HEADER VIRAL PROTEIN 25-AUG-22 8GP6 TITLE STRUCTURE OF THE VACCINIA VIRUS A16/G9 SUB-COMPLEX FROM THE TITLE 2 ORTHOPOXVIRUS ENTRY-FUSION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYRISTOYLATED PROTEIN G9; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: PROTEIN F1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VIRION MEMBRANE PROTEIN A16; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN WESTERN RESERVE); SOURCE 3 ORGANISM_COMMON: VACV, VACCINIA VIRUS (STRAIN WR); SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 STRAIN: WESTERN RESERVE; SOURCE 6 GENE: VACWR087, G9R; SOURCE 7 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN WESTERN RESERVE); SOURCE 11 ORGANISM_COMMON: VACV, VACCINIA VIRUS (STRAIN WR); SOURCE 12 ORGANISM_TAXID: 10254; SOURCE 13 STRAIN: WESTERN RESERVE; SOURCE 14 GENE: VACWR136, A16L; SOURCE 15 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 274590 KEYWDS THE COMPONENTS OF ENTRY-FUSION COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.W.LU,F.L.YANG,S.LIN REVDAT 2 03-APR-24 8GP6 1 REMARK REVDAT 1 17-MAY-23 8GP6 0 JRNL AUTH F.YANG,S.LIN,Z.CHEN,D.YUE,M.YANG,B.HE,Y.CAO,H.DONG,J.LI, JRNL AUTH 2 Q.ZHAO,G.LU JRNL TITL STRUCTURAL BASIS OF POXVIRUS A16/G9 BINDING FOR SUB-COMPLEX JRNL TITL 2 FORMATION. JRNL REF EMERG MICROBES INFECT V. 12 79351 2023 JRNL REFN ESSN 2222-1751 JRNL PMID 36757688 JRNL DOI 10.1080/22221751.2023.2179351 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 859 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.50000 REMARK 3 B22 (A**2) : 5.53000 REMARK 3 B33 (A**2) : -8.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.384 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.336 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4595 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4171 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6220 ; 1.584 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9645 ; 1.110 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 544 ; 6.571 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 237 ;37.240 ;23.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;23.388 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.058 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5205 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1109 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8GP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300031846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD 2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% V/V (+/-)-2-METHYL-2,4-PENTANEDIOL, REMARK 280 0.1 M CITRIC ACID PH 3.5, 20% W/V POLYETHYLENE GLYCOL 1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.00400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.95450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.00400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.95450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 VAL B 7 REMARK 465 ILE B 269 REMARK 465 VAL B 270 REMARK 465 ARG B 271 REMARK 465 CYS B 272 REMARK 465 ASN B 273 REMARK 465 THR B 274 REMARK 465 SER B 275 REMARK 465 VAL B 276 REMARK 465 ASN B 277 REMARK 465 ASN B 278 REMARK 465 LEU B 279 REMARK 465 GLN B 280 REMARK 465 MET B 281 REMARK 465 ASP B 282 REMARK 465 LYS B 283 REMARK 465 THR B 284 REMARK 465 SER B 285 REMARK 465 SER B 286 REMARK 465 LEU B 287 REMARK 465 ARG B 288 REMARK 465 LEU B 289 REMARK 465 SER B 290 REMARK 465 CYS B 291 REMARK 465 GLY B 292 REMARK 465 LEU B 293 REMARK 465 SER B 294 REMARK 465 ASN B 295 REMARK 465 SER B 296 REMARK 465 ASP B 297 REMARK 465 ARG B 298 REMARK 465 PHE B 299 REMARK 465 SER B 300 REMARK 465 THR B 301 REMARK 465 VAL B 302 REMARK 465 PRO B 303 REMARK 465 VAL B 304 REMARK 465 ASN B 305 REMARK 465 ARG B 306 REMARK 465 ALA B 307 REMARK 465 LYS B 308 REMARK 465 VAL B 309 REMARK 465 VAL B 310 REMARK 465 GLN B 311 REMARK 465 HIS B 312 REMARK 465 ASN B 313 REMARK 465 ILE B 314 REMARK 465 LYS B 315 REMARK 465 HIS B 316 REMARK 465 SER B 317 REMARK 465 PHE B 318 REMARK 465 ASP B 319 REMARK 465 TRP B 320 REMARK 465 SER B 321 REMARK 465 HIS B 322 REMARK 465 PRO B 323 REMARK 465 GLN B 324 REMARK 465 PHE B 325 REMARK 465 GLU B 326 REMARK 465 LYS B 327 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 LYS A 292 REMARK 465 TYR A 293 REMARK 465 VAL A 294 REMARK 465 GLY A 295 REMARK 465 CYS A 296 REMARK 465 THR A 297 REMARK 465 ILE A 298 REMARK 465 ASN A 299 REMARK 465 VAL A 300 REMARK 465 ASN A 301 REMARK 465 SER A 302 REMARK 465 LEU A 303 REMARK 465 ALA A 304 REMARK 465 LEU A 305 REMARK 465 LYS A 306 REMARK 465 ASN A 307 REMARK 465 SER A 308 REMARK 465 GLN A 309 REMARK 465 ALA A 310 REMARK 465 GLU A 311 REMARK 465 LEU A 312 REMARK 465 THR A 313 REMARK 465 SER A 314 REMARK 465 ASN A 315 REMARK 465 CYS A 316 REMARK 465 THR A 317 REMARK 465 ARG A 318 REMARK 465 THR A 319 REMARK 465 THR A 320 REMARK 465 SER A 321 REMARK 465 ALA A 322 REMARK 465 VAL A 323 REMARK 465 GLY A 324 REMARK 465 ASP A 325 REMARK 465 VAL A 326 REMARK 465 HIS A 327 REMARK 465 PRO A 328 REMARK 465 GLY A 329 REMARK 465 GLU A 330 REMARK 465 PRO A 331 REMARK 465 VAL A 332 REMARK 465 VAL A 333 REMARK 465 LYS A 334 REMARK 465 ASP A 335 REMARK 465 LYS A 336 REMARK 465 ILE A 337 REMARK 465 LYS A 338 REMARK 465 LEU A 339 REMARK 465 PRO A 340 REMARK 465 THR A 341 REMARK 465 TRP A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 119 CD2 TYR A 121 1.55 REMARK 500 OG1 THR A 119 CE2 TYR A 121 1.76 REMARK 500 O VAL B 18 OG SER A 71 2.04 REMARK 500 OG SER A 92 O SER A 99 2.08 REMARK 500 NH2 ARG B 94 OD1 ASP B 106 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 252 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 90 39.93 -94.44 REMARK 500 THR B 91 140.12 -177.71 REMARK 500 ARG B 158 -82.43 -109.63 REMARK 500 ALA A 17 -75.81 -125.65 REMARK 500 ASN A 105 -121.21 47.04 REMARK 500 LYS A 133 -94.94 -127.57 REMARK 500 HIS A 154 58.37 -103.80 REMARK 500 ASN A 160 70.63 -157.42 REMARK 500 ASP A 179 74.71 -116.88 REMARK 500 GLU A 273 -75.97 -120.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 8GP6 B 1 319 UNP P07611 G9_VACCW 1 319 DBREF 8GP6 A 1 342 UNP P16710 A16_VACCW 1 342 SEQADV 8GP6 TRP B 320 UNP P07611 EXPRESSION TAG SEQADV 8GP6 SER B 321 UNP P07611 EXPRESSION TAG SEQADV 8GP6 HIS B 322 UNP P07611 EXPRESSION TAG SEQADV 8GP6 PRO B 323 UNP P07611 EXPRESSION TAG SEQADV 8GP6 GLN B 324 UNP P07611 EXPRESSION TAG SEQADV 8GP6 PHE B 325 UNP P07611 EXPRESSION TAG SEQADV 8GP6 GLU B 326 UNP P07611 EXPRESSION TAG SEQADV 8GP6 LYS B 327 UNP P07611 EXPRESSION TAG SEQADV 8GP6 HIS A 343 UNP P16710 EXPRESSION TAG SEQADV 8GP6 HIS A 344 UNP P16710 EXPRESSION TAG SEQADV 8GP6 HIS A 345 UNP P16710 EXPRESSION TAG SEQADV 8GP6 HIS A 346 UNP P16710 EXPRESSION TAG SEQADV 8GP6 HIS A 347 UNP P16710 EXPRESSION TAG SEQADV 8GP6 HIS A 348 UNP P16710 EXPRESSION TAG SEQRES 1 B 327 MET GLY GLY GLY VAL SER VAL GLU LEU PRO LYS ARG ASP SEQRES 2 B 327 PRO PRO PRO GLY VAL PRO THR ASP GLU MET LEU LEU ASN SEQRES 3 B 327 VAL ASP LYS MET HIS ASP VAL ILE ALA PRO ALA LYS LEU SEQRES 4 B 327 LEU GLU TYR VAL HIS ILE GLY PRO LEU ALA LYS ASP LYS SEQRES 5 B 327 GLU ASP LYS VAL LYS LYS ARG TYR PRO GLU PHE ARG LEU SEQRES 6 B 327 VAL ASN THR GLY PRO GLY GLY LEU SER ALA LEU LEU ARG SEQRES 7 B 327 GLN SER TYR ASN GLY THR ALA PRO ASN CYS CYS ARG THR SEQRES 8 B 327 PHE ASN ARG THR HIS TYR TRP LYS LYS ASP GLY LYS ILE SEQRES 9 B 327 SER ASP LYS TYR GLU GLU GLY ALA VAL LEU GLU SER CYS SEQRES 10 B 327 TRP PRO ASP VAL HIS ASP THR GLY LYS CYS ASP VAL ASP SEQRES 11 B 327 LEU PHE ASP TRP CYS GLN GLY ASP THR PHE ASP ARG ASN SEQRES 12 B 327 ILE CYS HIS GLN TRP ILE GLY SER ALA PHE ASN ARG SER SEQRES 13 B 327 ASN ARG THR VAL GLU GLY GLN GLN SER LEU ILE ASN LEU SEQRES 14 B 327 TYR ASN LYS MET GLN THR LEU CYS SER LYS ASP ALA SER SEQRES 15 B 327 VAL PRO ILE CYS GLU SER PHE LEU HIS HIS LEU ARG ALA SEQRES 16 B 327 HIS ASN THR GLU ASP SER LYS GLU MET ILE ASP TYR ILE SEQRES 17 B 327 LEU ARG GLN GLN SER ALA ASP PHE LYS GLN LYS TYR MET SEQRES 18 B 327 ARG CYS SER TYR PRO THR ARG ASP LYS LEU GLU GLU SER SEQRES 19 B 327 LEU LYS TYR ALA GLU PRO ARG GLU CYS TRP ASP PRO GLU SEQRES 20 B 327 CYS SER ASN ALA ASN VAL ASN PHE LEU LEU THR ARG ASN SEQRES 21 B 327 TYR ASN ASN LEU GLY LEU CYS ASN ILE VAL ARG CYS ASN SEQRES 22 B 327 THR SER VAL ASN ASN LEU GLN MET ASP LYS THR SER SER SEQRES 23 B 327 LEU ARG LEU SER CYS GLY LEU SER ASN SER ASP ARG PHE SEQRES 24 B 327 SER THR VAL PRO VAL ASN ARG ALA LYS VAL VAL GLN HIS SEQRES 25 B 327 ASN ILE LYS HIS SER PHE ASP TRP SER HIS PRO GLN PHE SEQRES 26 B 327 GLU LYS SEQRES 1 A 348 MET GLY ALA ALA VAL THR LEU ASN ARG ILE LYS ILE ALA SEQRES 2 A 348 PRO GLY ILE ALA ASP ILE ARG ASP LYS TYR MET GLU LEU SEQRES 3 A 348 GLY PHE ASN TYR PRO GLU TYR ASN ARG ALA VAL LYS PHE SEQRES 4 A 348 ALA GLU GLU SER TYR THR TYR TYR TYR GLU THR SER PRO SEQRES 5 A 348 GLY GLU ILE LYS PRO LYS PHE CYS LEU ILE ASP GLY MET SEQRES 6 A 348 SER ILE ASP HIS CYS SER SER PHE ILE VAL PRO GLU PHE SEQRES 7 A 348 ALA LYS GLN TYR VAL LEU ILE HIS GLY GLU PRO CYS SER SEQRES 8 A 348 SER PHE LYS PHE ARG PRO GLY SER LEU ILE TYR TYR GLN SEQRES 9 A 348 ASN GLU VAL THR PRO GLU TYR ILE LYS ASP LEU LYS HIS SEQRES 10 A 348 ALA THR ASP TYR ILE ALA SER GLY GLN ARG CYS HIS PHE SEQRES 11 A 348 ILE LYS LYS ASP TYR LEU LEU GLY ASP SER ASP SER VAL SEQRES 12 A 348 ALA LYS CYS CYS SER LYS THR ASN THR LYS HIS CYS PRO SEQRES 13 A 348 LYS ILE PHE ASN ASN ASN TYR LYS THR GLU HIS CYS ASP SEQRES 14 A 348 ASP PHE MET THR GLY PHE CYS ARG ASN ASP PRO GLY ASN SEQRES 15 A 348 PRO ASN CYS LEU GLU TRP LEU ARG ALA LYS ARG LYS PRO SEQRES 16 A 348 ALA MET SER THR TYR SER ASP ILE CYS SER LYS HIS MET SEQRES 17 A 348 ASP ALA ARG TYR CYS SER GLU PHE ILE ARG ILE ILE ARG SEQRES 18 A 348 PRO ASP TYR PHE THR PHE GLY ASP THR ALA LEU TYR VAL SEQRES 19 A 348 PHE CYS ASN ASP HIS LYS GLY ASN ARG ASN CYS TRP CYS SEQRES 20 A 348 ALA ASN TYR PRO LYS SER ASN SER GLY ASP LYS TYR LEU SEQRES 21 A 348 GLY PRO ARG VAL CYS TRP LEU HIS GLU CYS THR ASP GLU SEQRES 22 A 348 SER ARG ASP ARG LYS TRP LEU TYR TYR ASN GLN ASP VAL SEQRES 23 A 348 GLN ARG THR ARG CYS LYS TYR VAL GLY CYS THR ILE ASN SEQRES 24 A 348 VAL ASN SER LEU ALA LEU LYS ASN SER GLN ALA GLU LEU SEQRES 25 A 348 THR SER ASN CYS THR ARG THR THR SER ALA VAL GLY ASP SEQRES 26 A 348 VAL HIS PRO GLY GLU PRO VAL VAL LYS ASP LYS ILE LYS SEQRES 27 A 348 LEU PRO THR TRP HIS HIS HIS HIS HIS HIS HET GOL A 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 HELIX 1 AA1 THR B 20 LEU B 25 1 6 HELIX 2 AA2 ASN B 26 LYS B 29 5 4 HELIX 3 AA3 MET B 30 ALA B 35 1 6 HELIX 4 AA4 ALA B 49 ASP B 51 5 3 HELIX 5 AA5 LYS B 52 TYR B 60 1 9 HELIX 6 AA6 THR B 84 CYS B 89 1 6 HELIX 7 AA7 ASP B 120 GLY B 125 1 6 HELIX 8 AA8 CYS B 127 GLN B 136 1 10 HELIX 9 AA9 ASP B 141 ASN B 154 1 14 HELIX 10 AB1 ARG B 155 ARG B 158 5 4 HELIX 11 AB2 THR B 159 ASP B 180 1 22 HELIX 12 AB3 VAL B 183 ASN B 197 1 15 HELIX 13 AB4 THR B 198 ARG B 210 1 13 HELIX 14 AB5 SER B 213 MET B 221 1 9 HELIX 15 AB6 THR B 227 TYR B 237 1 11 HELIX 16 AB7 PRO B 240 TRP B 244 5 5 HELIX 17 AB8 ASP B 245 ALA B 251 1 7 HELIX 18 AB9 ASN B 252 LEU B 256 5 5 HELIX 19 AC1 LEU B 257 GLY B 265 1 9 HELIX 20 AC2 TYR A 30 ASN A 34 5 5 HELIX 21 AC3 ILE A 67 SER A 72 1 6 HELIX 22 AC4 VAL A 75 LYS A 80 1 6 HELIX 23 AC5 THR A 108 THR A 119 1 12 HELIX 24 AC6 ASP A 139 LYS A 149 1 11 HELIX 25 AC7 PRO A 156 ASN A 160 5 5 HELIX 26 AC8 CYS A 168 ASP A 179 1 12 HELIX 27 AC9 ASN A 182 ARG A 190 1 9 HELIX 28 AD1 ARG A 193 MET A 208 1 16 HELIX 29 AD2 ALA A 210 ARG A 221 1 12 HELIX 30 AD3 PHE A 225 HIS A 239 1 15 HELIX 31 AD4 ASN A 242 TRP A 246 5 5 HELIX 32 AD5 LEU A 260 LEU A 267 5 8 HELIX 33 AD6 ASP A 276 LEU A 280 5 5 HELIX 34 AD7 TYR A 281 CYS A 291 1 11 SHEET 1 AA1 3 TYR B 42 PRO B 47 0 SHEET 2 AA1 3 LEU B 73 ARG B 78 -1 O LEU B 76 N VAL B 43 SHEET 3 AA1 3 PHE B 63 ASN B 67 -1 N VAL B 66 O ALA B 75 SHEET 1 AA2 3 LYS B 103 SER B 105 0 SHEET 2 AA2 3 HIS B 96 LYS B 100 -1 N TRP B 98 O SER B 105 SHEET 3 AA2 3 VAL B 113 SER B 116 -1 O VAL B 113 N LYS B 99 SHEET 1 AA3 4 ASN A 8 PRO A 14 0 SHEET 2 AA3 4 ASP A 21 GLY A 27 -1 O TYR A 23 N ALA A 13 SHEET 3 AA3 4 ARG A 35 ALA A 40 -1 O VAL A 37 N MET A 24 SHEET 4 AA3 4 LEU A 100 TYR A 102 -1 O LEU A 100 N ALA A 40 SHEET 1 AA4 3 GLU A 54 ILE A 55 0 SHEET 2 AA4 3 HIS A 129 LYS A 132 -1 O PHE A 130 N ILE A 55 SHEET 3 AA4 3 TYR A 82 ILE A 85 -1 N VAL A 83 O ILE A 131 SHEET 1 AA5 3 CYS A 60 ILE A 62 0 SHEET 2 AA5 3 ALA A 123 ARG A 127 -1 O GLN A 126 N LEU A 61 SHEET 3 AA5 3 PRO A 89 SER A 92 -1 N SER A 92 O ALA A 123 SSBOND 1 CYS B 88 CYS B 117 1555 1555 2.06 SSBOND 2 CYS B 89 CYS B 127 1555 1555 2.06 SSBOND 3 CYS B 135 CYS B 145 1555 1555 2.03 SSBOND 4 CYS B 177 CYS B 186 1555 1555 2.05 SSBOND 5 CYS B 223 CYS B 248 1555 1555 2.03 SSBOND 6 CYS B 243 CYS B 267 1555 1555 2.05 SSBOND 7 CYS A 60 CYS A 90 1555 1555 2.09 SSBOND 8 CYS A 70 CYS A 128 1555 1555 2.07 SSBOND 9 CYS A 146 CYS A 155 1555 1555 2.04 SSBOND 10 CYS A 147 CYS A 168 1555 1555 2.05 SSBOND 11 CYS A 176 CYS A 185 1555 1555 2.05 SSBOND 12 CYS A 204 CYS A 213 1555 1555 2.02 SSBOND 13 CYS A 236 CYS A 245 1555 1555 2.08 SSBOND 14 CYS A 247 CYS A 270 1555 1555 2.04 SSBOND 15 CYS A 265 CYS A 291 1555 1555 2.03 CISPEP 1 ARG A 221 PRO A 222 0 3.60 CRYST1 41.275 122.008 123.909 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024228 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008070 0.00000