLU GLY GLN ASP ILE ILE SEQRES 22 A 300 LEU TYR TRP ARG GLY SER GLY LEU ASN ASP ILE PHE GLU SEQRES 23 A 300 ALA GLN LYS ILE GLU TRP HIS GLU HIS HIS HIS HIS HIS SEQRES 24 A 300 HIS SEQRES 1 B 101 PRO LYS ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER SEQRES 2 B 101 ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN SEQRES 3 B 101 CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL SEQRES 4 B 101 ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU SEQRES 5 B 101 HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR SEQRES 6 B 101 LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP SEQRES 7 B 101 GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN SEQRES 8 B 101 PRO LYS ILE VAL LYS TRP ASP ARG ASP MET HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET FUC C 6 10 HET FUC C 7 10 HET NAG D 1 14 HET FUC D 2 10 HET NAG D 3 14 HET FUC D 4 10 HET L9Q A 601 49 HET NI A 602 1 HET CUY A 603 35 HET CL A 604 1 HET CL A 605 1 HET CL A 606 1 HET CL A 607 1 HET IOD A 608 1 HET EDO A 609 4 HET IOD B 201 1 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM L9Q (1S)-2-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1- HETNAM 2 L9Q [(OCTADECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE HETNAM NI NICKEL (II) ION HETNAM CUY TETRACOSYL OCTADECANOATE HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN L9Q 1-STEAROYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 5 L9Q C41 H80 N O8 P FORMUL 6 NI NI 2+ FORMUL 7 CUY C42 H84 O2 FORMUL 8 CL 4(CL 1-) FORMUL 12 IOD 2(I 1-) FORMUL 13 EDO 4(C2 H6 O2) FORMUL 18 HOH *541(H2 O) HELIX 1 AA1 SER A 59 ALA A 85 1 27 HELIX 2 AA2 GLY A 137 ILE A 149 1 13 HELIX 3 AA3 TYR A 151 GLU A 164 1 14 HELIX 4 AA4 GLU A 164 GLY A 177 1 14 HELIX 5 AA5 GLY A 177 GLN A 182 1 6 HELIX 6 AA6 GLY A 254 ALA A 256 5 3 HELIX 7 AA7 HIS A 265 GLU A 269 5 5 SHEET 1 AA1 8 THR A 46 PHE A 49 0 SHEET 2 AA1 8 LEU A 35 ASP A 41 -1 N ASP A 41 O THR A 46 SHEET 3 AA1 8 TRP A 23 LEU A 32 -1 N LEU A 32 O LEU A 35 SHEET 4 AA1 8 SER A 9 ASN A 20 -1 N HIS A 11 O TRP A 31 SHEET 5 AA1 8 PHE A 94 LEU A 104 -1 O PHE A 94 N PHE A 18 SHEET 6 AA1 8 ILE A 110 LEU A 118 -1 O ARG A 115 N ILE A 99 SHEET 7 AA1 8 LEU A 121 LYS A 127 -1 O PHE A 123 N GLY A 116 SHEET 8 AA1 8 SER A 130 PRO A 133 -1 O VAL A 132 N SER A 125 SHEET 1 AA2 4 GLU A 188 SER A 193 0 SHEET 2 AA2 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA2 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA2 4 GLN A 231 LEU A 232 -1 N GLN A 231 O THR A 248 SHEET 1 AA3 4 GLU A 188 SER A 193 0 SHEET 2 AA3 4 ARG A 201 PHE A 211 -1 O HIS A 207 N TRP A 190 SHEET 3 AA3 4 THR A 242 ALA A 252 -1 O VAL A 251 N LEU A 202 SHEET 4 AA3 4 LEU A 236 ASN A 238 -1 N LEU A 236 O TYR A 244 SHEET 1 AA4 4 GLN A 225 GLU A 226 0 SHEET 2 AA4 4 TRP A 217 ARG A 222 -1 N ARG A 222 O GLN A 225 SHEET 3 AA4 4 LEU A 259 LYS A 264 -1 O SER A 260 N MET A 221 SHEET 4 AA4 4 ILE A 273 TYR A 276 -1 O LEU A 275 N CYS A 261 SHEET 1 AA5 4 LYS B 8 SER B 13 0 SHEET 2 AA5 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA5 4 PHE B 64 PHE B 72 -1 O PHE B 72 N ASN B 23 SHEET 4 AA5 4 GLU B 52 HIS B 53 -1 N GLU B 52 O TYR B 69 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O PHE B 72 N ASN B 23 SHEET 4 AA6 4 SER B 57 PHE B 58 -1 N SER B 57 O TYR B 65 SHEET 1 AA7 4 GLU B 46 ARG B 47 0 SHEET 2 AA7 4 GLU B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA7 4 TYR B 80 ASN B 85 -1 O ALA B 81 N LEU B 42 SHEET 4 AA7 4 LYS B 93 LYS B 96 -1 O LYS B 93 N VAL B 84 SSBOND 1 CYS A 102 CYS A 166 1555 1555 2.09 SSBOND 2 CYS A 131 CYS A 145 1555 1555 2.07 SSBOND 3 CYS A 206 CYS A 261 1555 1555 2.03 SSBOND 4 CYS B 27 CYS B 82 1555 1555 2.03 LINK ND2 ASN A 20 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 57 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.43 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.39 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.39 LINK O3 NAG D 1 C1 FUC D 2 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 3 1555 1555 1.42 LINK O6 NAG D 1 C1 FUC D 4 1555 1555 1.41 LINK NI NI A 602 O HOH A 887 1555 1555 2.21 CISPEP 1 TYR A 92 PRO A 93 0 -1.92 CISPEP 2 TYR A 212 PRO A 213 0 -1.38 CISPEP 3 HIS B 33 PRO B 34 0 0.95 CRYST1 58.074 80.529 92.979 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010755 0.00000