HEADER TRANSFERASE 04-OCT-22 8H20 TITLE SERINE PALMITOYLTRANSFERASE FROM SPHINGOBACTERIUM MULTIVORUM COMPLEXED TITLE 2 WITH GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PALMITOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPT; COMPND 5 EC: 2.3.1.50; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBACTERIUM MULTIVORUM; SOURCE 3 ORGANISM_TAXID: 28454; SOURCE 4 GENE: SPT, I6J33_20140, NCTC11343_02561, SPHINGO8BC_150128; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPHINGOLIPID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MURAKAMI,A.TAKAHASHI,A.KATAYAMA,I.MIYAHARA,N.KAMIYA,H.IKUSHIRO, AUTHOR 2 T.YANO REVDAT 1 16-AUG-23 8H20 0 JRNL AUTH H.IKUSHIRO,T.MURAKAMI,A.TAKAHASHI,A.KATAYAMA,T.SAWAI,H.GOTO, JRNL AUTH 2 S.KOOLATH,Y.MURAI,K.MONDE,I.MIYAHARA,N.KAMIYA,T.YANO JRNL TITL STRUCTURAL INSIGHTS INTO THE SUBSTRATE RECOGNITION OF SERINE JRNL TITL 2 PALMITOYLTRANSFERASE FROM SPHINGOBACTERIUM MULTIVORUM. JRNL REF J.BIOL.CHEM. V. 299 04684 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37030501 JRNL DOI 10.1016/J.JBC.2023.104684 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 72008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.125 REMARK 3 FREE R VALUE TEST SET COUNT : 7291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4654 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 550 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3035 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69500 REMARK 3 B22 (A**2) : 0.69500 REMARK 3 B33 (A**2) : -1.38900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.661 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3313 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3182 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4477 ; 1.894 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7373 ; 1.532 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 432 ; 6.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;32.003 ;23.399 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;14.407 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3792 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 713 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 717 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 118 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1608 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1677 ; 1.652 ; 1.834 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1677 ; 1.652 ; 1.834 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2126 ; 2.176 ; 2.749 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2127 ; 2.176 ; 2.750 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1636 ; 2.734 ; 2.210 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1637 ; 2.733 ; 2.212 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2351 ; 4.141 ; 3.170 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2352 ; 4.140 ; 3.172 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8H20 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300032660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3A2B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM ACETATE, TRIS-HCL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.88700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.78650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.78650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.94350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.78650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.78650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.83050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.78650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.78650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.94350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.78650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.78650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 155.83050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.88700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 61.57300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 61.57300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.88700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 771 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 396 REMARK 465 THR A 397 REMARK 465 LEU A 398 REMARK 465 ILE A 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 289 O1 EDO A 407 2.12 REMARK 500 OD1 ASP A 261 O HOH A 503 2.12 REMARK 500 OD2 ASP A 261 O HOH A 504 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 169 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 36.81 -143.08 REMARK 500 LEU A 84 -98.01 -107.00 REMARK 500 VAL A 217 -62.81 -124.28 REMARK 500 LYS A 244 -101.78 -115.33 REMARK 500 LYS A 244 -107.76 -94.83 REMARK 500 SER A 248 -135.19 -135.55 REMARK 500 SER A 248 -143.76 -138.02 REMARK 500 ARG A 332 31.04 70.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 915 DISTANCE = 8.18 ANGSTROMS DBREF 8H20 A 1 399 UNP A7BFV6 A7BFV6_SPHMU 1 399 SEQRES 1 A 399 MET SER LYS GLY LYS LEU GLY GLU LYS ILE SER GLN PHE SEQRES 2 A 399 LYS ILE VAL GLU GLU LEU LYS ALA LYS GLY LEU TYR ALA SEQRES 3 A 399 TYR PHE ARG PRO ILE GLN SER LYS GLN ASP THR GLU VAL SEQRES 4 A 399 LYS ILE ASP GLY ARG ARG VAL LEU MET PHE GLY SER ASN SEQRES 5 A 399 SER TYR LEU GLY LEU THR THR ASP THR ARG ILE ILE LYS SEQRES 6 A 399 ALA ALA GLN ASP ALA LEU GLU LYS TYR GLY THR GLY CYS SEQRES 7 A 399 ALA GLY SER ARG PHE LEU ASN GLY THR LEU ASP ILE HIS SEQRES 8 A 399 VAL GLU LEU GLU GLU LYS LEU SER ALA TYR VAL GLY LYS SEQRES 9 A 399 GLU ALA ALA ILE LEU PHE SER THR GLY PHE GLN SER ASN SEQRES 10 A 399 LEU GLY PRO LEU SER CYS LEU MET GLY ARG ASN ASP TYR SEQRES 11 A 399 ILE LEU LEU ASP GLU ARG ASP HIS ALA SER ILE ILE ASP SEQRES 12 A 399 GLY SER ARG LEU SER PHE SER LYS VAL ILE LYS TYR GLY SEQRES 13 A 399 HIS ASN ASN MET GLU ASP LEU ARG ALA LYS LEU SER ARG SEQRES 14 A 399 LEU PRO GLU ASP SER ALA LYS LEU ILE CYS THR ASP GLY SEQRES 15 A 399 ILE PHE SER MET GLU GLY ASP ILE VAL ASN LEU PRO GLU SEQRES 16 A 399 LEU THR SER ILE ALA ASN GLU PHE ASP ALA ALA VAL MET SEQRES 17 A 399 VAL ASP ASP ALA HIS SER LEU GLY VAL ILE GLY HIS LYS SEQRES 18 A 399 GLY ALA GLY THR ALA SER HIS PHE GLY LEU ASN ASP ASP SEQRES 19 A 399 VAL ASP LEU ILE MET GLY THR PHE SER LYS SER LEU ALA SEQRES 20 A 399 SER LEU GLY GLY PHE VAL ALA GLY ASP ALA ASP VAL ILE SEQRES 21 A 399 ASP PHE LEU LYS HIS ASN ALA ARG SER VAL MET PHE SER SEQRES 22 A 399 ALA SER MET THR PRO ALA SER VAL ALA SER THR LEU LYS SEQRES 23 A 399 ALA LEU GLU ILE ILE GLN ASN GLU PRO GLU HIS ILE GLU SEQRES 24 A 399 LYS LEU TRP LYS ASN THR ASP TYR ALA LYS ALA GLN LEU SEQRES 25 A 399 LEU ASP HIS GLY PHE ASP LEU GLY ALA THR GLU SER PRO SEQRES 26 A 399 ILE LEU PRO ILE PHE ILE ARG SER ASN GLU LYS THR PHE SEQRES 27 A 399 TRP VAL THR LYS MET LEU GLN ASP ASP GLY VAL PHE VAL SEQRES 28 A 399 ASN PRO VAL VAL SER PRO ALA VAL PRO ALA GLU GLU SER SEQRES 29 A 399 LEU ILE ARG PHE SER LEU MET ALA THR HIS THR TYR ASP SEQRES 30 A 399 GLN ILE ASP GLU ALA ILE GLU LYS MET VAL LYS VAL PHE SEQRES 31 A 399 LYS GLN ALA GLU VAL GLU THR LEU ILE HET PLG A 401 20 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HETNAM PLG N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL- HETNAM 2 PLG PYRIDIN-4-YL-METHANE] HETNAM EDO 1,2-ETHANEDIOL HETSYN PLG N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PLG C10 H15 N2 O7 P FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *415(H2 O) HELIX 1 AA1 LYS A 3 SER A 11 1 9 HELIX 2 AA2 LYS A 14 LYS A 22 1 9 HELIX 3 AA3 GLY A 56 THR A 59 5 4 HELIX 4 AA4 ASP A 60 GLY A 75 1 16 HELIX 5 AA5 LEU A 88 GLY A 103 1 16 HELIX 6 AA6 THR A 112 LEU A 124 1 13 HELIX 7 AA7 HIS A 138 SER A 148 1 11 HELIX 8 AA8 ASN A 159 ARG A 169 1 11 HELIX 9 AA9 ASN A 192 ASP A 204 1 13 HELIX 10 AB1 GLY A 219 ALA A 223 5 5 HELIX 11 AB2 GLY A 224 GLY A 230 1 7 HELIX 12 AB3 LEU A 231 VAL A 235 5 5 HELIX 13 AB4 ASP A 256 HIS A 265 1 10 HELIX 14 AB5 ALA A 267 PHE A 272 1 6 HELIX 15 AB6 THR A 277 GLU A 294 1 18 HELIX 16 AB7 PRO A 295 HIS A 315 1 21 HELIX 17 AB8 SER A 333 ASP A 347 1 15 HELIX 18 AB9 PRO A 360 GLU A 363 5 4 HELIX 19 AC1 THR A 375 GLU A 394 1 20 SHEET 1 AA1 3 GLU A 38 ILE A 41 0 SHEET 2 AA1 3 ARG A 44 MET A 48 -1 O VAL A 46 N VAL A 39 SHEET 3 AA1 3 VAL A 349 PHE A 350 1 O PHE A 350 N LEU A 47 SHEET 1 AA2 7 ALA A 106 PHE A 110 0 SHEET 2 AA2 7 GLY A 251 GLY A 255 -1 O GLY A 251 N PHE A 110 SHEET 3 AA2 7 LEU A 237 THR A 241 -1 N ILE A 238 O ALA A 254 SHEET 4 AA2 7 ALA A 206 ASP A 210 1 N VAL A 209 O MET A 239 SHEET 5 AA2 7 LYS A 176 ASP A 181 1 N ILE A 178 O ALA A 206 SHEET 6 AA2 7 TYR A 130 ASP A 134 1 N LEU A 132 O LEU A 177 SHEET 7 AA2 7 LYS A 151 TYR A 155 1 O ILE A 153 N ILE A 131 SHEET 1 AA3 3 ILE A 326 PHE A 330 0 SHEET 2 AA3 3 LEU A 365 SER A 369 -1 O ILE A 366 N ILE A 329 SHEET 3 AA3 3 ASN A 352 VAL A 354 -1 N VAL A 354 O LEU A 365 CISPEP 1 SER A 356 PRO A 357 0 4.87 CRYST1 61.573 61.573 207.774 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016241 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016241 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004813 0.00000