HEADER TRANSFERASE 26-SEP-22 8GZE TITLE CRYSTAL STRUCTURE OF HUMAN METTL9-SAH-SLC39A7 PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-L-HISTIDINE N-PROS-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DORA REVERSE STRAND PROTEIN,DREV,DREV1,METHYLTRANSFERASE- COMPND 5 LIKE PROTEIN 9,HMETTL9; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ZINC TRANSPORTER SLC39A7; COMPND 10 CHAIN: E, D; COMPND 11 SYNONYM: HISTIDINE-RICH MEMBRANE PROTEIN KE4,REALLY INTERESTING NEW COMPND 12 GENE 5 PROTEIN,SOLUTE CARRIER FAMILY 39 MEMBER 7,ZRT-,IRT-LIKE COMPND 13 PROTEIN 7,ZIP7; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL9, DREV, CGI-81; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS DREV DOMAIN, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.T.ZHAO,H.T.LI REVDAT 3 13-DEC-23 8GZE 1 JRNL REVDAT 2 30-AUG-23 8GZE 1 REMARK REVDAT 1 31-MAY-23 8GZE 0 JRNL AUTH W.ZHAO,Y.ZHOU,C.LI,Y.BI,K.WANG,M.YE,H.LI JRNL TITL MOLECULAR BASIS FOR PROTEIN HISTIDINE N1-SPECIFIC JRNL TITL 2 METHYLATION OF THE "HIS-X-HIS" MOTIFS BY METTL9. JRNL REF CELL INSIGHT V. 2 00090 2023 JRNL REFN ISSN 2772-8927 JRNL PMID 37398635 JRNL DOI 10.1016/J.CELLIN.2023.100090 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 11178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.2800 - 6.6800 0.99 1427 169 0.2207 0.2349 REMARK 3 2 6.6700 - 5.3500 0.95 1275 139 0.2777 0.3809 REMARK 3 3 5.3500 - 4.6900 0.95 1260 134 0.2389 0.2820 REMARK 3 4 4.6900 - 4.2700 0.95 1249 116 0.2476 0.3099 REMARK 3 5 4.2700 - 3.9700 0.97 1244 122 0.2587 0.3152 REMARK 3 6 3.9700 - 3.7400 0.95 1226 133 0.2854 0.3309 REMARK 3 7 3.7300 - 3.5500 0.96 1222 139 0.2791 0.3600 REMARK 3 8 3.5500 - 3.4000 0.94 1198 125 0.2998 0.3375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4591 REMARK 3 ANGLE : 0.775 6226 REMARK 3 CHIRALITY : 0.048 674 REMARK 3 PLANARITY : 0.005 788 REMARK 3 DIHEDRAL : 24.106 610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4763 -10.6580 -1.9257 REMARK 3 T TENSOR REMARK 3 T11: 0.7138 T22: 0.6390 REMARK 3 T33: 0.4785 T12: 0.0819 REMARK 3 T13: -0.0004 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.3171 L22: 0.9721 REMARK 3 L33: 1.5464 L12: -0.6174 REMARK 3 L13: 0.5645 L23: -1.2637 REMARK 3 S TENSOR REMARK 3 S11: -0.2308 S12: -0.3110 S13: 0.5974 REMARK 3 S21: 0.5382 S22: -0.0475 S23: -0.0200 REMARK 3 S31: 0.1306 S32: 0.2252 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7766 -28.2483 -24.3769 REMARK 3 T TENSOR REMARK 3 T11: 0.8606 T22: 0.5326 REMARK 3 T33: 0.9900 T12: -0.0154 REMARK 3 T13: 0.1653 T23: 0.1026 REMARK 3 L TENSOR REMARK 3 L11: 1.1573 L22: 0.0061 REMARK 3 L33: 0.0135 L12: 0.1193 REMARK 3 L13: 0.1812 L23: -0.0180 REMARK 3 S TENSOR REMARK 3 S11: -0.3849 S12: 0.7347 S13: -0.0365 REMARK 3 S21: -0.3134 S22: 0.6611 S23: -1.0276 REMARK 3 S31: 0.0229 S32: 0.2985 S33: -0.0092 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3339 -17.7412 -20.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.7958 T22: 0.6004 REMARK 3 T33: 0.3281 T12: -0.1719 REMARK 3 T13: 0.1679 T23: 0.0821 REMARK 3 L TENSOR REMARK 3 L11: 0.7794 L22: 0.3340 REMARK 3 L33: 0.3779 L12: -0.3086 REMARK 3 L13: 0.2693 L23: 0.1480 REMARK 3 S TENSOR REMARK 3 S11: -0.4270 S12: 0.0433 S13: -0.0622 REMARK 3 S21: -0.6706 S22: 0.0241 S23: -0.6984 REMARK 3 S31: -0.1438 S32: 0.0584 S33: -0.0385 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3088 -2.9118 -22.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.7963 T22: 0.4602 REMARK 3 T33: 0.6124 T12: -0.0434 REMARK 3 T13: 0.0299 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 0.9739 L22: 1.4675 REMARK 3 L33: 1.2305 L12: -0.5290 REMARK 3 L13: -0.3227 L23: -1.1319 REMARK 3 S TENSOR REMARK 3 S11: -0.3301 S12: 0.3500 S13: 0.1826 REMARK 3 S21: -0.2319 S22: 0.1912 S23: 0.4052 REMARK 3 S31: 0.1101 S32: 0.0568 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3332 -11.7512 -18.4421 REMARK 3 T TENSOR REMARK 3 T11: 0.6251 T22: 0.5871 REMARK 3 T33: 0.6302 T12: -0.0794 REMARK 3 T13: 0.0959 T23: 0.1626 REMARK 3 L TENSOR REMARK 3 L11: 1.7658 L22: 0.3502 REMARK 3 L33: 1.3298 L12: -0.7218 REMARK 3 L13: 0.6569 L23: -0.0156 REMARK 3 S TENSOR REMARK 3 S11: 0.2759 S12: -0.4133 S13: -0.1794 REMARK 3 S21: -0.0657 S22: -0.3046 S23: 0.0312 REMARK 3 S31: -0.1078 S32: -0.4317 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0867 -16.2851 -10.1022 REMARK 3 T TENSOR REMARK 3 T11: 0.6676 T22: 0.6458 REMARK 3 T33: 0.5375 T12: 0.0885 REMARK 3 T13: 0.0111 T23: 0.0786 REMARK 3 L TENSOR REMARK 3 L11: 0.3756 L22: 1.6207 REMARK 3 L33: 1.3489 L12: -0.7015 REMARK 3 L13: 0.4173 L23: 0.3904 REMARK 3 S TENSOR REMARK 3 S11: -0.2779 S12: 0.0917 S13: -0.2093 REMARK 3 S21: -0.3369 S22: 0.3202 S23: 0.2880 REMARK 3 S31: -0.1184 S32: 0.3266 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0032 -16.4824 -9.8843 REMARK 3 T TENSOR REMARK 3 T11: 0.8165 T22: 0.2788 REMARK 3 T33: -0.0361 T12: -0.0663 REMARK 3 T13: 0.1479 T23: 0.5020 REMARK 3 L TENSOR REMARK 3 L11: 5.6379 L22: 3.9063 REMARK 3 L33: 1.6360 L12: -1.0864 REMARK 3 L13: -0.8721 L23: 0.5141 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: 0.7921 S13: -1.4558 REMARK 3 S21: 0.0074 S22: -0.6734 S23: 1.2753 REMARK 3 S31: -0.8270 S32: -0.4102 S33: -2.5410 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2877 -7.4172 6.6598 REMARK 3 T TENSOR REMARK 3 T11: 0.8788 T22: 0.5107 REMARK 3 T33: 0.8638 T12: -0.0914 REMARK 3 T13: 0.2133 T23: 0.0751 REMARK 3 L TENSOR REMARK 3 L11: 1.7609 L22: 1.7852 REMARK 3 L33: 1.3957 L12: -0.9599 REMARK 3 L13: 1.5749 L23: -0.7313 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.2666 S13: 0.5475 REMARK 3 S21: 0.0121 S22: -0.0011 S23: -0.1010 REMARK 3 S31: 0.3922 S32: 0.4296 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1187 -20.9674 -20.9827 REMARK 3 T TENSOR REMARK 3 T11: 1.4179 T22: 0.7554 REMARK 3 T33: 0.8501 T12: 0.0913 REMARK 3 T13: 0.1557 T23: -0.1371 REMARK 3 L TENSOR REMARK 3 L11: 7.5323 L22: 1.5616 REMARK 3 L33: 0.9136 L12: 1.5025 REMARK 3 L13: 2.5974 L23: 0.4805 REMARK 3 S TENSOR REMARK 3 S11: 1.4265 S12: 1.1974 S13: -1.3297 REMARK 3 S21: -0.7195 S22: 0.3696 S23: 0.1356 REMARK 3 S31: -1.3726 S32: -0.1881 S33: 0.3598 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7634 -18.4817 3.1139 REMARK 3 T TENSOR REMARK 3 T11: 0.5399 T22: 0.6364 REMARK 3 T33: 0.7572 T12: -0.0752 REMARK 3 T13: 0.0444 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 1.6406 L22: 1.0835 REMARK 3 L33: 1.2250 L12: -0.2074 REMARK 3 L13: -1.3334 L23: -0.0826 REMARK 3 S TENSOR REMARK 3 S11: 0.5499 S12: -0.8946 S13: -0.0375 REMARK 3 S21: 0.4836 S22: -0.1962 S23: -0.2955 REMARK 3 S31: 0.8679 S32: -1.1481 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1438 -28.2885 4.7625 REMARK 3 T TENSOR REMARK 3 T11: 0.6688 T22: 0.6295 REMARK 3 T33: 0.6950 T12: -0.0870 REMARK 3 T13: -0.0719 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.6336 L22: 1.0760 REMARK 3 L33: 0.5454 L12: -0.0388 REMARK 3 L13: 0.0561 L23: 0.7030 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: 0.3591 S13: 0.2564 REMARK 3 S21: 0.5927 S22: 0.2579 S23: -0.0164 REMARK 3 S31: 0.5122 S32: 0.5325 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.1852 -27.9876 9.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.6689 T22: 0.6138 REMARK 3 T33: 0.9252 T12: -0.0162 REMARK 3 T13: 0.0339 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.1490 L22: 1.9944 REMARK 3 L33: 1.3936 L12: -0.6265 REMARK 3 L13: -0.9287 L23: -0.8321 REMARK 3 S TENSOR REMARK 3 S11: -0.1666 S12: 0.2844 S13: -0.1743 REMARK 3 S21: 0.0044 S22: -0.0518 S23: -0.0960 REMARK 3 S31: -0.2901 S32: 0.3253 S33: -0.0002 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 254 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1937 -25.7758 11.4786 REMARK 3 T TENSOR REMARK 3 T11: 0.8080 T22: 0.6944 REMARK 3 T33: 0.7746 T12: 0.1063 REMARK 3 T13: 0.2007 T23: 0.1142 REMARK 3 L TENSOR REMARK 3 L11: 0.5945 L22: 0.5947 REMARK 3 L33: 0.3984 L12: 0.6715 REMARK 3 L13: 0.1332 L23: -0.2131 REMARK 3 S TENSOR REMARK 3 S11: 0.2326 S12: 0.0761 S13: -0.9128 REMARK 3 S21: 0.0780 S22: 0.1751 S23: 1.6905 REMARK 3 S31: 0.2134 S32: -0.4959 S33: -0.0216 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 284 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.3060 -15.8283 5.7930 REMARK 3 T TENSOR REMARK 3 T11: 0.7304 T22: 0.4318 REMARK 3 T33: 0.7112 T12: -0.0453 REMARK 3 T13: 0.1074 T23: 0.1106 REMARK 3 L TENSOR REMARK 3 L11: 1.0091 L22: 1.2666 REMARK 3 L33: 1.3637 L12: 0.5992 REMARK 3 L13: 0.7564 L23: 1.4112 REMARK 3 S TENSOR REMARK 3 S11: 0.2081 S12: 0.0111 S13: 0.2305 REMARK 3 S21: 0.0104 S22: -0.0157 S23: 0.4667 REMARK 3 S31: -0.2455 S32: 0.4339 S33: -0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.4290 -20.7105 -4.3844 REMARK 3 T TENSOR REMARK 3 T11: 0.5480 T22: 0.6063 REMARK 3 T33: 0.9085 T12: -0.1444 REMARK 3 T13: 0.1720 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.9599 L22: 4.9875 REMARK 3 L33: 1.7418 L12: -1.4667 REMARK 3 L13: -1.7358 L23: 2.1990 REMARK 3 S TENSOR REMARK 3 S11: -0.3712 S12: -0.2258 S13: -0.2411 REMARK 3 S21: 1.1635 S22: 1.0636 S23: -0.2600 REMARK 3 S31: 1.3776 S32: -0.1912 S33: 0.1099 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7698 -21.8271 -15.3740 REMARK 3 T TENSOR REMARK 3 T11: 1.0486 T22: -0.0595 REMARK 3 T33: 0.5004 T12: 0.1334 REMARK 3 T13: 0.1252 T23: 0.4251 REMARK 3 L TENSOR REMARK 3 L11: 1.7557 L22: 1.0327 REMARK 3 L33: 3.2955 L12: -1.1592 REMARK 3 L13: -1.5795 L23: 1.7479 REMARK 3 S TENSOR REMARK 3 S11: -0.2370 S12: -0.1210 S13: -0.1162 REMARK 3 S21: -0.3828 S22: 0.1461 S23: -1.1163 REMARK 3 S31: -0.2156 S32: 0.2764 S33: 0.3966 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 04-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300032519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18922 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.96600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7EZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 4000, 500 MM KCL., PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.78833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 281.57667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 211.18250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 351.97083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.39417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 140.78833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 281.57667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 351.97083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 211.18250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 70.39417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 53 REMARK 465 HIS A 54 REMARK 465 VAL A 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 316 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 111 32.64 -152.72 REMARK 500 VAL A 128 -60.49 -109.08 REMARK 500 THR A 146 -164.73 -125.41 REMARK 500 HIS A 147 -65.29 -96.77 REMARK 500 ASN A 198 61.12 -112.94 REMARK 500 CYS A 208 55.72 -109.54 REMARK 500 ASP A 300 -134.16 -114.56 REMARK 500 PHE B 111 33.69 -152.23 REMARK 500 HIS B 147 -60.38 -95.65 REMARK 500 ASN B 198 58.87 -105.85 REMARK 500 CYS B 208 55.97 -109.87 REMARK 500 ASP B 300 -131.76 -113.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 8GZE A 53 318 UNP Q9H1A3 METL9_HUMAN 53 318 DBREF 8GZE B 53 318 UNP Q9H1A3 METL9_HUMAN 53 318 DBREF 8GZE E 1 5 UNP Q92504 S39A7_HUMAN 65 69 DBREF 8GZE D 1 5 UNP Q92504 S39A7_HUMAN 65 69 SEQRES 1 A 266 ASN HIS GLN TRP TYR VAL CYS ASN ARG GLU LYS LEU CYS SEQRES 2 A 266 GLU SER LEU GLN ALA VAL PHE VAL GLN SER TYR LEU ASP SEQRES 3 A 266 GLN GLY THR GLN ILE PHE LEU ASN ASN SER ILE GLU LYS SEQRES 4 A 266 SER GLY TRP LEU PHE ILE GLN LEU TYR HIS SER PHE VAL SEQRES 5 A 266 SER SER VAL PHE SER LEU PHE MET SER ARG THR SER ILE SEQRES 6 A 266 ASN GLY LEU LEU GLY ARG GLY SER MET PHE VAL PHE SER SEQRES 7 A 266 PRO ASP GLN PHE GLN ARG LEU LEU LYS ILE ASN PRO ASP SEQRES 8 A 266 TRP LYS THR HIS ARG LEU LEU ASP LEU GLY ALA GLY ASP SEQRES 9 A 266 GLY GLU VAL THR LYS ILE MET SER PRO HIS PHE GLU GLU SEQRES 10 A 266 ILE TYR ALA THR GLU LEU SER GLU THR MET ILE TRP GLN SEQRES 11 A 266 LEU GLN LYS LYS LYS TYR ARG VAL LEU GLY ILE ASN GLU SEQRES 12 A 266 TRP GLN ASN THR GLY PHE GLN TYR ASP VAL ILE SER CYS SEQRES 13 A 266 LEU ASN LEU LEU ASP ARG CYS ASP GLN PRO LEU THR LEU SEQRES 14 A 266 LEU LYS ASP ILE ARG SER VAL LEU GLU PRO THR ARG GLY SEQRES 15 A 266 ARG VAL ILE LEU ALA LEU VAL LEU PRO PHE HIS PRO TYR SEQRES 16 A 266 VAL GLU ASN VAL GLY GLY LYS TRP GLU LYS PRO SER GLU SEQRES 17 A 266 ILE LEU GLU ILE LYS GLY GLN ASN TRP GLU GLU GLN VAL SEQRES 18 A 266 ASN SER LEU PRO GLU VAL PHE ARG LYS ALA GLY PHE VAL SEQRES 19 A 266 ILE GLU ALA PHE THR ARG LEU PRO TYR LEU CYS GLU GLY SEQRES 20 A 266 ASP MET TYR ASN ASP TYR TYR VAL LEU ASP ASP ALA VAL SEQRES 21 A 266 PHE VAL LEU LYS PRO VAL SEQRES 1 B 266 ASN HIS GLN TRP TYR VAL CYS ASN ARG GLU LYS LEU CYS SEQRES 2 B 266 GLU SER LEU GLN ALA VAL PHE VAL GLN SER TYR LEU ASP SEQRES 3 B 266 GLN GLY THR GLN ILE PHE LEU ASN ASN SER ILE GLU LYS SEQRES 4 B 266 SER GLY TRP LEU PHE ILE GLN LEU TYR HIS SER PHE VAL SEQRES 5 B 266 SER SER VAL PHE SER LEU PHE MET SER ARG THR SER ILE SEQRES 6 B 266 ASN GLY LEU LEU GLY ARG GLY SER MET PHE VAL PHE SER SEQRES 7 B 266 PRO ASP GLN PHE GLN ARG LEU LEU LYS ILE ASN PRO ASP SEQRES 8 B 266 TRP LYS THR HIS ARG LEU LEU ASP LEU GLY ALA GLY ASP SEQRES 9 B 266 GLY GLU VAL THR LYS ILE MET SER PRO HIS PHE GLU GLU SEQRES 10 B 266 ILE TYR ALA THR GLU LEU SER GLU THR MET ILE TRP GLN SEQRES 11 B 266 LEU GLN LYS LYS LYS TYR ARG VAL LEU GLY ILE ASN GLU SEQRES 12 B 266 TRP GLN ASN THR GLY PHE GLN TYR ASP VAL ILE SER CYS SEQRES 13 B 266 LEU ASN LEU LEU ASP ARG CYS ASP GLN PRO LEU THR LEU SEQRES 14 B 266 LEU LYS ASP ILE ARG SER VAL LEU GLU PRO THR ARG GLY SEQRES 15 B 266 ARG VAL ILE LEU ALA LEU VAL LEU PRO PHE HIS PRO TYR SEQRES 16 B 266 VAL GLU ASN VAL GLY GLY LYS TRP GLU LYS PRO SER GLU SEQRES 17 B 266 ILE LEU GLU ILE LYS GLY GLN ASN TRP GLU GLU GLN VAL SEQRES 18 B 266 ASN SER LEU PRO GLU VAL PHE ARG LYS ALA GLY PHE VAL SEQRES 19 B 266 ILE GLU ALA PHE THR ARG LEU PRO TYR LEU CYS GLU GLY SEQRES 20 B 266 ASP MET TYR ASN ASP TYR TYR VAL LEU ASP ASP ALA VAL SEQRES 21 B 266 PHE VAL LEU LYS PRO VAL SEQRES 1 E 5 GLY HIS THR HIS GLU SEQRES 1 D 5 GLY HIS THR HIS GLU HET SAH A 401 26 HET SAH B 401 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 5 SAH 2(C14 H20 N6 O5 S) HELIX 1 AA1 ASN A 60 LEU A 64 5 5 HELIX 2 AA2 CYS A 65 VAL A 71 1 7 HELIX 3 AA3 ASP A 78 SER A 92 1 15 HELIX 4 AA4 TRP A 94 LEU A 110 1 17 HELIX 5 AA5 SER A 113 GLY A 122 1 10 HELIX 6 AA6 SER A 130 LYS A 139 1 10 HELIX 7 AA7 GLY A 157 SER A 164 1 8 HELIX 8 AA8 SER A 176 LYS A 186 1 11 HELIX 9 AA9 GLN A 217 VAL A 228 1 12 HELIX 10 AB1 ASN A 268 GLY A 284 1 17 HELIX 11 AB2 ASN B 53 TYR B 57 5 5 HELIX 12 AB3 ASN B 60 LEU B 64 5 5 HELIX 13 AB4 CYS B 65 VAL B 71 1 7 HELIX 14 AB5 ASP B 78 SER B 92 1 15 HELIX 15 AB6 TRP B 94 LEU B 110 1 17 HELIX 16 AB7 SER B 113 LEU B 121 1 9 HELIX 17 AB8 SER B 130 LYS B 139 1 10 HELIX 18 AB9 VAL B 159 SER B 164 1 6 HELIX 19 AC1 SER B 176 LYS B 186 1 11 HELIX 20 AC2 GLN B 217 VAL B 228 1 12 HELIX 21 AC3 ASN B 268 GLY B 284 1 17 SHEET 1 AA1 8 PHE A 72 VAL A 73 0 SHEET 2 AA1 8 VAL A 286 PRO A 294 1 O PHE A 290 N VAL A 73 SHEET 3 AA1 8 ASP A 309 LYS A 316 -1 O VAL A 314 N ALA A 289 SHEET 4 AA1 8 ARG A 235 VAL A 241 -1 N LEU A 238 O PHE A 313 SHEET 5 AA1 8 VAL A 205 LEU A 209 1 N ILE A 206 O ARG A 235 SHEET 6 AA1 8 THR A 146 LEU A 152 1 N LEU A 150 O SER A 207 SHEET 7 AA1 8 PHE A 167 THR A 173 1 O TYR A 171 N LEU A 149 SHEET 8 AA1 8 ARG A 189 LEU A 191 1 O LEU A 191 N ALA A 172 SHEET 1 AA2 3 MET A 126 PHE A 127 0 SHEET 2 AA2 3 LEU A 296 GLU A 298 -1 O LEU A 296 N PHE A 127 SHEET 3 AA2 3 TYR A 305 TYR A 306 -1 O TYR A 306 N CYS A 297 SHEET 1 AA3 3 PHE B 72 VAL B 73 0 SHEET 2 AA3 3 PHE B 285 GLU B 298 1 O PHE B 290 N VAL B 73 SHEET 3 AA3 3 MET B 126 PHE B 127 -1 N PHE B 127 O LEU B 296 SHEET 1 AA4 8 PHE B 72 VAL B 73 0 SHEET 2 AA4 8 PHE B 285 GLU B 298 1 O PHE B 290 N VAL B 73 SHEET 3 AA4 8 TYR B 305 PRO B 317 -1 O LEU B 308 N TYR B 295 SHEET 4 AA4 8 ARG B 235 VAL B 241 -1 N LEU B 238 O PHE B 313 SHEET 5 AA4 8 VAL B 205 LEU B 209 1 N ILE B 206 O ILE B 237 SHEET 6 AA4 8 THR B 146 LEU B 152 1 N LEU B 150 O SER B 207 SHEET 7 AA4 8 PHE B 167 THR B 173 1 O GLU B 169 N HIS B 147 SHEET 8 AA4 8 ARG B 189 VAL B 190 1 O ARG B 189 N ILE B 170 CISPEP 1 LEU A 242 PRO A 243 0 15.93 CISPEP 2 LEU B 242 PRO B 243 0 14.91 CRYST1 79.182 79.182 422.365 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012629 0.007291 0.000000 0.00000 SCALE2 0.000000 0.014583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002368 0.00000