HEADER CELL INVASION/IMMUNE SYSTEM 15-OCT-22 8H63 TITLE CRYSTAL STRUCTURE OF INTERNALIN A FROM LISTERIA MONOCYTOGENES WITH TITLE 2 NANOBODY VHH10 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VHH10; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES SEROVAR 1/2A; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 STRAIN: ATCC BAA-679 / EGD-E; SOURCE 5 GENE: INLA, LMO0433,INTLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 10 ORGANISM_TAXID: 9844; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS INTERNALIN A CADHERIN BACTERIAL INVASION NANOBODY SURFACE PLASMON KEYWDS 2 RESONANCE ISOTHERMAL TITRATION CALORIMETRY, CELL INVASION, CELL KEYWDS 3 INVASION-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,S.NAGATOISH,K.TSUMOTO REVDAT 2 25-OCT-23 8H63 1 JRNL REVDAT 1 04-OCT-23 8H63 0 JRNL AUTH T.YAMAZAKI,S.NAGATOISHI,T.YAMAWAKI,T.NOZAWA,R.MATSUNAGA, JRNL AUTH 2 M.NAKAKIDO,J.M.M.CAAVEIRO,I.NAKAGAWA,K.TSUMOTO JRNL TITL ANTI-INLA SINGLE-DOMAIN ANTIBODIES THAT INHIBIT THE CELL JRNL TITL 2 INVASION OF LISTERIA MONOCYTOGENES. JRNL REF J.BIOL.CHEM. V. 299 05254 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37716701 JRNL DOI 10.1016/J.JBC.2023.105254 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 89716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2266 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4391 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 763 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4613 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4284 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6336 ; 1.676 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10046 ; 1.501 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 629 ; 7.192 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;44.197 ;26.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 799 ;11.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.126 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 687 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5156 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 781 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8H63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300032880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 33.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 8H62 6JB9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M HEPES SODIUM PH 7.0; 8.5% REMARK 280 ISOPROPANOL; 20% PEG 4,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.79050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.79050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1083 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1119 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 554 O HOH B 578 2.12 REMARK 500 O HOH A 951 O HOH A 994 2.18 REMARK 500 O TRP B 110 O HOH B 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 71 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 -157.86 -114.73 REMARK 500 THR A 111 -67.21 -120.44 REMARK 500 MET A 127 27.72 -141.05 REMARK 500 MET A 127 28.79 -141.52 REMARK 500 ASN A 130 -158.96 -127.33 REMARK 500 ASN A 151 65.29 60.13 REMARK 500 ASN A 174 -160.31 -116.08 REMARK 500 LEU A 206 56.42 -90.73 REMARK 500 ASN A 217 -158.67 -123.43 REMARK 500 ALA A 236 43.10 -142.60 REMARK 500 ASN A 239 -162.04 -124.57 REMARK 500 ASN A 261 -150.75 -138.32 REMARK 500 LYS A 264 -66.05 -135.20 REMARK 500 ALA A 304 64.99 60.36 REMARK 500 ASN A 305 -151.26 -133.80 REMARK 500 GLU A 330 -67.21 -127.54 REMARK 500 LEU A 346 11.69 -146.19 REMARK 500 ASN A 349 -159.97 -133.97 REMARK 500 PHE A 368 35.41 -148.92 REMARK 500 ASN A 370 69.90 65.56 REMARK 500 ASN A 393 -150.92 -113.74 REMARK 500 SER A 474 116.44 -161.31 REMARK 500 ASN B 107 62.04 -151.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 111 GLN B 112 -149.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1253 DISTANCE = 6.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 355 O REMARK 620 2 SER A 358 OG 69.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 466 OG1 REMARK 620 2 GLU A 468 O 101.3 REMARK 620 N 1 DBREF 8H63 A 36 496 UNP P0DJM0 INLA_LISMO 36 496 DBREF 8H63 B 1 120 PDB 8H63 8H63 1 120 SEQADV 8H63 SER A 35 UNP P0DJM0 EXPRESSION TAG SEQRES 1 A 462 SER ALA THR ILE THR GLN ASP THR PRO ILE ASN GLN ILE SEQRES 2 A 462 PHE THR ASP THR ALA LEU ALA GLU LYS MET LYS THR VAL SEQRES 3 A 462 LEU GLY LYS THR ASN VAL THR ASP THR VAL SER GLN THR SEQRES 4 A 462 ASP LEU ASP GLN VAL THR THR LEU GLN ALA ASP ARG LEU SEQRES 5 A 462 GLY ILE LYS SER ILE ASP GLY VAL GLU TYR LEU ASN ASN SEQRES 6 A 462 LEU THR GLN ILE ASN PHE SER ASN ASN GLN LEU THR ASP SEQRES 7 A 462 ILE THR PRO LEU LYS ASN LEU THR LYS LEU VAL ASP ILE SEQRES 8 A 462 LEU MET ASN ASN ASN GLN ILE ALA ASP ILE THR PRO LEU SEQRES 9 A 462 ALA ASN LEU THR ASN LEU THR GLY LEU THR LEU PHE ASN SEQRES 10 A 462 ASN GLN ILE THR ASP ILE ASP PRO LEU LYS ASN LEU THR SEQRES 11 A 462 ASN LEU ASN ARG LEU GLU LEU SER SER ASN THR ILE SER SEQRES 12 A 462 ASP ILE SER ALA LEU SER GLY LEU THR SER LEU GLN GLN SEQRES 13 A 462 LEU SER PHE GLY ASN GLN VAL THR ASP LEU LYS PRO LEU SEQRES 14 A 462 ALA ASN LEU THR THR LEU GLU ARG LEU ASP ILE SER SER SEQRES 15 A 462 ASN LYS VAL SER ASP ILE SER VAL LEU ALA LYS LEU THR SEQRES 16 A 462 ASN LEU GLU SER LEU ILE ALA THR ASN ASN GLN ILE SER SEQRES 17 A 462 ASP ILE THR PRO LEU GLY ILE LEU THR ASN LEU ASP GLU SEQRES 18 A 462 LEU SER LEU ASN GLY ASN GLN LEU LYS ASP ILE GLY THR SEQRES 19 A 462 LEU ALA SER LEU THR ASN LEU THR ASP LEU ASP LEU ALA SEQRES 20 A 462 ASN ASN GLN ILE SER ASN LEU ALA PRO LEU SER GLY LEU SEQRES 21 A 462 THR LYS LEU THR GLU LEU LYS LEU GLY ALA ASN GLN ILE SEQRES 22 A 462 SER ASN ILE SER PRO LEU ALA GLY LEU THR ALA LEU THR SEQRES 23 A 462 ASN LEU GLU LEU ASN GLU ASN GLN LEU GLU ASP ILE SER SEQRES 24 A 462 PRO ILE SER ASN LEU LYS ASN LEU THR TYR LEU THR LEU SEQRES 25 A 462 TYR PHE ASN ASN ILE SER ASP ILE SER PRO VAL SER SER SEQRES 26 A 462 LEU THR LYS LEU GLN ARG LEU PHE PHE TYR ASN ASN LYS SEQRES 27 A 462 VAL SER ASP VAL SER SER LEU ALA ASN LEU THR ASN ILE SEQRES 28 A 462 ASN TRP LEU SER ALA GLY HIS ASN GLN ILE SER ASP LEU SEQRES 29 A 462 THR PRO LEU ALA ASN LEU THR ARG ILE THR GLN LEU GLY SEQRES 30 A 462 LEU ASN ASP GLN ALA TRP THR ASN ALA PRO VAL ASN TYR SEQRES 31 A 462 LYS ALA ASN VAL SER ILE PRO ASN THR VAL LYS ASN VAL SEQRES 32 A 462 THR GLY ALA LEU ILE ALA PRO ALA THR ILE SER ASP GLY SEQRES 33 A 462 GLY SER TYR THR GLU PRO ASP ILE THR TRP ASN LEU PRO SEQRES 34 A 462 SER TYR THR ASN GLU VAL SER TYR THR PHE SER GLN PRO SEQRES 35 A 462 VAL THR ILE GLY LYS GLY THR THR THR PHE SER GLY THR SEQRES 36 A 462 VAL THR GLN PRO LEU LYS ALA SEQRES 1 B 120 GLU LEU GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 120 ALA GLY GLY SER LEU THR VAL SER CYS ALA ALA SER GLY SEQRES 3 B 120 SER ALA PHE SER VAL ASN VAL MET GLY TRP SER ARG GLN SEQRES 4 B 120 ALA PRO GLY LYS GLU ARG GLU LEU VAL ALA GLY ILE THR SEQRES 5 B 120 ARG ARG GLY ASN THR TYR TYR ALA ASP THR VAL LYS GLY SEQRES 6 B 120 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR LEU SEQRES 7 B 120 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 120 MET TYR TYR CYS ALA ALA LEU ALA ASP ILE ALA THR MET SEQRES 9 B 120 GLY PRO ASN ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 10 B 120 VAL SER GLY HET EPE A 501 15 HET IPA A 502 4 HET GOL A 503 12 HET NA A 504 1 HET NA A 505 1 HET NA A 506 1 HET GOL B 201 6 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN EPE HEPES HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EPE C8 H18 N2 O4 S FORMUL 4 IPA C3 H8 O FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 NA 3(NA 1+) FORMUL 10 HOH *763(H2 O) HELIX 1 AA1 ILE A 44 PHE A 48 1 5 HELIX 2 AA2 ASP A 50 LEU A 61 1 12 HELIX 3 AA3 SER A 71 GLN A 77 1 7 HELIX 4 AA4 GLY A 93 LEU A 97 5 5 HELIX 5 AA5 ILE A 113 LYS A 117 5 5 HELIX 6 AA6 ILE A 135 ALA A 139 5 5 HELIX 7 AA7 ILE A 157 LYS A 161 5 5 HELIX 8 AA8 ILE A 179 SER A 183 5 5 HELIX 9 AA9 LEU A 200 ALA A 204 5 5 HELIX 10 AB1 ILE A 222 LEU A 228 5 7 HELIX 11 AB2 ILE A 244 LEU A 250 5 7 HELIX 12 AB3 ILE A 266 LEU A 272 5 7 HELIX 13 AB4 LEU A 288 SER A 292 5 5 HELIX 14 AB5 ILE A 310 ALA A 314 5 5 HELIX 15 AB6 ILE A 332 LEU A 338 5 7 HELIX 16 AB7 ILE A 354 LEU A 360 5 7 HELIX 17 AB8 VAL A 376 ALA A 380 5 5 HELIX 18 AB9 LEU A 398 ALA A 402 5 5 HELIX 19 AC1 ASP A 449 GLY A 451 5 3 HELIX 20 AC2 GLY B 26 ASN B 32 5 7 HELIX 21 AC3 LYS B 86 THR B 90 5 5 SHEET 1 AA1 2 THR A 42 PRO A 43 0 SHEET 2 AA1 2 THR A 69 VAL A 70 -1 O VAL A 70 N THR A 42 SHEET 1 AA218 THR A 80 GLN A 82 0 SHEET 2 AA218 GLN A 102 ASN A 104 1 O ASN A 104 N LEU A 81 SHEET 3 AA218 ASP A 124 LEU A 126 1 O LEU A 126 N ILE A 103 SHEET 4 AA218 GLY A 146 THR A 148 1 O THR A 148 N ILE A 125 SHEET 5 AA218 ARG A 168 ILE A 176 1 O GLU A 170 N LEU A 147 SHEET 6 AA218 GLN A 190 ASN A 195 1 O GLN A 190 N LEU A 169 SHEET 7 AA218 ARG A 211 ASP A 213 1 O ASP A 213 N LEU A 191 SHEET 8 AA218 SER A 233 ILE A 235 1 O ILE A 235 N LEU A 212 SHEET 9 AA218 GLU A 255 SER A 257 1 O SER A 257 N LEU A 234 SHEET 10 AA218 ASP A 277 ASP A 279 1 O ASP A 277 N LEU A 256 SHEET 11 AA218 GLU A 299 LYS A 301 1 O LYS A 301 N LEU A 278 SHEET 12 AA218 ASN A 321 GLU A 323 1 O ASN A 321 N LEU A 300 SHEET 13 AA218 TYR A 343 THR A 345 1 O THR A 345 N LEU A 322 SHEET 14 AA218 ARG A 365 PHE A 367 1 O PHE A 367 N LEU A 344 SHEET 15 AA218 TRP A 387 SER A 389 1 O TRP A 387 N LEU A 366 SHEET 16 AA218 GLN A 409 THR A 418 1 O GLY A 411 N LEU A 388 SHEET 17 AA218 GLY A 482 LYS A 495 1 O SER A 487 N GLN A 415 SHEET 18 AA218 VAL A 422 ASN A 423 1 N VAL A 422 O LYS A 495 SHEET 1 AA319 THR A 80 GLN A 82 0 SHEET 2 AA319 GLN A 102 ASN A 104 1 O ASN A 104 N LEU A 81 SHEET 3 AA319 ASP A 124 LEU A 126 1 O LEU A 126 N ILE A 103 SHEET 4 AA319 GLY A 146 THR A 148 1 O THR A 148 N ILE A 125 SHEET 5 AA319 ARG A 168 ILE A 176 1 O GLU A 170 N LEU A 147 SHEET 6 AA319 GLN A 190 ASN A 195 1 O GLN A 190 N LEU A 169 SHEET 7 AA319 ARG A 211 ASP A 213 1 O ASP A 213 N LEU A 191 SHEET 8 AA319 SER A 233 ILE A 235 1 O ILE A 235 N LEU A 212 SHEET 9 AA319 GLU A 255 SER A 257 1 O SER A 257 N LEU A 234 SHEET 10 AA319 ASP A 277 ASP A 279 1 O ASP A 277 N LEU A 256 SHEET 11 AA319 GLU A 299 LYS A 301 1 O LYS A 301 N LEU A 278 SHEET 12 AA319 ASN A 321 GLU A 323 1 O ASN A 321 N LEU A 300 SHEET 13 AA319 TYR A 343 THR A 345 1 O THR A 345 N LEU A 322 SHEET 14 AA319 ARG A 365 PHE A 367 1 O PHE A 367 N LEU A 344 SHEET 15 AA319 TRP A 387 SER A 389 1 O TRP A 387 N LEU A 366 SHEET 16 AA319 GLN A 409 THR A 418 1 O GLY A 411 N LEU A 388 SHEET 17 AA319 GLY A 482 LYS A 495 1 O SER A 487 N GLN A 415 SHEET 18 AA319 GLU A 468 ILE A 479 -1 N VAL A 469 O GLN A 492 SHEET 19 AA319 THR A 446 ILE A 447 -1 N THR A 446 O THR A 472 SHEET 1 AA4 3 ASN A 427 PRO A 431 0 SHEET 2 AA4 3 ASP A 457 ASN A 461 -1 O ILE A 458 N ILE A 430 SHEET 3 AA4 3 SER A 452 THR A 454 -1 N SER A 452 O THR A 459 SHEET 1 AA5 4 GLN B 3 SER B 7 0 SHEET 2 AA5 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA5 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA5 4 PHE B 67 ASP B 72 -1 N THR B 68 O GLN B 81 SHEET 1 AA6 6 GLY B 10 GLN B 13 0 SHEET 2 AA6 6 THR B 114 SER B 119 1 O THR B 117 N GLY B 10 SHEET 3 AA6 6 ALA B 91 LEU B 98 -1 N TYR B 93 O THR B 114 SHEET 4 AA6 6 VAL B 33 GLN B 39 -1 N SER B 37 O TYR B 94 SHEET 5 AA6 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA6 6 THR B 57 TYR B 59 -1 O TYR B 58 N GLY B 50 SSBOND 1 CYS B 22 CYS B 95 1555 1555 2.03 LINK O SER A 355 NA NA A 505 1555 1555 2.80 LINK OG SER A 358 NA NA A 505 1555 1555 2.66 LINK OE2 GLU A 455 NA NA A 506 1555 1555 2.68 LINK OG1 THR A 466 NA NA A 504 1555 1555 2.41 LINK O GLU A 468 NA NA A 504 1555 1555 2.29 CISPEP 1 GLY A 194 ASN A 195 0 14.28 CISPEP 2 GLU A 455 PRO A 456 0 1.76 CRYST1 151.581 52.420 103.060 90.00 128.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006597 0.000000 0.005276 0.00000 SCALE2 0.000000 0.019077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012424 0.00000