data_8GZ9 # _entry.id 8GZ9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GZ9 pdb_00008gz9 10.2210/pdb8gz9/pdb WWPDB D_1300032467 ? ? EMDB EMD-34393 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-09-20 2 'Structure model' 1 1 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_ISSN' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GZ9 _pdbx_database_status.recvd_initial_deposition_date 2022-09-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of Abeta2 fibril polymorph2' _pdbx_database_related.db_id EMD-34393 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email xiawc@sioc.ac.cn _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xia, W.C.' 1 ? 'Zhang, M.M.' 2 ? 'Liu, C.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 10914 _citation.page_last 10924 _citation.title 'Engineering of antimicrobial peptide fibrils with feedback degradation of bacterial-secreted enzymes.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d3sc01089a _citation.pdbx_database_id_PubMed 37829030 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, F.' 1 ? primary 'Xia, W.' 2 ? primary 'Zhang, M.' 3 ? primary 'Wu, R.' 4 ? primary 'Song, X.' 5 ? primary 'Hao, Y.' 6 ? primary 'Feng, Y.' 7 ? primary 'Zhang, L.' 8 ? primary 'Li, D.' 9 ? primary 'Kang, W.' 10 ? primary 'Liu, C.' 11 0000-0003-3425-6672 primary 'Liu, L.' 12 0000-0002-6265-9412 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'peptide self-assembled antimicrobial fibrils' 1083.346 34 ? ? ? ? 2 water nat water 18.015 24 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPLGMLGGVVIA _entity_poly.pdbx_seq_one_letter_code_can GPLGMLGGVVIA _entity_poly.pdbx_strand_id B,A,C,D,N,F,V,d,O,G,W,e,P,H,X,f,Q,I,Y,g,R,J,Z,S,K,a,i,T,b,j,U,M,c,k _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 MET n 1 6 LEU n 1 7 GLY n 1 8 GLY n 1 9 VAL n 1 10 VAL n 1 11 ILE n 1 12 ALA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY B . n A 1 2 PRO 2 2 2 PRO PRO B . n A 1 3 LEU 3 3 3 LEU LEU B . n A 1 4 GLY 4 4 4 GLY GLY B . n A 1 5 MET 5 5 5 MET MET B . n A 1 6 LEU 6 6 6 LEU LEU B . n A 1 7 GLY 7 7 7 GLY GLY B . n A 1 8 GLY 8 8 8 GLY GLY B . n A 1 9 VAL 9 9 9 VAL VAL B . n A 1 10 VAL 10 10 10 VAL VAL B . n A 1 11 ILE 11 11 11 ILE ILE B . n A 1 12 ALA 12 12 12 ALA ALA B . n B 1 1 GLY 1 1 1 GLY GLY A . n B 1 2 PRO 2 2 2 PRO PRO A . n B 1 3 LEU 3 3 3 LEU LEU A . n B 1 4 GLY 4 4 4 GLY GLY A . n B 1 5 MET 5 5 5 MET MET A . n B 1 6 LEU 6 6 6 LEU LEU A . n B 1 7 GLY 7 7 7 GLY GLY A . n B 1 8 GLY 8 8 8 GLY GLY A . n B 1 9 VAL 9 9 9 VAL VAL A . n B 1 10 VAL 10 10 10 VAL VAL A . n B 1 11 ILE 11 11 11 ILE ILE A . n B 1 12 ALA 12 12 12 ALA ALA A . n C 1 1 GLY 1 1 1 GLY GLY C . n C 1 2 PRO 2 2 2 PRO PRO C . n C 1 3 LEU 3 3 3 LEU LEU C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 MET 5 5 5 MET MET C . n C 1 6 LEU 6 6 6 LEU LEU C . n C 1 7 GLY 7 7 7 GLY GLY C . n C 1 8 GLY 8 8 8 GLY GLY C . n C 1 9 VAL 9 9 9 VAL VAL C . n C 1 10 VAL 10 10 10 VAL VAL C . n C 1 11 ILE 11 11 11 ILE ILE C . n C 1 12 ALA 12 12 12 ALA ALA C . n D 1 1 GLY 1 1 1 GLY GLY D . n D 1 2 PRO 2 2 2 PRO PRO D . n D 1 3 LEU 3 3 3 LEU LEU D . n D 1 4 GLY 4 4 4 GLY GLY D . n D 1 5 MET 5 5 5 MET MET D . n D 1 6 LEU 6 6 6 LEU LEU D . n D 1 7 GLY 7 7 7 GLY GLY D . n D 1 8 GLY 8 8 8 GLY GLY D . n D 1 9 VAL 9 9 9 VAL VAL D . n D 1 10 VAL 10 10 10 VAL VAL D . n D 1 11 ILE 11 11 11 ILE ILE D . n D 1 12 ALA 12 12 12 ALA ALA D . n E 1 1 GLY 1 1 1 GLY GLY N . n E 1 2 PRO 2 2 2 PRO PRO N . n E 1 3 LEU 3 3 3 LEU LEU N . n E 1 4 GLY 4 4 4 GLY GLY N . n E 1 5 MET 5 5 5 MET MET N . n E 1 6 LEU 6 6 6 LEU LEU N . n E 1 7 GLY 7 7 7 GLY GLY N . n E 1 8 GLY 8 8 8 GLY GLY N . n E 1 9 VAL 9 9 9 VAL VAL N . n E 1 10 VAL 10 10 10 VAL VAL N . n E 1 11 ILE 11 11 11 ILE ILE N . n E 1 12 ALA 12 12 12 ALA ALA N . n F 1 1 GLY 1 1 ? ? ? F . n F 1 2 PRO 2 2 ? ? ? F . n F 1 3 LEU 3 3 ? ? ? F . n F 1 4 GLY 4 4 4 GLY GLY F . n F 1 5 MET 5 5 5 MET MET F . n F 1 6 LEU 6 6 6 LEU LEU F . n F 1 7 GLY 7 7 7 GLY GLY F . n F 1 8 GLY 8 8 8 GLY GLY F . n F 1 9 VAL 9 9 9 VAL VAL F . n F 1 10 VAL 10 10 10 VAL VAL F . n F 1 11 ILE 11 11 11 ILE ILE F . n F 1 12 ALA 12 12 12 ALA ALA F . n G 1 1 GLY 1 1 1 GLY GLY V . n G 1 2 PRO 2 2 2 PRO PRO V . n G 1 3 LEU 3 3 3 LEU LEU V . n G 1 4 GLY 4 4 4 GLY GLY V . n G 1 5 MET 5 5 5 MET MET V . n G 1 6 LEU 6 6 6 LEU LEU V . n G 1 7 GLY 7 7 7 GLY GLY V . n G 1 8 GLY 8 8 8 GLY GLY V . n G 1 9 VAL 9 9 9 VAL VAL V . n G 1 10 VAL 10 10 10 VAL VAL V . n G 1 11 ILE 11 11 11 ILE ILE V . n G 1 12 ALA 12 12 12 ALA ALA V . n H 1 1 GLY 1 1 1 GLY GLY d . n H 1 2 PRO 2 2 2 PRO PRO d . n H 1 3 LEU 3 3 3 LEU LEU d . n H 1 4 GLY 4 4 4 GLY GLY d . n H 1 5 MET 5 5 5 MET MET d . n H 1 6 LEU 6 6 6 LEU LEU d . n H 1 7 GLY 7 7 7 GLY GLY d . n H 1 8 GLY 8 8 8 GLY GLY d . n H 1 9 VAL 9 9 9 VAL VAL d . n H 1 10 VAL 10 10 10 VAL VAL d . n H 1 11 ILE 11 11 11 ILE ILE d . n H 1 12 ALA 12 12 12 ALA ALA d . n I 1 1 GLY 1 1 1 GLY GLY O . n I 1 2 PRO 2 2 2 PRO PRO O . n I 1 3 LEU 3 3 3 LEU LEU O . n I 1 4 GLY 4 4 4 GLY GLY O . n I 1 5 MET 5 5 5 MET MET O . n I 1 6 LEU 6 6 6 LEU LEU O . n I 1 7 GLY 7 7 7 GLY GLY O . n I 1 8 GLY 8 8 8 GLY GLY O . n I 1 9 VAL 9 9 9 VAL VAL O . n I 1 10 VAL 10 10 10 VAL VAL O . n I 1 11 ILE 11 11 11 ILE ILE O . n I 1 12 ALA 12 12 12 ALA ALA O . n J 1 1 GLY 1 1 1 GLY GLY G . n J 1 2 PRO 2 2 2 PRO PRO G . n J 1 3 LEU 3 3 3 LEU LEU G . n J 1 4 GLY 4 4 4 GLY GLY G . n J 1 5 MET 5 5 5 MET MET G . n J 1 6 LEU 6 6 6 LEU LEU G . n J 1 7 GLY 7 7 7 GLY GLY G . n J 1 8 GLY 8 8 8 GLY GLY G . n J 1 9 VAL 9 9 9 VAL VAL G . n J 1 10 VAL 10 10 10 VAL VAL G . n J 1 11 ILE 11 11 11 ILE ILE G . n J 1 12 ALA 12 12 12 ALA ALA G . n K 1 1 GLY 1 1 1 GLY GLY W . n K 1 2 PRO 2 2 2 PRO PRO W . n K 1 3 LEU 3 3 3 LEU LEU W . n K 1 4 GLY 4 4 4 GLY GLY W . n K 1 5 MET 5 5 5 MET MET W . n K 1 6 LEU 6 6 6 LEU LEU W . n K 1 7 GLY 7 7 7 GLY GLY W . n K 1 8 GLY 8 8 8 GLY GLY W . n K 1 9 VAL 9 9 9 VAL VAL W . n K 1 10 VAL 10 10 10 VAL VAL W . n K 1 11 ILE 11 11 11 ILE ILE W . n K 1 12 ALA 12 12 12 ALA ALA W . n L 1 1 GLY 1 1 ? ? ? e . n L 1 2 PRO 2 2 ? ? ? e . n L 1 3 LEU 3 3 ? ? ? e . n L 1 4 GLY 4 4 4 GLY GLY e . n L 1 5 MET 5 5 5 MET MET e . n L 1 6 LEU 6 6 6 LEU LEU e . n L 1 7 GLY 7 7 7 GLY GLY e . n L 1 8 GLY 8 8 8 GLY GLY e . n L 1 9 VAL 9 9 9 VAL VAL e . n L 1 10 VAL 10 10 10 VAL VAL e . n L 1 11 ILE 11 11 11 ILE ILE e . n L 1 12 ALA 12 12 12 ALA ALA e . n M 1 1 GLY 1 1 1 GLY GLY P . n M 1 2 PRO 2 2 2 PRO PRO P . n M 1 3 LEU 3 3 3 LEU LEU P . n M 1 4 GLY 4 4 4 GLY GLY P . n M 1 5 MET 5 5 5 MET MET P . n M 1 6 LEU 6 6 6 LEU LEU P . n M 1 7 GLY 7 7 7 GLY GLY P . n M 1 8 GLY 8 8 8 GLY GLY P . n M 1 9 VAL 9 9 9 VAL VAL P . n M 1 10 VAL 10 10 10 VAL VAL P . n M 1 11 ILE 11 11 11 ILE ILE P . n M 1 12 ALA 12 12 12 ALA ALA P . n N 1 1 GLY 1 1 1 GLY GLY H . n N 1 2 PRO 2 2 2 PRO PRO H . n N 1 3 LEU 3 3 3 LEU LEU H . n N 1 4 GLY 4 4 4 GLY GLY H . n N 1 5 MET 5 5 5 MET MET H . n N 1 6 LEU 6 6 6 LEU LEU H . n N 1 7 GLY 7 7 7 GLY GLY H . n N 1 8 GLY 8 8 8 GLY GLY H . n N 1 9 VAL 9 9 9 VAL VAL H . n N 1 10 VAL 10 10 10 VAL VAL H . n N 1 11 ILE 11 11 11 ILE ILE H . n N 1 12 ALA 12 12 12 ALA ALA H . n O 1 1 GLY 1 1 1 GLY GLY X . n O 1 2 PRO 2 2 2 PRO PRO X . n O 1 3 LEU 3 3 3 LEU LEU X . n O 1 4 GLY 4 4 4 GLY GLY X . n O 1 5 MET 5 5 5 MET MET X . n O 1 6 LEU 6 6 6 LEU LEU X . n O 1 7 GLY 7 7 7 GLY GLY X . n O 1 8 GLY 8 8 8 GLY GLY X . n O 1 9 VAL 9 9 9 VAL VAL X . n O 1 10 VAL 10 10 10 VAL VAL X . n O 1 11 ILE 11 11 11 ILE ILE X . n O 1 12 ALA 12 12 12 ALA ALA X . n P 1 1 GLY 1 1 1 GLY GLY f . n P 1 2 PRO 2 2 2 PRO PRO f . n P 1 3 LEU 3 3 3 LEU LEU f . n P 1 4 GLY 4 4 4 GLY GLY f . n P 1 5 MET 5 5 5 MET MET f . n P 1 6 LEU 6 6 6 LEU LEU f . n P 1 7 GLY 7 7 7 GLY GLY f . n P 1 8 GLY 8 8 8 GLY GLY f . n P 1 9 VAL 9 9 9 VAL VAL f . n P 1 10 VAL 10 10 10 VAL VAL f . n P 1 11 ILE 11 11 11 ILE ILE f . n P 1 12 ALA 12 12 12 ALA ALA f . n Q 1 1 GLY 1 1 1 GLY GLY Q . n Q 1 2 PRO 2 2 2 PRO PRO Q . n Q 1 3 LEU 3 3 3 LEU LEU Q . n Q 1 4 GLY 4 4 4 GLY GLY Q . n Q 1 5 MET 5 5 5 MET MET Q . n Q 1 6 LEU 6 6 6 LEU LEU Q . n Q 1 7 GLY 7 7 7 GLY GLY Q . n Q 1 8 GLY 8 8 8 GLY GLY Q . n Q 1 9 VAL 9 9 9 VAL VAL Q . n Q 1 10 VAL 10 10 10 VAL VAL Q . n Q 1 11 ILE 11 11 11 ILE ILE Q . n Q 1 12 ALA 12 12 12 ALA ALA Q . n R 1 1 GLY 1 1 ? ? ? I . n R 1 2 PRO 2 2 ? ? ? I . n R 1 3 LEU 3 3 ? ? ? I . n R 1 4 GLY 4 4 4 GLY GLY I . n R 1 5 MET 5 5 5 MET MET I . n R 1 6 LEU 6 6 6 LEU LEU I . n R 1 7 GLY 7 7 7 GLY GLY I . n R 1 8 GLY 8 8 8 GLY GLY I . n R 1 9 VAL 9 9 9 VAL VAL I . n R 1 10 VAL 10 10 10 VAL VAL I . n R 1 11 ILE 11 11 11 ILE ILE I . n R 1 12 ALA 12 12 12 ALA ALA I . n S 1 1 GLY 1 1 1 GLY GLY Y . n S 1 2 PRO 2 2 2 PRO PRO Y . n S 1 3 LEU 3 3 3 LEU LEU Y . n S 1 4 GLY 4 4 4 GLY GLY Y . n S 1 5 MET 5 5 5 MET MET Y . n S 1 6 LEU 6 6 6 LEU LEU Y . n S 1 7 GLY 7 7 7 GLY GLY Y . n S 1 8 GLY 8 8 8 GLY GLY Y . n S 1 9 VAL 9 9 9 VAL VAL Y . n S 1 10 VAL 10 10 10 VAL VAL Y . n S 1 11 ILE 11 11 11 ILE ILE Y . n S 1 12 ALA 12 12 12 ALA ALA Y . n T 1 1 GLY 1 1 1 GLY GLY g . n T 1 2 PRO 2 2 2 PRO PRO g . n T 1 3 LEU 3 3 3 LEU LEU g . n T 1 4 GLY 4 4 4 GLY GLY g . n T 1 5 MET 5 5 5 MET MET g . n T 1 6 LEU 6 6 6 LEU LEU g . n T 1 7 GLY 7 7 7 GLY GLY g . n T 1 8 GLY 8 8 8 GLY GLY g . n T 1 9 VAL 9 9 9 VAL VAL g . n T 1 10 VAL 10 10 10 VAL VAL g . n T 1 11 ILE 11 11 11 ILE ILE g . n T 1 12 ALA 12 12 12 ALA ALA g . n U 1 1 GLY 1 1 1 GLY GLY R . n U 1 2 PRO 2 2 2 PRO PRO R . n U 1 3 LEU 3 3 3 LEU LEU R . n U 1 4 GLY 4 4 4 GLY GLY R . n U 1 5 MET 5 5 5 MET MET R . n U 1 6 LEU 6 6 6 LEU LEU R . n U 1 7 GLY 7 7 7 GLY GLY R . n U 1 8 GLY 8 8 8 GLY GLY R . n U 1 9 VAL 9 9 9 VAL VAL R . n U 1 10 VAL 10 10 10 VAL VAL R . n U 1 11 ILE 11 11 11 ILE ILE R . n U 1 12 ALA 12 12 12 ALA ALA R . n V 1 1 GLY 1 1 1 GLY GLY J . n V 1 2 PRO 2 2 2 PRO PRO J . n V 1 3 LEU 3 3 3 LEU LEU J . n V 1 4 GLY 4 4 4 GLY GLY J . n V 1 5 MET 5 5 5 MET MET J . n V 1 6 LEU 6 6 6 LEU LEU J . n V 1 7 GLY 7 7 7 GLY GLY J . n V 1 8 GLY 8 8 8 GLY GLY J . n V 1 9 VAL 9 9 9 VAL VAL J . n V 1 10 VAL 10 10 10 VAL VAL J . n V 1 11 ILE 11 11 11 ILE ILE J . n V 1 12 ALA 12 12 12 ALA ALA J . n W 1 1 GLY 1 1 ? ? ? Z . n W 1 2 PRO 2 2 ? ? ? Z . n W 1 3 LEU 3 3 ? ? ? Z . n W 1 4 GLY 4 4 4 GLY GLY Z . n W 1 5 MET 5 5 5 MET MET Z . n W 1 6 LEU 6 6 6 LEU LEU Z . n W 1 7 GLY 7 7 7 GLY GLY Z . n W 1 8 GLY 8 8 8 GLY GLY Z . n W 1 9 VAL 9 9 9 VAL VAL Z . n W 1 10 VAL 10 10 10 VAL VAL Z . n W 1 11 ILE 11 11 11 ILE ILE Z . n W 1 12 ALA 12 12 12 ALA ALA Z . n X 1 1 GLY 1 1 1 GLY GLY S . n X 1 2 PRO 2 2 2 PRO PRO S . n X 1 3 LEU 3 3 3 LEU LEU S . n X 1 4 GLY 4 4 4 GLY GLY S . n X 1 5 MET 5 5 5 MET MET S . n X 1 6 LEU 6 6 6 LEU LEU S . n X 1 7 GLY 7 7 7 GLY GLY S . n X 1 8 GLY 8 8 8 GLY GLY S . n X 1 9 VAL 9 9 9 VAL VAL S . n X 1 10 VAL 10 10 10 VAL VAL S . n X 1 11 ILE 11 11 11 ILE ILE S . n X 1 12 ALA 12 12 12 ALA ALA S . n Y 1 1 GLY 1 1 1 GLY GLY K . n Y 1 2 PRO 2 2 2 PRO PRO K . n Y 1 3 LEU 3 3 3 LEU LEU K . n Y 1 4 GLY 4 4 4 GLY GLY K . n Y 1 5 MET 5 5 5 MET MET K . n Y 1 6 LEU 6 6 6 LEU LEU K . n Y 1 7 GLY 7 7 7 GLY GLY K . n Y 1 8 GLY 8 8 8 GLY GLY K . n Y 1 9 VAL 9 9 9 VAL VAL K . n Y 1 10 VAL 10 10 10 VAL VAL K . n Y 1 11 ILE 11 11 11 ILE ILE K . n Y 1 12 ALA 12 12 12 ALA ALA K . n Z 1 1 GLY 1 1 1 GLY GLY a . n Z 1 2 PRO 2 2 2 PRO PRO a . n Z 1 3 LEU 3 3 3 LEU LEU a . n Z 1 4 GLY 4 4 4 GLY GLY a . n Z 1 5 MET 5 5 5 MET MET a . n Z 1 6 LEU 6 6 6 LEU LEU a . n Z 1 7 GLY 7 7 7 GLY GLY a . n Z 1 8 GLY 8 8 8 GLY GLY a . n Z 1 9 VAL 9 9 9 VAL VAL a . n Z 1 10 VAL 10 10 10 VAL VAL a . n Z 1 11 ILE 11 11 11 ILE ILE a . n Z 1 12 ALA 12 12 12 ALA ALA a . n AA 1 1 GLY 1 1 1 GLY GLY i . n AA 1 2 PRO 2 2 2 PRO PRO i . n AA 1 3 LEU 3 3 3 LEU LEU i . n AA 1 4 GLY 4 4 4 GLY GLY i . n AA 1 5 MET 5 5 5 MET MET i . n AA 1 6 LEU 6 6 6 LEU LEU i . n AA 1 7 GLY 7 7 7 GLY GLY i . n AA 1 8 GLY 8 8 8 GLY GLY i . n AA 1 9 VAL 9 9 9 VAL VAL i . n AA 1 10 VAL 10 10 10 VAL VAL i . n AA 1 11 ILE 11 11 11 ILE ILE i . n AA 1 12 ALA 12 12 12 ALA ALA i . n BA 1 1 GLY 1 1 ? ? ? T . n BA 1 2 PRO 2 2 ? ? ? T . n BA 1 3 LEU 3 3 ? ? ? T . n BA 1 4 GLY 4 4 4 GLY GLY T . n BA 1 5 MET 5 5 5 MET MET T . n BA 1 6 LEU 6 6 6 LEU LEU T . n BA 1 7 GLY 7 7 7 GLY GLY T . n BA 1 8 GLY 8 8 8 GLY GLY T . n BA 1 9 VAL 9 9 9 VAL VAL T . n BA 1 10 VAL 10 10 10 VAL VAL T . n BA 1 11 ILE 11 11 11 ILE ILE T . n BA 1 12 ALA 12 12 12 ALA ALA T . n CA 1 1 GLY 1 1 1 GLY GLY b . n CA 1 2 PRO 2 2 2 PRO PRO b . n CA 1 3 LEU 3 3 3 LEU LEU b . n CA 1 4 GLY 4 4 4 GLY GLY b . n CA 1 5 MET 5 5 5 MET MET b . n CA 1 6 LEU 6 6 6 LEU LEU b . n CA 1 7 GLY 7 7 7 GLY GLY b . n CA 1 8 GLY 8 8 8 GLY GLY b . n CA 1 9 VAL 9 9 9 VAL VAL b . n CA 1 10 VAL 10 10 10 VAL VAL b . n CA 1 11 ILE 11 11 11 ILE ILE b . n CA 1 12 ALA 12 12 12 ALA ALA b . n DA 1 1 GLY 1 1 1 GLY GLY j . n DA 1 2 PRO 2 2 2 PRO PRO j . n DA 1 3 LEU 3 3 3 LEU LEU j . n DA 1 4 GLY 4 4 4 GLY GLY j . n DA 1 5 MET 5 5 5 MET MET j . n DA 1 6 LEU 6 6 6 LEU LEU j . n DA 1 7 GLY 7 7 7 GLY GLY j . n DA 1 8 GLY 8 8 8 GLY GLY j . n DA 1 9 VAL 9 9 9 VAL VAL j . n DA 1 10 VAL 10 10 10 VAL VAL j . n DA 1 11 ILE 11 11 11 ILE ILE j . n DA 1 12 ALA 12 12 12 ALA ALA j . n EA 1 1 GLY 1 1 1 GLY GLY U . n EA 1 2 PRO 2 2 2 PRO PRO U . n EA 1 3 LEU 3 3 3 LEU LEU U . n EA 1 4 GLY 4 4 4 GLY GLY U . n EA 1 5 MET 5 5 5 MET MET U . n EA 1 6 LEU 6 6 6 LEU LEU U . n EA 1 7 GLY 7 7 7 GLY GLY U . n EA 1 8 GLY 8 8 8 GLY GLY U . n EA 1 9 VAL 9 9 9 VAL VAL U . n EA 1 10 VAL 10 10 10 VAL VAL U . n EA 1 11 ILE 11 11 11 ILE ILE U . n EA 1 12 ALA 12 12 12 ALA ALA U . n FA 1 1 GLY 1 1 1 GLY GLY M . n FA 1 2 PRO 2 2 2 PRO PRO M . n FA 1 3 LEU 3 3 3 LEU LEU M . n FA 1 4 GLY 4 4 4 GLY GLY M . n FA 1 5 MET 5 5 5 MET MET M . n FA 1 6 LEU 6 6 6 LEU LEU M . n FA 1 7 GLY 7 7 7 GLY GLY M . n FA 1 8 GLY 8 8 8 GLY GLY M . n FA 1 9 VAL 9 9 9 VAL VAL M . n FA 1 10 VAL 10 10 10 VAL VAL M . n FA 1 11 ILE 11 11 11 ILE ILE M . n FA 1 12 ALA 12 12 12 ALA ALA M . n GA 1 1 GLY 1 1 1 GLY GLY c . n GA 1 2 PRO 2 2 2 PRO PRO c . n GA 1 3 LEU 3 3 3 LEU LEU c . n GA 1 4 GLY 4 4 4 GLY GLY c . n GA 1 5 MET 5 5 5 MET MET c . n GA 1 6 LEU 6 6 6 LEU LEU c . n GA 1 7 GLY 7 7 7 GLY GLY c . n GA 1 8 GLY 8 8 8 GLY GLY c . n GA 1 9 VAL 9 9 9 VAL VAL c . n GA 1 10 VAL 10 10 10 VAL VAL c . n GA 1 11 ILE 11 11 11 ILE ILE c . n GA 1 12 ALA 12 12 12 ALA ALA c . n HA 1 1 GLY 1 1 ? ? ? k . n HA 1 2 PRO 2 2 ? ? ? k . n HA 1 3 LEU 3 3 ? ? ? k . n HA 1 4 GLY 4 4 4 GLY GLY k . n HA 1 5 MET 5 5 5 MET MET k . n HA 1 6 LEU 6 6 6 LEU LEU k . n HA 1 7 GLY 7 7 7 GLY GLY k . n HA 1 8 GLY 8 8 8 GLY GLY k . n HA 1 9 VAL 9 9 9 VAL VAL k . n HA 1 10 VAL 10 10 10 VAL VAL k . n HA 1 11 ILE 11 11 11 ILE ILE k . n HA 1 12 ALA 12 12 12 ALA ALA k . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code IA 2 HOH 1 101 2 HOH HOH B . JA 2 HOH 1 101 1 HOH HOH A . KA 2 HOH 1 101 2 HOH HOH C . LA 2 HOH 1 101 2 HOH HOH D . MA 2 HOH 1 101 7 HOH HOH N . NA 2 HOH 1 101 8 HOH HOH V . OA 2 HOH 1 101 1 HOH HOH d . PA 2 HOH 1 101 3 HOH HOH O . QA 2 HOH 1 101 11 HOH HOH G . RA 2 HOH 1 101 13 HOH HOH W . SA 2 HOH 1 101 10 HOH HOH P . TA 2 HOH 1 101 16 HOH HOH H . UA 2 HOH 1 101 15 HOH HOH f . VA 2 HOH 1 101 9 HOH HOH Q . WA 2 HOH 1 101 17 HOH HOH g . XA 2 HOH 1 101 12 HOH HOH R . YA 2 HOH 1 101 14 HOH HOH J . ZA 2 HOH 1 101 2 HOH HOH K . AB 2 HOH 1 101 5 HOH HOH a . BB 2 HOH 1 101 3 HOH HOH i . CB 2 HOH 1 101 6 HOH HOH b . DB 2 HOH 1 101 2 HOH HOH j . EB 2 HOH 1 101 4 HOH HOH M . FB 2 HOH 1 101 4 HOH HOH c . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8GZ9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GZ9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8GZ9 _struct.title 'Cryo-EM structure of Abeta2 fibril polymorph2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GZ9 _struct_keywords.text 'antimicrobial fibrils, amyloid, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? BA N N 1 ? CA N N 1 ? DA N N 1 ? EA N N 1 ? FA N N 1 ? GA N N 1 ? HA N N 1 ? IA N N 2 ? JA N N 2 ? KA N N 2 ? LA N N 2 ? MA N N 2 ? NA N N 2 ? OA N N 2 ? PA N N 2 ? QA N N 2 ? RA N N 2 ? SA N N 2 ? TA N N 2 ? UA N N 2 ? VA N N 2 ? WA N N 2 ? XA N N 2 ? YA N N 2 ? ZA N N 2 ? AB N N 2 ? BB N N 2 ? CB N N 2 ? DB N N 2 ? EB N N 2 ? FB N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8GZ9 _struct_ref.pdbx_db_accession 8GZ9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8GZ9 B 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 2 1 8GZ9 A 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 3 1 8GZ9 C 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 4 1 8GZ9 D 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 5 1 8GZ9 N 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 6 1 8GZ9 F 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 7 1 8GZ9 V 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 8 1 8GZ9 d 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 9 1 8GZ9 O 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 10 1 8GZ9 G 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 11 1 8GZ9 W 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 12 1 8GZ9 e 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 13 1 8GZ9 P 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 14 1 8GZ9 H 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 15 1 8GZ9 X 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 16 1 8GZ9 f 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 17 1 8GZ9 Q 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 18 1 8GZ9 I 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 19 1 8GZ9 Y 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 20 1 8GZ9 g 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 21 1 8GZ9 R 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 22 1 8GZ9 J 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 23 1 8GZ9 Z 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 24 1 8GZ9 S 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 25 1 8GZ9 K 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 26 1 8GZ9 a 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 27 1 8GZ9 i 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 28 1 8GZ9 T 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 29 1 8GZ9 b 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 30 1 8GZ9 j 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 31 1 8GZ9 U 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 32 1 8GZ9 M 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 33 1 8GZ9 c 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 34 1 8GZ9 k 1 ? 12 ? 8GZ9 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list ;A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB ; # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8GZ9 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8GZ9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.62 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 53633 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'peptide self-assembled antimicrobial fibrils' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8GZ9 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1400 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8GZ9 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8GZ9 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 F GLY 1 ? F GLY 1 2 1 Y 1 F PRO 2 ? F PRO 2 3 1 Y 1 F LEU 3 ? F LEU 3 4 1 Y 1 e GLY 1 ? L GLY 1 5 1 Y 1 e PRO 2 ? L PRO 2 6 1 Y 1 e LEU 3 ? L LEU 3 7 1 Y 1 I GLY 1 ? R GLY 1 8 1 Y 1 I PRO 2 ? R PRO 2 9 1 Y 1 I LEU 3 ? R LEU 3 10 1 Y 1 Z GLY 1 ? W GLY 1 11 1 Y 1 Z PRO 2 ? W PRO 2 12 1 Y 1 Z LEU 3 ? W LEU 3 13 1 Y 1 T GLY 1 ? BA GLY 1 14 1 Y 1 T PRO 2 ? BA PRO 2 15 1 Y 1 T LEU 3 ? BA LEU 3 16 1 Y 1 k GLY 1 ? HA GLY 1 17 1 Y 1 k PRO 2 ? HA PRO 2 18 1 Y 1 k LEU 3 ? HA LEU 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 HOH O O N N 24 HOH H1 H N N 25 HOH H2 H N N 26 ILE N N N N 27 ILE CA C N S 28 ILE C C N N 29 ILE O O N N 30 ILE CB C N S 31 ILE CG1 C N N 32 ILE CG2 C N N 33 ILE CD1 C N N 34 ILE OXT O N N 35 ILE H H N N 36 ILE H2 H N N 37 ILE HA H N N 38 ILE HB H N N 39 ILE HG12 H N N 40 ILE HG13 H N N 41 ILE HG21 H N N 42 ILE HG22 H N N 43 ILE HG23 H N N 44 ILE HD11 H N N 45 ILE HD12 H N N 46 ILE HD13 H N N 47 ILE HXT H N N 48 LEU N N N N 49 LEU CA C N S 50 LEU C C N N 51 LEU O O N N 52 LEU CB C N N 53 LEU CG C N N 54 LEU CD1 C N N 55 LEU CD2 C N N 56 LEU OXT O N N 57 LEU H H N N 58 LEU H2 H N N 59 LEU HA H N N 60 LEU HB2 H N N 61 LEU HB3 H N N 62 LEU HG H N N 63 LEU HD11 H N N 64 LEU HD12 H N N 65 LEU HD13 H N N 66 LEU HD21 H N N 67 LEU HD22 H N N 68 LEU HD23 H N N 69 LEU HXT H N N 70 MET N N N N 71 MET CA C N S 72 MET C C N N 73 MET O O N N 74 MET CB C N N 75 MET CG C N N 76 MET SD S N N 77 MET CE C N N 78 MET OXT O N N 79 MET H H N N 80 MET H2 H N N 81 MET HA H N N 82 MET HB2 H N N 83 MET HB3 H N N 84 MET HG2 H N N 85 MET HG3 H N N 86 MET HE1 H N N 87 MET HE2 H N N 88 MET HE3 H N N 89 MET HXT H N N 90 PRO N N N N 91 PRO CA C N S 92 PRO C C N N 93 PRO O O N N 94 PRO CB C N N 95 PRO CG C N N 96 PRO CD C N N 97 PRO OXT O N N 98 PRO H H N N 99 PRO HA H N N 100 PRO HB2 H N N 101 PRO HB3 H N N 102 PRO HG2 H N N 103 PRO HG3 H N N 104 PRO HD2 H N N 105 PRO HD3 H N N 106 PRO HXT H N N 107 VAL N N N N 108 VAL CA C N S 109 VAL C C N N 110 VAL O O N N 111 VAL CB C N N 112 VAL CG1 C N N 113 VAL CG2 C N N 114 VAL OXT O N N 115 VAL H H N N 116 VAL H2 H N N 117 VAL HA H N N 118 VAL HB H N N 119 VAL HG11 H N N 120 VAL HG12 H N N 121 VAL HG13 H N N 122 VAL HG21 H N N 123 VAL HG22 H N N 124 VAL HG23 H N N 125 VAL HXT H N N 126 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 HOH O H1 sing N N 22 HOH O H2 sing N N 23 ILE N CA sing N N 24 ILE N H sing N N 25 ILE N H2 sing N N 26 ILE CA C sing N N 27 ILE CA CB sing N N 28 ILE CA HA sing N N 29 ILE C O doub N N 30 ILE C OXT sing N N 31 ILE CB CG1 sing N N 32 ILE CB CG2 sing N N 33 ILE CB HB sing N N 34 ILE CG1 CD1 sing N N 35 ILE CG1 HG12 sing N N 36 ILE CG1 HG13 sing N N 37 ILE CG2 HG21 sing N N 38 ILE CG2 HG22 sing N N 39 ILE CG2 HG23 sing N N 40 ILE CD1 HD11 sing N N 41 ILE CD1 HD12 sing N N 42 ILE CD1 HD13 sing N N 43 ILE OXT HXT sing N N 44 LEU N CA sing N N 45 LEU N H sing N N 46 LEU N H2 sing N N 47 LEU CA C sing N N 48 LEU CA CB sing N N 49 LEU CA HA sing N N 50 LEU C O doub N N 51 LEU C OXT sing N N 52 LEU CB CG sing N N 53 LEU CB HB2 sing N N 54 LEU CB HB3 sing N N 55 LEU CG CD1 sing N N 56 LEU CG CD2 sing N N 57 LEU CG HG sing N N 58 LEU CD1 HD11 sing N N 59 LEU CD1 HD12 sing N N 60 LEU CD1 HD13 sing N N 61 LEU CD2 HD21 sing N N 62 LEU CD2 HD22 sing N N 63 LEU CD2 HD23 sing N N 64 LEU OXT HXT sing N N 65 MET N CA sing N N 66 MET N H sing N N 67 MET N H2 sing N N 68 MET CA C sing N N 69 MET CA CB sing N N 70 MET CA HA sing N N 71 MET C O doub N N 72 MET C OXT sing N N 73 MET CB CG sing N N 74 MET CB HB2 sing N N 75 MET CB HB3 sing N N 76 MET CG SD sing N N 77 MET CG HG2 sing N N 78 MET CG HG3 sing N N 79 MET SD CE sing N N 80 MET CE HE1 sing N N 81 MET CE HE2 sing N N 82 MET CE HE3 sing N N 83 MET OXT HXT sing N N 84 PRO N CA sing N N 85 PRO N CD sing N N 86 PRO N H sing N N 87 PRO CA C sing N N 88 PRO CA CB sing N N 89 PRO CA HA sing N N 90 PRO C O doub N N 91 PRO C OXT sing N N 92 PRO CB CG sing N N 93 PRO CB HB2 sing N N 94 PRO CB HB3 sing N N 95 PRO CG CD sing N N 96 PRO CG HG2 sing N N 97 PRO CG HG3 sing N N 98 PRO CD HD2 sing N N 99 PRO CD HD3 sing N N 100 PRO OXT HXT sing N N 101 VAL N CA sing N N 102 VAL N H sing N N 103 VAL N H2 sing N N 104 VAL CA C sing N N 105 VAL CA CB sing N N 106 VAL CA HA sing N N 107 VAL C O doub N N 108 VAL C OXT sing N N 109 VAL CB CG1 sing N N 110 VAL CB CG2 sing N N 111 VAL CB HB sing N N 112 VAL CG1 HG11 sing N N 113 VAL CG1 HG12 sing N N 114 VAL CG1 HG13 sing N N 115 VAL CG2 HG21 sing N N 116 VAL CG2 HG22 sing N N 117 VAL CG2 HG23 sing N N 118 VAL OXT HXT sing N N 119 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.548 _em_helical_entity.axial_rise_per_subunit 2.404 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8GZ9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_