HEADER TRANSPORT PROTEIN 08-SEP-22 8GTU TITLE CRYSTAL STRUCTURE OF PUTATIVE AMINO ACID BINDING PERIPLASMIC ABC TITLE 2 TRANSPORTER PROTEIN FROM CANDIDATUS LIBERIBACTER ASIATICUS IN COMPLEX TITLE 3 WITH CLIDINIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINO ACID-BINDING PERIPLASMIC ABC TRANSPORTER COMPND 3 PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIBERIBACTER ASIATICUS (STRAIN PSY62); SOURCE 3 ORGANISM_TAXID: 537021; SOURCE 4 STRAIN: PSY62; SOURCE 5 GENE: CLIBASIA_05070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINO ACID BINDING RECEPTORS, PERIPLASMIC AMINO ACID BINDING PROTEIN, KEYWDS 2 CANDIDATUS LIBERIBACTER ASIATICUS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LONARE,M.SHARMA,A.K.SHARMA REVDAT 1 26-JUL-23 8GTU 0 JRNL AUTH S.LONARE,M.SHARMA,V.DALAL,M.GUBYAD,P.KUMAR,D.NATH GUPTA, JRNL AUTH 2 A.PAREEK,S.TOMAR,D.KUMAR GHOSH,P.KUMAR,A.KUMAR SHARMA JRNL TITL IDENTIFICATION AND EVALUATION OF POTENTIAL INHIBITOR JRNL TITL 2 MOLECULES AGAINST TCYA FROM CANDIDATUS LIBERIBACTER JRNL TITL 3 ASIATICUS. JRNL REF J.STRUCT.BIOL. V. 215 07992 2023 JRNL REFN ESSN 1095-8657 JRNL PMID 37394197 JRNL DOI 10.1016/J.JSB.2023.107992 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -2.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.497 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4114 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5596 ; 1.623 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 6.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 37 ;17.369 ; 5.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;18.363 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3126 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5999 -17.7075 -13.3984 REMARK 3 T TENSOR REMARK 3 T11: 0.0169 T22: 0.0173 REMARK 3 T33: 0.1055 T12: 0.0157 REMARK 3 T13: 0.0185 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 1.6800 L22: 2.5123 REMARK 3 L33: 2.5770 L12: 0.7521 REMARK 3 L13: 0.7713 L23: 0.6278 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0326 S13: -0.0993 REMARK 3 S21: 0.0088 S22: -0.0432 S23: -0.0575 REMARK 3 S31: 0.0514 S32: 0.0250 S33: 0.0512 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0542 -21.2860 -44.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.0513 REMARK 3 T33: 0.1062 T12: -0.0188 REMARK 3 T13: 0.0152 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.6301 L22: 1.4663 REMARK 3 L33: 2.0555 L12: -0.4064 REMARK 3 L13: 0.4899 L23: -0.1747 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.1268 S13: 0.1167 REMARK 3 S21: 0.0979 S22: -0.0669 S23: -0.0060 REMARK 3 S31: -0.1260 S32: -0.0144 S33: 0.0759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8GTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300032110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6A80 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES BUFFER, 2.5M AMMONIUM REMARK 280 SULFATE, PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.65500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.65500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ARG A 3 REMARK 465 THR A 4 REMARK 465 GLU A 5 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 ARG B 3 REMARK 465 THR B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 6 REMARK 465 GLN B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ ARG B 155 O HOH B 402 2.03 REMARK 500 C14 KG2 B 301 O HOH B 415 2.07 REMARK 500 OD2 ASP B 176 O HOH B 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 50 C - N - CA ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG A 129 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 129 CB - CG - CD ANGL. DEV. = 16.4 DEGREES REMARK 500 HIS A 142 CB - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 ARG B 129 CB - CG - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 7 44.78 -153.88 REMARK 500 SER A 8 142.85 168.97 REMARK 500 ASN A 68 27.36 82.51 REMARK 500 SER A 235 -167.59 -113.47 REMARK 500 ASN B 178 3.17 -68.12 REMARK 500 SER B 235 -167.55 -114.59 REMARK 500 SER B 240 -168.50 -128.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 8GTU A 2 241 UNP C6XGT2 C6XGT2_LIBAP 35 274 DBREF 8GTU B 2 241 UNP C6XGT2 C6XGT2_LIBAP 35 274 SEQADV 8GTU MET A 1 UNP C6XGT2 INITIATING METHIONINE SEQADV 8GTU MET B 1 UNP C6XGT2 INITIATING METHIONINE SEQRES 1 A 241 MET PHE ARG THR GLU ASP GLN SER ALA LEU ARG VAL GLY SEQRES 2 A 241 THR ASP GLY ILE TYR PRO PRO HIS SER PHE HIS ALA GLN SEQRES 3 A 241 ASP GLY ARG GLY GLU LEU THR GLY PHE ASP ILE ASP LEU SEQRES 4 A 241 ILE LYS GLU VAL ALA HIS ARG LEU ASN LEU LYS VAL GLU SEQRES 5 A 241 PHE PHE GLU THR ALA VAL SER GLY LEU ILE THR GLY LEU SEQRES 6 A 241 ASP THR ASN ARG TYR ASP VAL LEU VAL ASN VAL ALA ILE SEQRES 7 A 241 THR PRO GLU ARG GLN LYS LYS TYR ASP PHE SER ILE PRO SEQRES 8 A 241 TYR ILE ALA HIS ARG VAL LEU LEU VAL VAL ARG SER ASP SEQRES 9 A 241 GLN GLN ASP ILE ARG SER PHE LYS ASP LEU THR ASP LYS SEQRES 10 A 241 THR VAL ALA GLN ILE LEU GLY THR ASP LEU SER ARG PHE SEQRES 11 A 241 ALA LYS GLU LEU LYS SER HIS LEU VAL PHE SER HIS ASN SEQRES 12 A 241 PHE GLU GLN SER LEU GLN LEU LEU LEU SER LYS ARG THR SEQRES 13 A 241 ASP ALA THR MET ILE PRO ASP ILE PRO PHE PHE ASN PHE SEQRES 14 A 241 LEU GLU ARG ARG PRO HIS ASP GLY ASN LEU PHE LYS ILE SEQRES 15 A 241 ALA ASP ARG MET LYS ASP ASN SER ALA VAL ALA PHE MET SEQRES 16 A 241 MET ARG LYS GLY ASN ASN LYS LEU THR ARG SER ILE ASN SEQRES 17 A 241 GLU ILE LEU CYS ALA ILE HIS LEU ASP GLY THR TYR LYS SEQRES 18 A 241 LYS ILE PHE ASP ARG TYR PHE ASP LYS ASN ILE ILE SER SEQRES 19 A 241 SER VAL PRO GLY CYS SER SER SEQRES 1 B 241 MET PHE ARG THR GLU ASP GLN SER ALA LEU ARG VAL GLY SEQRES 2 B 241 THR ASP GLY ILE TYR PRO PRO HIS SER PHE HIS ALA GLN SEQRES 3 B 241 ASP GLY ARG GLY GLU LEU THR GLY PHE ASP ILE ASP LEU SEQRES 4 B 241 ILE LYS GLU VAL ALA HIS ARG LEU ASN LEU LYS VAL GLU SEQRES 5 B 241 PHE PHE GLU THR ALA VAL SER GLY LEU ILE THR GLY LEU SEQRES 6 B 241 ASP THR ASN ARG TYR ASP VAL LEU VAL ASN VAL ALA ILE SEQRES 7 B 241 THR PRO GLU ARG GLN LYS LYS TYR ASP PHE SER ILE PRO SEQRES 8 B 241 TYR ILE ALA HIS ARG VAL LEU LEU VAL VAL ARG SER ASP SEQRES 9 B 241 GLN GLN ASP ILE ARG SER PHE LYS ASP LEU THR ASP LYS SEQRES 10 B 241 THR VAL ALA GLN ILE LEU GLY THR ASP LEU SER ARG PHE SEQRES 11 B 241 ALA LYS GLU LEU LYS SER HIS LEU VAL PHE SER HIS ASN SEQRES 12 B 241 PHE GLU GLN SER LEU GLN LEU LEU LEU SER LYS ARG THR SEQRES 13 B 241 ASP ALA THR MET ILE PRO ASP ILE PRO PHE PHE ASN PHE SEQRES 14 B 241 LEU GLU ARG ARG PRO HIS ASP GLY ASN LEU PHE LYS ILE SEQRES 15 B 241 ALA ASP ARG MET LYS ASP ASN SER ALA VAL ALA PHE MET SEQRES 16 B 241 MET ARG LYS GLY ASN ASN LYS LEU THR ARG SER ILE ASN SEQRES 17 B 241 GLU ILE LEU CYS ALA ILE HIS LEU ASP GLY THR TYR LYS SEQRES 18 B 241 LYS ILE PHE ASP ARG TYR PHE ASP LYS ASN ILE ILE SER SEQRES 19 B 241 SER VAL PRO GLY CYS SER SER HET KG2 A 301 26 HET KG2 B 301 26 HETNAM KG2 [(3~{S})-1-METHYL-1-AZONIABICYCLO[2.2.2]OCTAN-3-YL] 2- HETNAM 2 KG2 OXIDANYL-2,2-DIPHENYL-ETHANOATE FORMUL 3 KG2 2(C22 H26 N O3 1+) FORMUL 5 HOH *97(H2 O) HELIX 1 AA1 ALA A 25 ARG A 29 1 5 HELIX 2 AA2 GLY A 34 LEU A 47 1 14 HELIX 3 AA3 ALA A 57 SER A 59 5 3 HELIX 4 AA4 GLY A 60 THR A 67 1 8 HELIX 5 AA5 THR A 79 LYS A 85 1 7 HELIX 6 AA6 SER A 110 THR A 115 5 6 HELIX 7 AA7 THR A 125 LEU A 134 1 10 HELIX 8 AA8 ASN A 143 SER A 153 1 11 HELIX 9 AA9 ASP A 163 ARG A 173 1 11 HELIX 10 AB1 PRO A 174 ASN A 178 5 5 HELIX 11 AB2 ASN A 200 ASP A 217 1 18 HELIX 12 AB3 GLY A 218 PHE A 228 1 11 HELIX 13 AB4 ALA B 25 ARG B 29 1 5 HELIX 14 AB5 GLY B 34 LEU B 47 1 14 HELIX 15 AB6 ALA B 57 SER B 59 5 3 HELIX 16 AB7 GLY B 60 ASN B 68 1 9 HELIX 17 AB8 THR B 79 LYS B 85 1 7 HELIX 18 AB9 SER B 110 THR B 115 5 6 HELIX 19 AC1 THR B 125 LYS B 135 1 11 HELIX 20 AC2 ASN B 143 SER B 153 1 11 HELIX 21 AC3 ASP B 163 ARG B 173 1 11 HELIX 22 AC4 PRO B 174 GLY B 177 5 4 HELIX 23 AC5 ASN B 200 ASP B 217 1 18 HELIX 24 AC6 GLY B 218 ARG B 226 1 9 SHEET 1 AA1 5 LYS A 50 GLU A 55 0 SHEET 2 AA1 5 ALA A 9 THR A 14 1 N VAL A 12 O GLU A 52 SHEET 3 AA1 5 VAL A 72 ALA A 77 1 O VAL A 72 N GLY A 13 SHEET 4 AA1 5 SER A 190 ARG A 197 -1 O MET A 195 N LEU A 73 SHEET 5 AA1 5 TYR A 86 PHE A 88 -1 N ASP A 87 O MET A 196 SHEET 1 AA2 5 LYS A 50 GLU A 55 0 SHEET 2 AA2 5 ALA A 9 THR A 14 1 N VAL A 12 O GLU A 52 SHEET 3 AA2 5 VAL A 72 ALA A 77 1 O VAL A 72 N GLY A 13 SHEET 4 AA2 5 SER A 190 ARG A 197 -1 O MET A 195 N LEU A 73 SHEET 5 AA2 5 ILE A 93 HIS A 95 -1 N HIS A 95 O SER A 190 SHEET 1 AA3 3 ILE A 17 TYR A 18 0 SHEET 2 AA3 3 SER A 22 HIS A 24 -1 O SER A 22 N TYR A 18 SHEET 3 AA3 3 LEU A 32 THR A 33 -1 O THR A 33 N PHE A 23 SHEET 1 AA4 3 THR A 159 PRO A 162 0 SHEET 2 AA4 3 VAL A 97 ARG A 102 -1 N VAL A 100 O THR A 159 SHEET 3 AA4 3 PHE A 180 ARG A 185 -1 O ASP A 184 N LEU A 99 SHEET 1 AA5 2 THR A 118 GLN A 121 0 SHEET 2 AA5 2 HIS A 137 PHE A 140 1 O VAL A 139 N VAL A 119 SHEET 1 AA6 5 LYS B 50 GLU B 55 0 SHEET 2 AA6 5 ALA B 9 THR B 14 1 N VAL B 12 O GLU B 52 SHEET 3 AA6 5 VAL B 72 ALA B 77 1 O VAL B 72 N GLY B 13 SHEET 4 AA6 5 SER B 190 ARG B 197 -1 O ALA B 193 N VAL B 76 SHEET 5 AA6 5 TYR B 86 PHE B 88 -1 N ASP B 87 O MET B 196 SHEET 1 AA7 5 LYS B 50 GLU B 55 0 SHEET 2 AA7 5 ALA B 9 THR B 14 1 N VAL B 12 O GLU B 52 SHEET 3 AA7 5 VAL B 72 ALA B 77 1 O VAL B 72 N GLY B 13 SHEET 4 AA7 5 SER B 190 ARG B 197 -1 O ALA B 193 N VAL B 76 SHEET 5 AA7 5 ILE B 93 HIS B 95 -1 N HIS B 95 O SER B 190 SHEET 1 AA8 3 ILE B 17 TYR B 18 0 SHEET 2 AA8 3 SER B 22 HIS B 24 -1 O SER B 22 N TYR B 18 SHEET 3 AA8 3 LEU B 32 THR B 33 -1 O THR B 33 N PHE B 23 SHEET 1 AA9 3 THR B 159 PRO B 162 0 SHEET 2 AA9 3 VAL B 97 ARG B 102 -1 N VAL B 100 O THR B 159 SHEET 3 AA9 3 PHE B 180 ARG B 185 -1 O ASP B 184 N LEU B 99 SHEET 1 AB1 2 THR B 118 ILE B 122 0 SHEET 2 AB1 2 HIS B 137 SER B 141 1 O VAL B 139 N VAL B 119 SSBOND 1 CYS A 212 CYS A 239 1555 1555 2.07 SSBOND 2 CYS B 212 CYS B 239 1555 1555 2.06 CISPEP 1 PRO A 19 PRO A 20 0 0.67 CISPEP 2 PRO B 19 PRO B 20 0 -0.66 CRYST1 45.600 87.440 123.310 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008110 0.00000