HEADER VIRAL PROTEIN/INHIBITOR 08-SEP-22 8GTW TITLE SARS-COV-2 3CL PROTEASE (3CLPRO) IN COMPLEX WITH COMPOUND JZD-26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAIN PROTEASE; COMPND 5 EC: 3.4.22.69; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MPRO, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.X.SU,T.Q.NIE,H.XIE,M.J.LI,Y.C.XU REVDAT 1 13-SEP-23 8GTW 0 JRNL AUTH Y.C.XU,Y.ZANG,Y.ZHOU JRNL TITL DEVELOPMENT OF NOVEL INHIBITORS AGAINST SARS-COV-2 3CLPRO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5600 - 5.1700 0.97 2733 125 0.1687 0.1952 REMARK 3 2 5.1600 - 4.1000 1.00 2780 133 0.1616 0.1788 REMARK 3 3 4.1000 - 3.5900 1.00 2720 151 0.1778 0.1984 REMARK 3 4 3.5800 - 3.2600 1.00 2739 138 0.2040 0.2303 REMARK 3 5 3.2600 - 3.0200 1.00 2707 146 0.2125 0.2239 REMARK 3 6 3.0200 - 2.8500 1.00 2734 157 0.2075 0.2698 REMARK 3 7 2.8500 - 2.7000 1.00 2728 122 0.2142 0.2346 REMARK 3 8 2.7000 - 2.5900 1.00 2715 165 0.2047 0.2481 REMARK 3 9 2.5900 - 2.4900 1.00 2702 156 0.2014 0.2867 REMARK 3 10 2.4900 - 2.4000 1.00 2731 146 0.2152 0.2343 REMARK 3 11 2.4000 - 2.3300 1.00 2701 153 0.2131 0.2582 REMARK 3 12 2.3300 - 2.2600 1.00 2715 125 0.2127 0.2581 REMARK 3 13 2.2600 - 2.2000 1.00 2714 139 0.2177 0.2351 REMARK 3 14 2.2000 - 2.1500 1.00 2715 145 0.2161 0.2086 REMARK 3 15 2.1500 - 2.1000 1.00 2723 150 0.2182 0.2532 REMARK 3 16 2.1000 - 2.0500 1.00 2692 140 0.2283 0.2572 REMARK 3 17 2.0500 - 2.0100 1.00 2720 139 0.2428 0.2646 REMARK 3 18 2.0100 - 1.9700 1.00 2700 128 0.2475 0.3008 REMARK 3 19 1.9700 - 1.9400 1.00 2706 150 0.2468 0.3104 REMARK 3 20 1.9400 - 1.9100 1.00 2677 144 0.2598 0.2996 REMARK 3 21 1.9100 - 1.8700 1.00 2758 139 0.2676 0.2693 REMARK 3 22 1.8700 - 1.8500 0.96 2568 139 0.2820 0.3395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0453 25.3009 29.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.2209 REMARK 3 T33: 0.3267 T12: -0.0084 REMARK 3 T13: -0.0221 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 2.9325 L22: 1.4764 REMARK 3 L33: 1.6641 L12: -0.4099 REMARK 3 L13: -0.8209 L23: 0.5388 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: -0.3341 S13: 0.6602 REMARK 3 S21: 0.1486 S22: 0.0874 S23: -0.2861 REMARK 3 S31: -0.0763 S32: 0.0934 S33: -0.1640 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4600 27.2309 44.1575 REMARK 3 T TENSOR REMARK 3 T11: 0.3818 T22: 0.4782 REMARK 3 T33: 0.3805 T12: 0.0449 REMARK 3 T13: 0.0263 T23: -0.1583 REMARK 3 L TENSOR REMARK 3 L11: 5.2035 L22: 2.0586 REMARK 3 L33: 2.0851 L12: 0.9018 REMARK 3 L13: -0.8610 L23: 0.5296 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: -0.8851 S13: 0.5046 REMARK 3 S21: 0.6201 S22: 0.0493 S23: -0.0186 REMARK 3 S31: 0.1985 S32: 0.0614 S33: -0.0335 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5413 34.7154 31.8577 REMARK 3 T TENSOR REMARK 3 T11: 0.3695 T22: 0.2993 REMARK 3 T33: 0.6694 T12: -0.0079 REMARK 3 T13: 0.0524 T23: -0.1338 REMARK 3 L TENSOR REMARK 3 L11: 1.3018 L22: 1.4867 REMARK 3 L33: 1.5699 L12: 0.4358 REMARK 3 L13: -1.1381 L23: -0.3172 REMARK 3 S TENSOR REMARK 3 S11: 0.2284 S12: -0.1806 S13: 0.8018 REMARK 3 S21: 0.3191 S22: -0.0254 S23: -0.2888 REMARK 3 S31: -0.2856 S32: 0.0397 S33: -0.1112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5794 17.0140 26.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.2486 T22: 0.2289 REMARK 3 T33: 0.2367 T12: -0.0065 REMARK 3 T13: 0.0041 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 2.6536 L22: 1.4358 REMARK 3 L33: 1.0779 L12: -0.2315 REMARK 3 L13: -0.2488 L23: -0.7595 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.0344 S13: 0.1305 REMARK 3 S21: -0.0775 S22: -0.0392 S23: -0.1115 REMARK 3 S31: 0.0391 S32: 0.0119 S33: -0.0260 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4300 5.4660 22.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.2503 T22: 0.2099 REMARK 3 T33: 0.2106 T12: 0.0162 REMARK 3 T13: -0.0415 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.8554 L22: 1.8811 REMARK 3 L33: 0.5900 L12: -0.1011 REMARK 3 L13: -0.1503 L23: 1.1505 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.1281 S13: -0.2472 REMARK 3 S21: 0.1902 S22: -0.0106 S23: 0.1162 REMARK 3 S31: 0.2838 S32: -0.0587 S33: 0.0983 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1777 -2.7984 6.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.3827 T22: 0.6076 REMARK 3 T33: 0.4941 T12: -0.0130 REMARK 3 T13: 0.0433 T23: -0.1617 REMARK 3 L TENSOR REMARK 3 L11: 1.0256 L22: 2.3812 REMARK 3 L33: 2.6546 L12: 0.5385 REMARK 3 L13: -0.4821 L23: -0.1210 REMARK 3 S TENSOR REMARK 3 S11: -0.2776 S12: 0.8160 S13: -0.4427 REMARK 3 S21: 0.0257 S22: 0.1844 S23: 0.2101 REMARK 3 S31: 0.1439 S32: -0.6852 S33: 0.0596 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5610 -0.2815 10.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.2720 T22: 0.3721 REMARK 3 T33: 0.3245 T12: 0.0436 REMARK 3 T13: -0.0260 T23: -0.1176 REMARK 3 L TENSOR REMARK 3 L11: 2.3903 L22: 4.7161 REMARK 3 L33: 1.6859 L12: 0.3398 REMARK 3 L13: 0.3273 L23: 0.6121 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: 0.4146 S13: -0.4219 REMARK 3 S21: 0.0902 S22: -0.0798 S23: -0.3410 REMARK 3 S31: 0.2281 S32: -0.0036 S33: 0.0154 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8650 25.5612 15.3112 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.2343 REMARK 3 T33: 0.3192 T12: -0.0085 REMARK 3 T13: -0.0142 T23: 0.0554 REMARK 3 L TENSOR REMARK 3 L11: 2.2965 L22: 1.3120 REMARK 3 L33: 1.5960 L12: 0.4614 REMARK 3 L13: -0.6457 L23: -0.2145 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: 0.2037 S13: 0.3871 REMARK 3 S21: -0.4279 S22: 0.0677 S23: 0.2410 REMARK 3 S31: 0.0629 S32: 0.0150 S33: 0.0079 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2465 31.7474 7.3943 REMARK 3 T TENSOR REMARK 3 T11: 0.5612 T22: 0.4009 REMARK 3 T33: 0.4793 T12: -0.0545 REMARK 3 T13: 0.0651 T23: 0.1260 REMARK 3 L TENSOR REMARK 3 L11: 2.5106 L22: 1.0470 REMARK 3 L33: 1.6831 L12: -0.3966 REMARK 3 L13: -0.9067 L23: 0.4111 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: 0.3964 S13: 0.4007 REMARK 3 S21: -0.6217 S22: -0.0266 S23: -0.0456 REMARK 3 S31: -0.2864 S32: 0.0576 S33: -0.0206 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2923 17.1376 18.1512 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.2451 REMARK 3 T33: 0.2192 T12: -0.0119 REMARK 3 T13: 0.0021 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.4674 L22: 2.0548 REMARK 3 L33: 0.3218 L12: 0.0811 REMARK 3 L13: 0.1525 L23: 0.2791 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0903 S13: 0.1180 REMARK 3 S21: -0.0505 S22: -0.0069 S23: 0.0622 REMARK 3 S31: 0.0174 S32: -0.0041 S33: -0.0172 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5355 5.3801 21.9212 REMARK 3 T TENSOR REMARK 3 T11: 0.2550 T22: 0.2033 REMARK 3 T33: 0.2271 T12: -0.0282 REMARK 3 T13: -0.0316 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.0493 L22: 2.0025 REMARK 3 L33: 1.2222 L12: -0.5049 REMARK 3 L13: 0.1995 L23: -0.4282 REMARK 3 S TENSOR REMARK 3 S11: -0.1130 S12: -0.0372 S13: -0.2838 REMARK 3 S21: -0.3058 S22: 0.0163 S23: -0.1891 REMARK 3 S31: 0.3110 S32: 0.0881 S33: 0.0522 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8403 -4.6097 37.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.3506 T22: 0.5274 REMARK 3 T33: 0.4338 T12: -0.0033 REMARK 3 T13: -0.0190 T23: 0.1662 REMARK 3 L TENSOR REMARK 3 L11: 2.4654 L22: 1.7052 REMARK 3 L33: 3.5164 L12: -0.2908 REMARK 3 L13: -1.0572 L23: -0.5137 REMARK 3 S TENSOR REMARK 3 S11: -0.1464 S12: -0.8004 S13: -0.6503 REMARK 3 S21: 0.2025 S22: 0.0456 S23: -0.0745 REMARK 3 S31: 0.2120 S32: 0.5839 S33: 0.0835 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.1356 2.5083 30.7327 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.3064 REMARK 3 T33: 0.2713 T12: -0.0346 REMARK 3 T13: -0.0716 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 4.1896 L22: 4.8892 REMARK 3 L33: 3.7601 L12: 0.4591 REMARK 3 L13: 0.6444 L23: 0.7683 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: -0.1918 S13: -0.2046 REMARK 3 S21: -0.2192 S22: -0.1645 S23: 0.4397 REMARK 3 S31: 0.1308 S32: -0.2746 S33: 0.0700 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300032116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6M2N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH5.5-6.5, 10%-25% REMARK 280 PEG6000, 3% DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.85400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 51.61600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 303 REMARK 465 THR B 304 REMARK 465 PHE B 305 REMARK 465 GLN B 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 46 OG REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LEU A 50 CG CD1 CD2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LEU A 67 CG CD1 CD2 REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 GLN A 74 CG CD OE1 NE2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 ASP A 153 CG OD1 OD2 REMARK 470 TYR A 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 GLN A 189 CG CD OE1 NE2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 223 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 VAL A 303 CG1 CG2 REMARK 470 PHE A 305 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 SER B 46 OG REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LEU B 50 CG CD1 CD2 REMARK 470 ASN B 51 CG OD1 ND2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 LEU B 67 CG CD1 CD2 REMARK 470 GLN B 74 CG CD OE1 NE2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 ASP B 153 CG OD1 OD2 REMARK 470 TYR B 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 GLN B 189 CG CD OE1 NE2 REMARK 470 ARG B 222 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 223 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 228 CG OD1 ND2 REMARK 470 ASP B 229 CG OD1 OD2 REMARK 470 LEU B 232 CG CD1 CD2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 ASN B 277 CG OD1 ND2 REMARK 470 ARG B 298 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -129.80 54.17 REMARK 500 ASN A 84 -118.42 50.53 REMARK 500 TYR A 154 -109.23 56.71 REMARK 500 ALA A 191 31.53 -90.13 REMARK 500 ASP B 33 -132.63 54.39 REMARK 500 HIS B 41 0.41 -68.32 REMARK 500 ASN B 84 -123.22 54.79 REMARK 500 TYR B 154 -108.15 57.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 8GTW A 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 DBREF 8GTW B 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET K9U A 401 36 HET K9U B 401 36 HETNAM K9U (2S)-4-(3,4-DICHLOROPHENYL)-1-[(2-OXIDANYLIDENE-1H- HETNAM 2 K9U QUINOLIN-4-YL)CARBONYL]-N-[3,3,3-TRIS(FLUORANYL) HETNAM 3 K9U PROPYL]PIPERAZINE-2-CARBOXAMIDE FORMUL 3 K9U 2(C24 H21 CL2 F3 N4 O3) FORMUL 5 HOH *190(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 THR A 45 MET A 49 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 SER A 62 HIS A 64 5 3 HELIX 6 AA6 ILE A 200 ASN A 214 1 15 HELIX 7 AA7 THR A 226 TYR A 237 1 12 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 GLY A 258 1 9 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 CYS A 300 1 9 HELIX 12 AB3 SER B 10 GLY B 15 1 6 HELIX 13 AB4 HIS B 41 CYS B 44 5 4 HELIX 14 AB5 ASN B 53 ARG B 60 1 8 HELIX 15 AB6 SER B 62 HIS B 64 5 3 HELIX 16 AB7 ILE B 200 ASN B 214 1 15 HELIX 17 AB8 THR B 226 TYR B 237 1 12 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 GLY B 275 1 16 HELIX 21 AC3 THR B 292 CYS B 300 1 9 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 CRYST1 51.616 81.708 89.079 90.00 97.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019374 0.000000 0.002444 0.00000 SCALE2 0.000000 0.012239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011315 0.00000