HEADER HYDROLASE 28-SEP-22 8H0D
TITLE STRUCTURE OF THE THERMOLABILE HEMOLYSIN FROM VIBRIO ALGINOLYTICUS (IN
TITLE 2 COMPLEX WITH DOCOSAHEXAENOIC ACID)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SGNH/GDSL HYDROLASE FAMILY PROTEIN;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: THERMOLABILE HEMOLYSIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO ALGINOLYTICUS;
SOURCE 3 ORGANISM_TAXID: 663;
SOURCE 4 ATCC: 17749;
SOURCE 5 GENE: F0254_14065;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM13
KEYWDS VIBRIO, PHOSPHOLIPASE, SGNH HYDROLASE, GDSL LIPASE, TRANSFERASE,
KEYWDS 2 THERMOLABILE HEMOLYSIN, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Q.MA,C.WANG
REVDAT 2 06-NOV-24 8H0D 1 REMARK
REVDAT 1 16-AUG-23 8H0D 0
JRNL AUTH C.WANG,C.LIU,X.ZHU,Q.PENG,Q.MA
JRNL TITL CATALYTIC SITE FLEXIBILITY FACILITATES THE SUBSTRATE AND
JRNL TITL 2 CATALYTIC PROMISCUITY OF VIBRIO DUAL LIPASE/TRANSFERASE.
JRNL REF NAT COMMUN V. 14 4795 2023
JRNL REFN ESSN 2041-1723
JRNL PMID 37558668
JRNL DOI 10.1038/S41467-023-40455-Y
REMARK 2
REMARK 2 RESOLUTION. 2.01 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.78
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 50957
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.193
REMARK 3 R VALUE (WORKING SET) : 0.191
REMARK 3 FREE R VALUE : 0.225
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960
REMARK 3 FREE R VALUE TEST SET COUNT : 2527
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.06
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3754
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2160
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3580
REMARK 3 BIN R VALUE (WORKING SET) : 0.2150
REMARK 3 BIN FREE R VALUE : 0.2350
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.64
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 174
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 6242
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 51
REMARK 3 SOLVENT ATOMS : 154
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.97
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 8.04060
REMARK 3 B22 (A**2) : -10.98440
REMARK 3 B33 (A**2) : 2.94370
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.29340
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.187
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.156
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.194
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.161
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 6471 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 8798 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 2166 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 185 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 950 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 6471 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 830 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 7614 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.00
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.25
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.69
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|29 - A|418 }
REMARK 3 ORIGIN FOR THE GROUP (A): -3.5035 -2.6681 -14.3947
REMARK 3 T TENSOR
REMARK 3 T11: -0.2878 T22: -0.3336
REMARK 3 T33: -0.3631 T12: 0.0309
REMARK 3 T13: -0.0426 T23: -0.0684
REMARK 3 L TENSOR
REMARK 3 L11: 1.8182 L22: 1.3429
REMARK 3 L33: 1.6522 L12: -0.2234
REMARK 3 L13: 0.3745 L23: -0.7462
REMARK 3 S TENSOR
REMARK 3 S11: -0.2615 S12: 0.0461 S13: 0.0410
REMARK 3 S21: 0.3565 S22: 0.1423 S23: -0.0850
REMARK 3 S31: -0.1874 S32: 0.0419 S33: 0.1193
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|30 - B|416 }
REMARK 3 ORIGIN FOR THE GROUP (A): -23.3855 -32.9863 -25.8740
REMARK 3 T TENSOR
REMARK 3 T11: -0.3978 T22: -0.2462
REMARK 3 T33: -0.3563 T12: 0.0206
REMARK 3 T13: -0.0443 T23: -0.0023
REMARK 3 L TENSOR
REMARK 3 L11: 1.7052 L22: 0.8482
REMARK 3 L33: 2.1113 L12: 0.4709
REMARK 3 L13: 0.0987 L23: -0.2971
REMARK 3 S TENSOR
REMARK 3 S11: 0.0517 S12: -0.1864 S13: -0.2308
REMARK 3 S21: 0.1657 S22: -0.1114 S23: -0.1273
REMARK 3 S31: -0.1431 S32: -0.1610 S33: 0.0597
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8H0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 05-OCT-22.
REMARK 100 THE DEPOSITION ID IS D_1300032533.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 06-OCT-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL19U1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022, BUILT ON
REMARK 200 20220220
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51148
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.008
REMARK 200 RESOLUTION RANGE LOW (A) : 81.779
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 6.700
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.07600
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.85000
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.7.17
REMARK 200 STARTING MODEL: 6JKZ
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 38.56
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTAL OF VALTLH IN COMPLEX WITH
REMARK 280 DOCOSAHEXAENOIC ACID WAS GROWN IN A DROP CONTAINING 1.0 UL OF
REMARK 280 PROTEIN SOLUTION (6 MG/ML IN THE BUFFER 10 MM HEPES PH 7.5, 150
REMARK 280 MM NACL, 1 MM DTT, 300MM NDSB201 WITH 1.25 MM DOCOSAHEXAENOIC
REMARK 280 ACID) AND 1.0 UL OF RESERVOIR SOLUTION (25% POLYETHYLENE GLYCOL
REMARK 280 20000, 0.15 M MAGNESIUM FORMATE)., VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.06500
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -1
REMARK 465 GLY A 0
REMARK 465 MET A 1
REMARK 465 MET A 2
REMARK 465 LYS A 3
REMARK 465 LYS A 4
REMARK 465 THR A 5
REMARK 465 ILE A 6
REMARK 465 THR A 7
REMARK 465 LEU A 8
REMARK 465 LEU A 9
REMARK 465 THR A 10
REMARK 465 ALA A 11
REMARK 465 LEU A 12
REMARK 465 LEU A 13
REMARK 465 PRO A 14
REMARK 465 LEU A 15
REMARK 465 ALA A 16
REMARK 465 SER A 17
REMARK 465 ALA A 18
REMARK 465 ILE A 19
REMARK 465 ALA A 20
REMARK 465 GLU A 21
REMARK 465 GLU A 22
REMARK 465 PRO A 23
REMARK 465 THR A 24
REMARK 465 LEU A 25
REMARK 465 SER A 26
REMARK 465 PRO A 27
REMARK 465 ALA A 28
REMARK 465 HIS A 419
REMARK 465 HIS A 420
REMARK 465 HIS A 421
REMARK 465 HIS A 422
REMARK 465 HIS A 423
REMARK 465 HIS A 424
REMARK 465 MET B -1
REMARK 465 GLY B 0
REMARK 465 MET B 1
REMARK 465 MET B 2
REMARK 465 LYS B 3
REMARK 465 LYS B 4
REMARK 465 THR B 5
REMARK 465 ILE B 6
REMARK 465 THR B 7
REMARK 465 LEU B 8
REMARK 465 LEU B 9
REMARK 465 THR B 10
REMARK 465 ALA B 11
REMARK 465 LEU B 12
REMARK 465 LEU B 13
REMARK 465 PRO B 14
REMARK 465 LEU B 15
REMARK 465 ALA B 16
REMARK 465 SER B 17
REMARK 465 ALA B 18
REMARK 465 ILE B 19
REMARK 465 ALA B 20
REMARK 465 GLU B 21
REMARK 465 GLU B 22
REMARK 465 PRO B 23
REMARK 465 THR B 24
REMARK 465 LEU B 25
REMARK 465 SER B 26
REMARK 465 PRO B 27
REMARK 465 ALA B 28
REMARK 465 MET B 29
REMARK 465 ARG B 417
REMARK 465 PHE B 418
REMARK 465 HIS B 419
REMARK 465 HIS B 420
REMARK 465 HIS B 421
REMARK 465 HIS B 422
REMARK 465 HIS B 423
REMARK 465 HIS B 424
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 84 -154.47 -80.08
REMARK 500 ALA A 111 54.64 -112.58
REMARK 500 ASP A 152 -151.02 -121.32
REMARK 500 LEU A 176 67.28 31.59
REMARK 500 SER A 180 -179.02 -170.25
REMARK 500 ASP A 286 93.81 -70.00
REMARK 500 ASP A 390 -164.70 -121.45
REMARK 500 LEU A 413 63.68 64.82
REMARK 500 ASP B 152 -149.48 -122.71
REMARK 500 LEU B 176 68.45 29.48
REMARK 500 ILE B 212 -50.84 72.29
REMARK 500 LEU B 214 97.88 -68.09
REMARK 500 ASP B 390 -164.19 -120.58
REMARK 500 LEU B 413 73.06 50.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 503 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU B 208 OE2
REMARK 620 2 ASP B 263 OD1 95.2
REMARK 620 3 HOH B 643 O 83.8 78.9
REMARK 620 4 HOH B 654 O 89.5 95.0 170.4
REMARK 620 5 HOH B 662 O 169.3 88.8 87.3 100.0
REMARK 620 N 1 2 3 4
DBREF1 8H0D A 1 418 UNP A0A7Y4B3E8_VIBAL
DBREF2 8H0D A A0A7Y4B3E8 1 418
DBREF1 8H0D B 1 418 UNP A0A7Y4B3E8_VIBAL
DBREF2 8H0D B A0A7Y4B3E8 1 418
SEQADV 8H0D MET A -1 UNP A0A7Y4B3E INITIATING METHIONINE
SEQADV 8H0D GLY A 0 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS A 419 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS A 420 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS A 421 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS A 422 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS A 423 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS A 424 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D MET B -1 UNP A0A7Y4B3E INITIATING METHIONINE
SEQADV 8H0D GLY B 0 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS B 419 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS B 420 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS B 421 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS B 422 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS B 423 UNP A0A7Y4B3E EXPRESSION TAG
SEQADV 8H0D HIS B 424 UNP A0A7Y4B3E EXPRESSION TAG
SEQRES 1 A 426 MET GLY MET MET LYS LYS THR ILE THR LEU LEU THR ALA
SEQRES 2 A 426 LEU LEU PRO LEU ALA SER ALA ILE ALA GLU GLU PRO THR
SEQRES 3 A 426 LEU SER PRO ALA MET VAL SER ALA ALA GLU VAL VAL SER
SEQRES 4 A 426 ALA GLN GLU ASN GLN THR TYR THR TYR VAL ARG CYS TRP
SEQRES 5 A 426 TYR ARG THR SER HIS SER LYS ASP ASP ALA ALA THR ASP
SEQRES 6 A 426 TRP LYS TRP ALA LYS ASN GLN ASP GLY SER ASP PHE THR
SEQRES 7 A 426 ILE ASP GLY TYR TRP TRP SER SER VAL SER PHE LYS ASN
SEQRES 8 A 426 MET PHE TYR THR ASN THR SER GLN ASN VAL ILE ARG GLN
SEQRES 9 A 426 ARG CYS GLU GLU THR LEU ASP LEU ALA ASN GLU ASN ALA
SEQRES 10 A 426 ASP ILE THR PHE PHE ALA ALA ASP ASN ARG TYR SER TYR
SEQRES 11 A 426 ASN HIS THR ILE TRP SER ASN ASP ALA ALA MET GLN PRO
SEQRES 12 A 426 ASP GLN ILE ASN LYS VAL VAL ALA LEU GLY ASP SER LEU
SEQRES 13 A 426 SER ASP THR GLY ASN ILE PHE ASN ALA SER GLN TRP ARG
SEQRES 14 A 426 PHE PRO ASN PRO ASN SER TRP PHE LEU GLY HIS PHE SER
SEQRES 15 A 426 ASN GLY PHE VAL TRP THR GLU TYR VAL ALA LYS ALA LYS
SEQRES 16 A 426 ASN LEU PRO LEU TYR ASN TRP ALA VAL GLY GLY ALA ALA
SEQRES 17 A 426 GLY GLU ASN GLN TYR ILE ALA LEU THR GLY VAL GLY GLU
SEQRES 18 A 426 GLN VAL SER SER TYR LEU THR TYR THR LYS LEU ALA LYS
SEQRES 19 A 426 ASN TYR ASN PRO ALA ASN THR LEU PHE THR LEU GLU PHE
SEQRES 20 A 426 GLY LEU ASN ASP PHE MET ASN TYR ASN ARG SER VAL PRO
SEQRES 21 A 426 GLU VAL LYS ALA ASP TYR ALA GLU ALA LEU ILE ARG LEU
SEQRES 22 A 426 THR ASP ALA GLY ALA LYS ASN PHE MET LEU MET THR LEU
SEQRES 23 A 426 PRO ASP ALA THR LYS ALA PRO GLN PHE LYS TYR SER THR
SEQRES 24 A 426 GLN GLU GLU ILE GLU THR ILE ARG ALA LYS VAL LEU LYS
SEQRES 25 A 426 MET ASN GLU PHE ILE LYS ALA GLN ALA MET TYR TYR LYS
SEQRES 26 A 426 ALA GLN GLY TYR ASN ILE ALA LEU PHE ASP THR HIS ALA
SEQRES 27 A 426 LEU PHE GLU LYS LEU THR SER ALA PRO GLU GLU HIS GLY
SEQRES 28 A 426 PHE VAL ASN ALA SER ASP PRO CYS LEU ASP ILE ASN ARG
SEQRES 29 A 426 SER SER SER VAL ASP TYR MET TYR THR HIS SER LEU ARG
SEQRES 30 A 426 SER GLU CYS ALA ALA SER GLY ALA ASP LYS PHE VAL PHE
SEQRES 31 A 426 TRP ASP VAL THR HIS PRO THR THR ALA THR HIS ARG TYR
SEQRES 32 A 426 VAL ALA GLU LYS MET LEU GLU SER SER ASN ASN LEU GLU
SEQRES 33 A 426 GLU PHE ARG PHE HIS HIS HIS HIS HIS HIS
SEQRES 1 B 426 MET GLY MET MET LYS LYS THR ILE THR LEU LEU THR ALA
SEQRES 2 B 426 LEU LEU PRO LEU ALA SER ALA ILE ALA GLU GLU PRO THR
SEQRES 3 B 426 LEU SER PRO ALA MET VAL SER ALA ALA GLU VAL VAL SER
SEQRES 4 B 426 ALA GLN GLU ASN GLN THR TYR THR TYR VAL ARG CYS TRP
SEQRES 5 B 426 TYR ARG THR SER HIS SER LYS ASP ASP ALA ALA THR ASP
SEQRES 6 B 426 TRP LYS TRP ALA LYS ASN GLN ASP GLY SER ASP PHE THR
SEQRES 7 B 426 ILE ASP GLY TYR TRP TRP SER SER VAL SER PHE LYS ASN
SEQRES 8 B 426 MET PHE TYR THR ASN THR SER GLN ASN VAL ILE ARG GLN
SEQRES 9 B 426 ARG CYS GLU GLU THR LEU ASP LEU ALA ASN GLU ASN ALA
SEQRES 10 B 426 ASP ILE THR PHE PHE ALA ALA ASP ASN ARG TYR SER TYR
SEQRES 11 B 426 ASN HIS THR ILE TRP SER ASN ASP ALA ALA MET GLN PRO
SEQRES 12 B 426 ASP GLN ILE ASN LYS VAL VAL ALA LEU GLY ASP SER LEU
SEQRES 13 B 426 SER ASP THR GLY ASN ILE PHE ASN ALA SER GLN TRP ARG
SEQRES 14 B 426 PHE PRO ASN PRO ASN SER TRP PHE LEU GLY HIS PHE SER
SEQRES 15 B 426 ASN GLY PHE VAL TRP THR GLU TYR VAL ALA LYS ALA LYS
SEQRES 16 B 426 ASN LEU PRO LEU TYR ASN TRP ALA VAL GLY GLY ALA ALA
SEQRES 17 B 426 GLY GLU ASN GLN TYR ILE ALA LEU THR GLY VAL GLY GLU
SEQRES 18 B 426 GLN VAL SER SER TYR LEU THR TYR THR LYS LEU ALA LYS
SEQRES 19 B 426 ASN TYR ASN PRO ALA ASN THR LEU PHE THR LEU GLU PHE
SEQRES 20 B 426 GLY LEU ASN ASP PHE MET ASN TYR ASN ARG SER VAL PRO
SEQRES 21 B 426 GLU VAL LYS ALA ASP TYR ALA GLU ALA LEU ILE ARG LEU
SEQRES 22 B 426 THR ASP ALA GLY ALA LYS ASN PHE MET LEU MET THR LEU
SEQRES 23 B 426 PRO ASP ALA THR LYS ALA PRO GLN PHE LYS TYR SER THR
SEQRES 24 B 426 GLN GLU GLU ILE GLU THR ILE ARG ALA LYS VAL LEU LYS
SEQRES 25 B 426 MET ASN GLU PHE ILE LYS ALA GLN ALA MET TYR TYR LYS
SEQRES 26 B 426 ALA GLN GLY TYR ASN ILE ALA LEU PHE ASP THR HIS ALA
SEQRES 27 B 426 LEU PHE GLU LYS LEU THR SER ALA PRO GLU GLU HIS GLY
SEQRES 28 B 426 PHE VAL ASN ALA SER ASP PRO CYS LEU ASP ILE ASN ARG
SEQRES 29 B 426 SER SER SER VAL ASP TYR MET TYR THR HIS SER LEU ARG
SEQRES 30 B 426 SER GLU CYS ALA ALA SER GLY ALA ASP LYS PHE VAL PHE
SEQRES 31 B 426 TRP ASP VAL THR HIS PRO THR THR ALA THR HIS ARG TYR
SEQRES 32 B 426 VAL ALA GLU LYS MET LEU GLU SER SER ASN ASN LEU GLU
SEQRES 33 B 426 GLU PHE ARG PHE HIS HIS HIS HIS HIS HIS
HET HXA A 501 24
HET 1PS B 501 13
HET 1PS B 502 13
HET MG B 503 1
HETNAM HXA DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID
HETNAM 1PS 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
HETNAM MG MAGNESIUM ION
HETSYN 1PS 1-(3-SULFOPROPYL) PYRIDINIUM; PPS
FORMUL 3 HXA C22 H32 O2
FORMUL 4 1PS 2(C8 H11 N O3 S)
FORMUL 6 MG MG 2+
FORMUL 7 HOH *154(H2 O)
HELIX 1 AA1 SER A 31 ASN A 41 1 11
HELIX 2 AA2 SER A 96 ASP A 109 1 14
HELIX 3 AA3 VAL A 184 LYS A 193 1 10
HELIX 4 AA4 GLY A 207 TYR A 211 5 5
HELIX 5 AA5 GLY A 216 LYS A 229 1 14
HELIX 6 AA6 ASN A 235 ALA A 237 5 3
HELIX 7 AA7 GLY A 246 TYR A 253 1 8
HELIX 8 AA8 SER A 256 ALA A 274 1 19
HELIX 9 AA9 ASP A 286 SER A 296 5 11
HELIX 10 AB1 THR A 297 GLN A 325 1 29
HELIX 11 AB2 ASP A 333 ALA A 344 1 12
HELIX 12 AB3 PRO A 345 GLY A 349 5 5
HELIX 13 AB4 SER A 364 TYR A 370 5 7
HELIX 14 AB5 ARG A 375 GLY A 382 1 8
HELIX 15 AB6 THR A 395 SER A 410 1 16
HELIX 16 AB7 SER B 31 ASN B 41 1 11
HELIX 17 AB8 SER B 96 ASP B 109 1 14
HELIX 18 AB9 GLY B 158 SER B 164 1 7
HELIX 19 AC1 VAL B 184 LYS B 193 1 10
HELIX 20 AC2 GLY B 216 LEU B 230 1 15
HELIX 21 AC3 ASN B 235 ALA B 237 5 3
HELIX 22 AC4 GLY B 246 ASN B 252 1 7
HELIX 23 AC5 SER B 256 ALA B 274 1 19
HELIX 24 AC6 ASP B 286 SER B 296 5 11
HELIX 25 AC7 THR B 297 GLN B 325 1 29
HELIX 26 AC8 ASP B 333 ALA B 344 1 12
HELIX 27 AC9 PRO B 345 HIS B 348 5 4
HELIX 28 AD1 SER B 364 TYR B 370 5 7
HELIX 29 AD2 ARG B 375 GLY B 382 1 8
HELIX 30 AD3 THR B 395 SER B 409 1 15
SHEET 1 AA1 3 THR A 62 TRP A 66 0
SHEET 2 AA1 3 THR A 43 ARG A 52 -1 N CYS A 49 O LYS A 65
SHEET 3 AA1 3 THR A 118 ALA A 122 -1 O THR A 118 N TRP A 50
SHEET 1 AA2 5 THR A 62 TRP A 66 0
SHEET 2 AA2 5 THR A 43 ARG A 52 -1 N CYS A 49 O LYS A 65
SHEET 3 AA2 5 THR A 76 TRP A 82 -1 O GLY A 79 N THR A 43
SHEET 4 AA2 5 MET A 90 THR A 93 -1 O TYR A 92 N TYR A 80
SHEET 5 AA2 5 ILE A 132 SER A 134 1 O TRP A 133 N PHE A 91
SHEET 1 AA3 5 LEU A 197 ASN A 199 0
SHEET 2 AA3 5 LYS A 146 GLY A 151 1 N VAL A 147 O TYR A 198
SHEET 3 AA3 5 THR A 239 GLU A 244 1 O LEU A 240 N LYS A 146
SHEET 4 AA3 5 ASN A 278 MET A 282 1 O MET A 280 N PHE A 241
SHEET 5 AA3 5 ASN A 328 PHE A 332 1 O ALA A 330 N LEU A 281
SHEET 1 AA4 2 ASN A 352 PRO A 356 0
SHEET 2 AA4 2 PHE A 386 PHE A 388 1 O VAL A 387 N ASN A 352
SHEET 1 AA5 3 THR B 62 TRP B 66 0
SHEET 2 AA5 3 THR B 43 ARG B 52 -1 N CYS B 49 O LYS B 65
SHEET 3 AA5 3 THR B 118 ALA B 122 -1 O THR B 118 N TRP B 50
SHEET 1 AA6 5 THR B 62 TRP B 66 0
SHEET 2 AA6 5 THR B 43 ARG B 52 -1 N CYS B 49 O LYS B 65
SHEET 3 AA6 5 THR B 76 TRP B 81 -1 O GLY B 79 N THR B 43
SHEET 4 AA6 5 MET B 90 THR B 93 -1 O TYR B 92 N TYR B 80
SHEET 5 AA6 5 THR B 131 SER B 134 1 O TRP B 133 N PHE B 91
SHEET 1 AA7 5 LEU B 197 ASN B 199 0
SHEET 2 AA7 5 LYS B 146 GLY B 151 1 N VAL B 147 O TYR B 198
SHEET 3 AA7 5 THR B 239 GLU B 244 1 O LEU B 240 N LYS B 146
SHEET 4 AA7 5 ASN B 278 MET B 282 1 O MET B 280 N PHE B 241
SHEET 5 AA7 5 ASN B 328 PHE B 332 1 O ALA B 330 N LEU B 281
SHEET 1 AA8 2 ASN B 352 PRO B 356 0
SHEET 2 AA8 2 PHE B 386 PHE B 388 1 O VAL B 387 N ASN B 352
SSBOND 1 CYS A 49 CYS A 104 1555 1555 2.05
SSBOND 2 CYS A 357 CYS A 378 1555 1555 2.04
SSBOND 3 CYS B 49 CYS B 104 1555 1555 2.05
SSBOND 4 CYS B 357 CYS B 378 1555 1555 2.02
LINK OE2 GLU B 208 MG MG B 503 1555 1555 2.22
LINK OD1 ASP B 263 MG MG B 503 1555 1555 2.16
LINK MG MG B 503 O HOH B 643 1555 1555 2.21
LINK MG MG B 503 O HOH B 654 1555 1555 2.21
LINK MG MG B 503 O HOH B 662 1555 1555 2.05
CISPEP 1 PHE A 168 PRO A 169 0 -12.48
CISPEP 2 PHE B 168 PRO B 169 0 0.28
CRYST1 65.671 72.130 83.489 90.00 101.61 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015227 0.000000 0.003129 0.00000
SCALE2 0.000000 0.013864 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012228 0.00000