HEADER VIRAL PROTEIN 30-AUG-22 8GQO TITLE SOLUTION NMR STRUCTURE OF VACCINIA VIRUS PROTEIN A28: AN ENTRY-FUSION TITLE 2 COMPLEX COMPONENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN A28; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMV MP/VIRUS ENTRY PROTEIN,IMV MEMBRANE PROTEIN,INTEGRAL COMPND 5 COMPONENT OF THE VIRUS ENTRY-FUSION COMPLEX,INTEGRAL COMPONENT OF THE COMPND 6 VIRUS ENTRY/FUSION COMPLEX,INTEGRAL COMPONENT OF VIRUS ENTRY/FUSION COMPND 7 COMPLEX PROTEIN,PUTATIVE SIGNAL PEPTIDE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS (STRAIN WESTERN RESERVE); SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 STRAIN: WR (WESTERN RESERVE); SOURCE 6 GENE: A28L, VACV_BRZ_SERRO2_149, VACV_CTGV_ALEH2_151, SOURCE 7 VACV_CTGV_CG04_151, VACV_CTGV_MI233-151, VACV_CTGV_VI04_151, SOURCE 8 44/47.1_RMVA_142, 51.1RMVA_164, 51.2RMVA_149, IKMOJFFE_00136, SOURCE 9 LIST144, LIVPCLONE14_158, VAC_IHDW1_152, VAC_TKT3_141, VAC_TKT4_141, SOURCE 10 VACV_CTGV_CM01_151, VACV_IOC_B141_176, VV.00G001400; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET-21A(+) KEYWDS ENTRY-FUSION COMPLEX, CELL MEMBRANE FUSION, VACCINIA VIRUS, VIRAL KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.H.TSAI,D.N.WU,D.L.M.TZOU REVDAT 5 13-NOV-24 8GQO 1 REMARK REVDAT 4 14-FEB-24 8GQO 1 SOURCE REVDAT 3 22-NOV-23 8GQO 1 JRNL REVDAT 2 20-SEP-23 8GQO 1 TITLE JRNL REVDAT 1 06-SEP-23 8GQO 0 JRNL AUTH C.F.KAO,M.H.TSAI,K.J.CARILLO,D.L.TZOU,W.CHANG JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF VACCINIA VIRAL FUSION JRNL TITL 2 COMPLEX COMPONENT PROTEIN A28 THROUGH NMR AND MOLECULAR JRNL TITL 3 DYNAMIC SIMULATIONS. JRNL REF PLOS PATHOG. V. 19 11500 2023 JRNL REFN ESSN 1553-7374 JRNL PMID 37948471 JRNL DOI 10.1371/JOURNAL.PPAT.1011500 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300030242. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM CHLORIDE, 50 MM REMARK 210 MES, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HCCH-TOCSY; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 3.4, NMRVIEWJ 9.2.0 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 ILE A -3 REMARK 465 GLU A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 6 -4.78 -150.97 REMARK 500 1 GLU A 7 -66.59 59.37 REMARK 500 1 LEU A 18 -35.69 -138.59 REMARK 500 1 VAL A 25 -41.48 -135.16 REMARK 500 1 ASN A 26 -50.68 -151.92 REMARK 500 1 ASP A 27 -48.46 56.03 REMARK 500 1 THR A 28 10.85 -154.46 REMARK 500 1 TRP A 36 135.84 71.58 REMARK 500 1 SER A 81 44.53 -84.89 REMARK 500 1 ASN A 85 80.35 53.97 REMARK 500 1 CYS A 92 79.18 49.72 REMARK 500 2 ALA A 5 30.52 -78.92 REMARK 500 2 PHE A 6 23.26 -145.20 REMARK 500 2 GLU A 7 -138.69 56.87 REMARK 500 2 LYS A 10 -110.78 48.83 REMARK 500 2 ILE A 12 18.69 -144.89 REMARK 500 2 ALA A 17 -14.71 -148.79 REMARK 500 2 ARG A 20 -27.69 59.52 REMARK 500 2 VAL A 22 153.83 -49.60 REMARK 500 2 SER A 30 -3.51 -151.19 REMARK 500 2 TRP A 36 159.30 57.86 REMARK 500 2 ASN A 85 56.37 -149.15 REMARK 500 2 ASN A 96 96.25 -69.07 REMARK 500 3 PHE A 6 31.91 -144.25 REMARK 500 3 GLU A 7 -152.37 49.08 REMARK 500 3 ALA A 17 -156.33 -148.71 REMARK 500 3 ASN A 26 41.21 -92.62 REMARK 500 3 TRP A 36 167.37 60.87 REMARK 500 3 SER A 81 30.94 -97.61 REMARK 500 3 ASN A 85 108.31 69.92 REMARK 500 3 CYS A 92 74.61 58.38 REMARK 500 4 PHE A 6 13.97 -148.66 REMARK 500 4 SER A 9 -100.05 48.04 REMARK 500 4 ARG A 21 172.67 52.59 REMARK 500 4 ASN A 26 -121.88 -136.74 REMARK 500 4 ASP A 27 -46.64 56.36 REMARK 500 4 SER A 30 -30.79 -167.41 REMARK 500 4 TRP A 36 148.33 64.60 REMARK 500 4 SER A 81 43.74 -76.80 REMARK 500 4 ASN A 85 74.81 53.95 REMARK 500 4 CYS A 92 19.96 57.58 REMARK 500 5 PHE A 6 -2.04 -161.08 REMARK 500 5 ASP A 19 134.66 73.81 REMARK 500 5 THR A 28 -11.08 -146.14 REMARK 500 5 SER A 30 42.88 -150.99 REMARK 500 5 TRP A 36 155.97 61.51 REMARK 500 5 ASN A 61 50.59 39.58 REMARK 500 5 SER A 81 44.33 -75.01 REMARK 500 5 ASN A 85 83.91 52.59 REMARK 500 6 HIS A 3 -12.73 -150.04 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 96 ILE A 97 4 142.74 REMARK 500 PHE A 6 GLU A 7 5 -148.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50469 RELATED DB: BMRB DBREF 8GQO A 1 109 UNP A4GDK2 A4GDK2_9POXV 38 146 SEQADV 8GQO MET A -12 UNP A4GDK2 INITIATING METHIONINE SEQADV 8GQO HIS A -11 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO HIS A -10 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO HIS A -9 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO HIS A -8 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO HIS A -7 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO HIS A -6 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO SER A -5 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO GLY A -4 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO ILE A -3 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO GLU A -2 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO GLY A -1 UNP A4GDK2 EXPRESSION TAG SEQADV 8GQO ARG A 0 UNP A4GDK2 EXPRESSION TAG SEQRES 1 A 122 MET HIS HIS HIS HIS HIS HIS SER GLY ILE GLU GLY ARG SEQRES 2 A 122 ALA THR HIS ALA ALA PHE GLU TYR SER LYS SER ILE GLY SEQRES 3 A 122 GLY THR PRO ALA LEU ASP ARG ARG VAL GLN ASP VAL ASN SEQRES 4 A 122 ASP THR ILE SER ASP VAL LYS GLN LYS TRP ARG CYS VAL SEQRES 5 A 122 VAL TYR PRO GLY ASN GLY PHE VAL SER ALA SER ILE PHE SEQRES 6 A 122 GLY PHE GLN ALA GLU VAL GLY PRO ASN ASN THR ARG SER SEQRES 7 A 122 ILE ARG LYS PHE ASN THR MET GLN GLN CYS ILE ASP PHE SEQRES 8 A 122 THR PHE SER ASP VAL ILE ASN ILE ASN ILE TYR ASN PRO SEQRES 9 A 122 CYS VAL VAL PRO ASN ILE ASN ASN ALA GLU CYS GLN PHE SEQRES 10 A 122 LEU LYS SER VAL LEU HELIX 1 AA1 SER A 30 LYS A 35 1 6 HELIX 2 AA2 THR A 71 SER A 81 1 11 HELIX 3 AA3 ASP A 82 ASN A 85 5 4 HELIX 4 AA4 ASN A 98 LEU A 109 1 12 SHEET 1 AA1 4 ARG A 37 TYR A 41 0 SHEET 2 AA1 4 GLY A 45 SER A 50 -1 O ALA A 49 N ARG A 37 SHEET 3 AA1 4 GLY A 53 GLY A 59 -1 O GLN A 55 N SER A 48 SHEET 4 AA1 4 LYS A 68 PHE A 69 0 SHEET 1 AA2 4 THR A 63 ILE A 66 0 SHEET 2 AA2 4 GLY A 53 GLY A 59 -1 N GLU A 57 O SER A 65 SHEET 3 AA2 4 GLY A 45 SER A 50 -1 N SER A 48 O GLN A 55 SHEET 4 AA2 4 ILE A 88 TYR A 89 0 SSBOND 1 CYS A 38 CYS A 75 1555 1555 2.04 SSBOND 2 CYS A 92 CYS A 102 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL CONECT 586 1145 CONECT 1145 586 CONECT 1413 1555 CONECT 1555 1413 MASTER 176 0 0 4 8 0 0 6 855 1 4 10 END