HEADER HYDROLASE 01-SEP-22 8GR6 TITLE CRYSTAL STRUCTURE OF PILUS-SPECIFIC SORTASE C FROM STREPTOCOCCUS TITLE 2 SANGUINIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTASE-LIKE PROTEIN, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SANGUINIS SK36; SOURCE 3 ORGANISM_TAXID: 388919; SOURCE 4 STRAIN: SK36; SOURCE 5 VARIANT: NO; SOURCE 6 ATCC: BAA-1455D; SOURCE 7 GENE: SRTC, SSA_1631; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL EXPRESSION VECTOR; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SORTASE C, PILUS SPECIFIC SORTASE, HYDROLASE, CYSTEINE- KEYWDS 2 TRANSPEPTIDASE, STREPTOCOCCUS SANGUINIS, DENTAL PLAQUE, BIOFILM EXPDTA X-RAY DIFFRACTION AUTHOR S.YADAV,P.PARIJAT,V.KRISHNAN REVDAT 3 29-NOV-23 8GR6 1 REMARK REVDAT 2 28-JUN-23 8GR6 1 JRNL REVDAT 1 21-JUN-23 8GR6 0 JRNL AUTH S.YADAV,P.PARIJAT,V.KRISHNAN JRNL TITL CRYSTAL STRUCTURE OF THE PILUS-SPECIFIC SORTASE FROM EARLY JRNL TITL 2 COLONIZING ORAL STREPTOCOCCUS SANGUINIS CAPTURES AN ACTIVE JRNL TITL 3 OPEN-LID CONFORMATION. JRNL REF INT.J.BIOL.MACROMOL. V. 243 25183 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 37276901 JRNL DOI 10.1016/J.IJBIOMAC.2023.125183 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 22519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 3.83000 REMARK 3 B12 (A**2) : -0.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1621 ; 0.011 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 1520 ; 0.001 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2209 ; 1.438 ; 1.875 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3520 ; 1.069 ; 2.697 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 209 ; 6.801 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;35.594 ;23.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;13.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1881 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 340 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 821 ; 2.608 ; 3.055 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 820 ; 2.600 ; 3.051 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1035 ; 3.605 ; 4.566 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1036 ; 3.604 ; 4.570 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 800 ; 4.226 ; 3.517 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 801 ; 4.224 ; 3.517 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1175 ; 5.735 ; 5.095 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1746 ; 8.132 ;37.811 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1731 ; 8.131 ;37.459 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 2201 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6940 -15.9990 -16.5970 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1065 REMARK 3 T33: 0.1314 T12: 0.0687 REMARK 3 T13: 0.0120 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 4.6696 L22: 2.1863 REMARK 3 L33: 3.2975 L12: -0.7230 REMARK 3 L13: -0.9042 L23: 0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: 0.5090 S13: 0.0076 REMARK 3 S21: -0.3121 S22: -0.0435 S23: 0.1231 REMARK 3 S31: 0.1757 S32: -0.0033 S33: -0.0836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 8GR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300031864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.965459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.056 REMARK 200 RESOLUTION RANGE LOW (A) : 52.331 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4D7W REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE (PH 5.5), 200MM REMARK 280 AMMONIUM-SULPHATE AND 10% (W/V) PEG 2000 MME AND 12.5 MM ZINC- REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 70.00950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.42000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.54167 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 70.00950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.42000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.54167 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 70.00950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.42000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.54167 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 70.00950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.42000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.54167 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 70.00950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.42000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.54167 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 70.00950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.42000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.54167 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.84001 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.08333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 80.84001 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 69.08333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 80.84001 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 69.08333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 80.84001 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.08333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 80.84001 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 69.08333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 80.84001 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 69.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2266 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2275 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 VAL A 28 REMARK 465 PRO A 29 REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 SER A 32 REMARK 465 ASN A 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 91 69.53 -106.40 REMARK 500 ALA A 99 -177.44 -178.14 REMARK 500 ASP A 118 -57.00 71.34 REMARK 500 PHE A 156 19.25 56.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 65 O REMARK 620 2 SER A 132 OG 139.0 REMARK 620 3 GLY A 139 O 115.0 106.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 69 O REMARK 620 2 HOH A2206 O 78.0 REMARK 620 3 HOH A2233 O 125.0 112.1 REMARK 620 4 HOH A2236 O 112.9 129.7 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 188 OE2 REMARK 620 2 MHS A 217 NE2 99.3 REMARK 620 N 1 DBREF 8GR6 A 35 231 UNP A3CPB4 A3CPB4_STRSV 35 231 SEQADV 8GR6 MET A 14 UNP A3CPB4 INITIATING METHIONINE SEQADV 8GR6 GLY A 15 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 SER A 16 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 SER A 17 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 HIS A 18 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 HIS A 19 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 HIS A 20 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 HIS A 21 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 HIS A 22 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 HIS A 23 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 SER A 24 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 SER A 25 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 GLY A 26 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 LEU A 27 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 VAL A 28 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 PRO A 29 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 ARG A 30 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 GLY A 31 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 SER A 32 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 HIS A 33 UNP A3CPB4 EXPRESSION TAG SEQADV 8GR6 MET A 34 UNP A3CPB4 EXPRESSION TAG SEQRES 1 A 218 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 218 LEU VAL PRO ARG GLY SER HIS MET GLN SER GLN ALA ILE SEQRES 3 A 218 SER ASN TYR GLU ASN LYS VAL GLU LYS LEU ASP THR SER SEQRES 4 A 218 LYS ALA ASP GLU MET ARG ALA ALA ALA GLU VAL TYR ASN SEQRES 5 A 218 GLN THR LEU GLU LYS GLY VAL VAL PRO ASN TYR ARG LEU SEQRES 6 A 218 SER GLU GLU GLU LYS ARG THR TYR ASN SER LEU LEU ASP SEQRES 7 A 218 VAL THR GLY THR GLY ILE MET ALA TYR VAL GLU ILE PRO SEQRES 8 A 218 LYS LEU GLY THR ASN LEU PRO ILE TYR HIS GLY THR ASP SEQRES 9 A 218 ASP ALA ILE LEU GLN VAL ALA ILE GLY HIS ILE PRO GLY SEQRES 10 A 218 SER SER LEU PRO VAL GLY GLY GLN GLY THR HIS SER VAL SEQRES 11 A 218 ILE SER GLY HIS ARG GLY LEU PRO SER ALA LYS LEU PHE SEQRES 12 A 218 THR ASP ILE ASP LYS LEU LYS ASN GLY ASP ARG PHE MET SEQRES 13 A 218 ILE HIS VAL LEU GLY LYS THR ILE THR TYR GLN VAL ASP SEQRES 14 A 218 GLN THR LEU THR VAL GLU PRO GLU ASP ILE SER SER LEU SEQRES 15 A 218 ALA ILE ASP PRO ASP GLN ASP TYR CYS THR LEU VAL THR SEQRES 16 A 218 CYS THR PRO TYR GLY ILE ASN SER MHS ARG LEU LEU VAL SEQRES 17 A 218 ARG GLY HIS ARG VAL PRO ASN GLU LYS ASN MODRES 8GR6 MHS A 217 HIS MODIFIED RESIDUE HET MHS A 217 11 HET EDO A2101 4 HET ZN A2102 1 HET NA A2103 1 HET NA A2104 1 HETNAM MHS N1-METHYLATED HISTIDINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MHS C7 H11 N3 O2 FORMUL 2 EDO C2 H6 O2 FORMUL 3 ZN ZN 2+ FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *76(H2 O) HELIX 1 AA1 HIS A 33 LEU A 49 1 17 HELIX 2 AA2 ASP A 50 LEU A 68 1 19 HELIX 3 AA3 SER A 79 LEU A 89 1 11 HELIX 4 AA4 PRO A 104 GLY A 107 5 4 HELIX 5 AA5 ALA A 119 VAL A 123 5 5 HELIX 6 AA6 LEU A 150 LYS A 154 5 5 HELIX 7 AA7 ASP A 158 LEU A 162 5 5 HELIX 8 AA8 ILE A 192 ALA A 196 5 5 SHEET 1 AA1 9 ILE A 97 ILE A 103 0 SHEET 2 AA1 9 THR A 108 TYR A 113 -1 O ILE A 112 N ALA A 99 SHEET 3 AA1 9 ILE A 125 HIS A 127 1 O ILE A 125 N TYR A 113 SHEET 4 AA1 9 THR A 140 SER A 145 -1 O SER A 145 N GLY A 126 SHEET 5 AA1 9 ASP A 202 TYR A 212 1 O THR A 205 N SER A 142 SHEET 6 AA1 9 ASN A 215 VAL A 226 -1 O VAL A 221 N LEU A 206 SHEET 7 AA1 9 LYS A 175 VAL A 187 -1 N VAL A 187 O ARG A 218 SHEET 8 AA1 9 ARG A 167 VAL A 172 -1 N PHE A 168 O TYR A 179 SHEET 9 AA1 9 ILE A 97 ILE A 103 -1 N TYR A 100 O HIS A 171 LINK C SER A 216 N MHS A 217 1555 1555 1.32 LINK C MHS A 217 N ARG A 218 1555 1555 1.33 LINK O ASN A 65 NA NA A2104 1555 1555 2.75 LINK O GLU A 69 NA NA A2103 1555 1555 2.72 LINK OG SER A 132 NA NA A2104 1555 1555 2.86 LINK O GLY A 139 NA NA A2104 1555 1555 2.74 LINK OE2BGLU A 188 ZN ZN A2102 1555 1555 2.00 LINK NE2 MHS A 217 ZN ZN A2102 1555 1555 2.09 LINK NA NA A2103 O HOH A2206 1555 1555 2.86 LINK NA NA A2103 O HOH A2233 1555 1555 2.78 LINK NA NA A2103 O HOH A2236 1555 1555 2.63 CRYST1 140.019 140.019 103.625 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007142 0.004123 0.000000 0.00000 SCALE2 0.000000 0.008247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009650 0.00000