HEADER HYDROLASE 19-OCT-22 8H78 TITLE CRYSTAL STRUCTURE OF HUMAN MMP-2 CATALYTIC DOMAIN IN COMPLEX WITH TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX METALLOPROTEINASE-2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.24.24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: MMP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS GELATINASE A, MATRIX METALLOPROTEINASE-2, 72 KDA TYPE IV COLLAGENASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KAMITANI,T.TAKEUCHI,M.MIMA REVDAT 3 29-NOV-23 8H78 1 REMARK REVDAT 2 25-JAN-23 8H78 1 JRNL REVDAT 1 18-JAN-23 8H78 0 JRNL AUTH T.TAKEUCHI,Y.NOMURA,T.TAMITA,R.NISHIKAWA,H.KAKINUMA, JRNL AUTH 2 N.KOJIMA,K.HITAKA,Y.TAMURA,M.KAMITANI,M.MIMA,A.NOZOE, JRNL AUTH 3 M.HAYASHI JRNL TITL DISCOVERY OF TP0597850: A SELECTIVE, CHEMICALLY STABLE, AND JRNL TITL 2 SLOW TIGHT-BINDING MATRIX METALLOPROTEINASE-2 INHIBITOR WITH JRNL TITL 3 A PHENYLBENZAMIDE-PENTAPEPTIDE HYBRID SCAFFOLD. JRNL REF J.MED.CHEM. V. 66 822 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 36595440 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01698 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.319 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 799 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.580 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.890 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2853 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2472 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3889 ; 1.601 ; 1.706 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5688 ; 1.220 ; 1.647 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 7.481 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;33.474 ;22.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;18.960 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.575 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3309 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 711 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1338 ; 3.033 ; 3.625 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1337 ; 3.017 ; 3.620 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1669 ; 4.923 ; 5.420 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1670 ; 4.930 ; 5.424 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1514 ; 2.648 ; 3.718 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1515 ; 2.647 ; 3.719 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2220 ; 4.267 ; 5.531 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12215 ; 9.506 ;67.043 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12209 ; 9.505 ;67.061 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8H78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300032963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 21.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: 3AYU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16 % W/V POLYETHYLENE GLYCOL 8,000, 20 REMARK 280 % V/V GLYCEROL, 40 MM POTASSIUM DI-HYDROGEN PHOSPHATE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.84150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.84150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.71700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.84150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.85850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.84150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.57550 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.84150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.84150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.71700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.84150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.57550 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.84150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 31.85850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 PHE B 116 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 133 CG CD OE1 NE2 REMARK 470 ARG B 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 68 -137.27 42.64 REMARK 500 ASP A 72 -1.64 -140.59 REMARK 500 TYR A 74 73.60 -113.83 REMARK 500 ASP A 80 -156.43 69.97 REMARK 500 TYR B 55 -63.29 -108.78 REMARK 500 TRP B 68 -134.01 57.82 REMARK 500 ASP B 77 27.23 -154.15 REMARK 500 ASP B 80 -153.44 49.98 REMARK 500 ALA B 84 177.02 175.99 REMARK 500 PRO B 141 26.31 -75.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD2 REMARK 620 2 ASP A 101 O 174.8 REMARK 620 3 ASP A 101 OD1 105.3 76.3 REMARK 620 4 GLU A 103 O 83.0 91.8 119.4 REMARK 620 5 HOH A 321 O 107.5 73.6 136.4 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 O REMARK 620 2 GLY A 94 O 75.4 REMARK 620 3 ASP A 96 OD1 78.0 94.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 ASP A 72 OD2 109.5 REMARK 620 3 HIS A 85 NE2 111.2 113.8 REMARK 620 4 HIS A 98 ND1 116.1 102.8 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 77 OD1 REMARK 620 2 GLY A 78 O 105.7 REMARK 620 3 ASP A 80 O 91.0 97.2 REMARK 620 4 LEU A 82 O 80.4 173.7 84.1 REMARK 620 5 ASP A 100 OD2 87.3 88.5 174.2 90.2 REMARK 620 6 GLU A 103 OE2 157.8 95.7 80.1 78.4 99.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 121 NE2 REMARK 620 2 HIS A 125 NE2 104.4 REMARK 620 3 HIS A 131 NE2 119.7 103.8 REMARK 620 4 L2U A 207 O1 122.6 110.5 94.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 24 OG1 REMARK 620 2 ASP B 26 OD1 67.9 REMARK 620 3 ASP B 26 OD2 81.0 46.9 REMARK 620 4 ASP B 101 O 121.4 149.5 154.0 REMARK 620 5 ASP B 101 OD1 51.1 112.3 130.0 70.3 REMARK 620 6 GLU B 103 O 127.7 133.2 88.8 67.4 108.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 60 O REMARK 620 2 GLY B 92 O 160.2 REMARK 620 3 GLY B 94 O 88.4 103.9 REMARK 620 4 ASP B 96 OD1 93.8 99.6 98.2 REMARK 620 5 HOH B 302 O 80.9 82.4 159.3 100.1 REMARK 620 6 HOH B 304 O 78.9 89.6 73.6 169.1 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 70 NE2 REMARK 620 2 ASP B 72 OD2 109.7 REMARK 620 3 HIS B 85 NE2 113.7 105.9 REMARK 620 4 HIS B 98 ND1 108.6 99.8 117.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 77 OD1 REMARK 620 2 GLY B 78 O 99.1 REMARK 620 3 ASP B 80 O 85.9 90.0 REMARK 620 4 LEU B 82 O 87.4 173.0 92.9 REMARK 620 5 ASP B 100 OD2 91.2 80.7 169.7 96.8 REMARK 620 6 GLU B 103 OE2 170.1 83.4 84.5 90.6 98.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 121 NE2 REMARK 620 2 HIS B 125 NE2 112.5 REMARK 620 3 HIS B 131 NE2 117.7 94.1 REMARK 620 4 L2U B 206 O1 133.2 92.9 97.7 REMARK 620 N 1 2 3 DBREF 8H78 A 1 168 PDB 8H78 8H78 1 168 DBREF 8H78 B 1 168 PDB 8H78 8H78 1 168 SEQRES 1 A 168 MET TYR ASN PHE PHE PRO ARG LYS PRO LYS TRP ASP LYS SEQRES 2 A 168 ASN GLN ILE THR TYR ARG ILE ILE GLY TYR THR PRO ASP SEQRES 3 A 168 LEU ALA PRO GLU THR VAL ASP ASP ALA PHE ALA ARG ALA SEQRES 4 A 168 PHE GLN VAL TRP SER ASP VAL THR PRO LEU ARG PHE SER SEQRES 5 A 168 ARG ILE TYR ASP GLY GLU ALA ASP ILE MET ILE ASN PHE SEQRES 6 A 168 GLY ARG TRP GLU HIS GLY ASP GLY TYR PRO PHE ASP GLY SEQRES 7 A 168 LYS ASP GLY LEU LEU ALA HIS ALA PHE ALA PRO GLY THR SEQRES 8 A 168 GLY VAL GLY GLY ASP SER HIS PHE ASP ASP ASP GLU LEU SEQRES 9 A 168 TRP THR LEU GLY LYS GLY VAL GLY TYR SER LEU PHE LEU SEQRES 10 A 168 VAL ALA ALA HIS ALA PHE GLY HIS ALA MET GLY LEU GLU SEQRES 11 A 168 HIS SER GLN ASP PRO GLY ALA LEU MET ALA PRO ILE TYR SEQRES 12 A 168 THR TYR THR LYS ASN PHE ARG LEU SER GLN ASP ASP ILE SEQRES 13 A 168 LYS GLY ILE GLN GLU LEU TYR GLY ALA SER PRO ASP SEQRES 1 B 168 MET TYR ASN PHE PHE PRO ARG LYS PRO LYS TRP ASP LYS SEQRES 2 B 168 ASN GLN ILE THR TYR ARG ILE ILE GLY TYR THR PRO ASP SEQRES 3 B 168 LEU ALA PRO GLU THR VAL ASP ASP ALA PHE ALA ARG ALA SEQRES 4 B 168 PHE GLN VAL TRP SER ASP VAL THR PRO LEU ARG PHE SER SEQRES 5 B 168 ARG ILE TYR ASP GLY GLU ALA ASP ILE MET ILE ASN PHE SEQRES 6 B 168 GLY ARG TRP GLU HIS GLY ASP GLY TYR PRO PHE ASP GLY SEQRES 7 B 168 LYS ASP GLY LEU LEU ALA HIS ALA PHE ALA PRO GLY THR SEQRES 8 B 168 GLY VAL GLY GLY ASP SER HIS PHE ASP ASP ASP GLU LEU SEQRES 9 B 168 TRP THR LEU GLY LYS GLY VAL GLY TYR SER LEU PHE LEU SEQRES 10 B 168 VAL ALA ALA HIS ALA PHE GLY HIS ALA MET GLY LEU GLU SEQRES 11 B 168 HIS SER GLN ASP PRO GLY ALA LEU MET ALA PRO ILE TYR SEQRES 12 B 168 THR TYR THR LYS ASN PHE ARG LEU SER GLN ASP ASP ILE SEQRES 13 B 168 LYS GLY ILE GLN GLU LEU TYR GLY ALA SER PRO ASP HET ZN A 201 1 HET ZN A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET 2HP A 206 5 HET L2U A 207 64 HET ZN B 201 1 HET ZN B 202 1 HET CA B 203 1 HET CA B 204 1 HET CA B 205 1 HET L2U B 206 64 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM 2HP DIHYDROGENPHOSPHATE ION HETNAM L2U (2~{R})-2-[[4-[(4-AMINOCARBONYLPHENYL) HETNAM 2 L2U CARBONYLAMINO]PHENYL]SULFONYLAMINO]-5-[(2~{S},4~{S})- HETNAM 3 L2U 4-AZANYL-2-[[(2~{S})-1-[[(2~{S})-1-[(5-AZANYL-5- HETNAM 4 L2U OXIDANYLIDENE-PENTYL)AMINO]-5-OXIDANYL-1,5- HETNAM 5 L2U BIS(OXIDANYLIDENE)PENTAN-2-YL]-METHYL-AMINO]-4-METHYL- HETNAM 6 L2U 1-OXIDANYLIDENE-PENTAN-2-YL]CARBAMOYL]PYRROLIDIN-1- HETNAM 7 L2U YL]-5-OXIDANYLIDENE-PENTANOIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CA 6(CA 2+) FORMUL 8 2HP H2 O4 P 1- FORMUL 9 L2U 2(C41 H57 N9 O13 S) FORMUL 16 HOH *31(H2 O) HELIX 1 AA1 ALA A 28 ASP A 45 1 18 HELIX 2 AA2 LEU A 115 MET A 127 1 13 HELIX 3 AA3 SER A 152 GLY A 164 1 13 HELIX 4 AA4 ALA B 28 ASP B 45 1 18 HELIX 5 AA5 LEU B 115 MET B 127 1 13 HELIX 6 AA6 SER B 152 GLY B 164 1 13 SHEET 1 AA1 5 ARG A 50 ARG A 53 0 SHEET 2 AA1 5 GLN A 15 ILE A 20 1 N ILE A 16 O ARG A 50 SHEET 3 AA1 5 ILE A 61 GLY A 66 1 O ILE A 63 N ARG A 19 SHEET 4 AA1 5 SER A 97 ASP A 100 1 O PHE A 99 N GLY A 66 SHEET 5 AA1 5 ALA A 84 ALA A 86 -1 N HIS A 85 O HIS A 98 SHEET 1 AA2 2 TRP A 105 THR A 106 0 SHEET 2 AA2 2 TYR A 113 SER A 114 1 O TYR A 113 N THR A 106 SHEET 1 AA3 5 ARG B 50 ARG B 53 0 SHEET 2 AA3 5 GLN B 15 ILE B 20 1 N ILE B 16 O ARG B 50 SHEET 3 AA3 5 ILE B 61 GLY B 66 1 O ILE B 63 N ARG B 19 SHEET 4 AA3 5 SER B 97 ASP B 100 1 O PHE B 99 N ASN B 64 SHEET 5 AA3 5 ALA B 84 ALA B 86 -1 N HIS B 85 O HIS B 98 SHEET 1 AA4 2 TRP B 105 THR B 106 0 SHEET 2 AA4 2 TYR B 113 SER B 114 1 O TYR B 113 N THR B 106 LINK OD2 ASP A 26 CA CA A 205 1555 1555 2.28 LINK O ASP A 60 CA CA A 204 1555 1555 2.24 LINK NE2 HIS A 70 ZN ZN A 202 1555 1555 1.97 LINK OD2 ASP A 72 ZN ZN A 202 1555 1555 1.97 LINK OD1 ASP A 77 CA CA A 203 1555 1555 2.71 LINK O GLY A 78 CA CA A 203 1555 1555 2.00 LINK O ASP A 80 CA CA A 203 1555 1555 2.25 LINK O LEU A 82 CA CA A 203 1555 1555 2.30 LINK NE2 HIS A 85 ZN ZN A 202 1555 1555 2.12 LINK O GLY A 94 CA CA A 204 1555 1555 3.08 LINK OD1 ASP A 96 CA CA A 204 1555 1555 2.62 LINK ND1 HIS A 98 ZN ZN A 202 1555 1555 1.92 LINK OD2 ASP A 100 CA CA A 203 1555 1555 2.27 LINK O ASP A 101 CA CA A 205 1555 1555 2.53 LINK OD1 ASP A 101 CA CA A 205 1555 1555 2.69 LINK OE2 GLU A 103 CA CA A 203 1555 1555 2.25 LINK O GLU A 103 CA CA A 205 1555 1555 2.41 LINK NE2 HIS A 121 ZN ZN A 201 1555 1555 1.83 LINK NE2 HIS A 125 ZN ZN A 201 1555 1555 2.04 LINK NE2 HIS A 131 ZN ZN A 201 1555 1555 2.11 LINK ZN ZN A 201 O1 L2U A 207 1555 1555 1.83 LINK CA CA A 205 O HOH A 321 1555 1555 3.08 LINK OG1 THR B 24 CA CA B 205 1555 1555 3.18 LINK OD1 ASP B 26 CA CA B 205 1555 1555 2.98 LINK OD2 ASP B 26 CA CA B 205 1555 1555 2.16 LINK O ASP B 60 CA CA B 204 1555 1555 2.08 LINK NE2 HIS B 70 ZN ZN B 202 1555 1555 1.98 LINK OD2 ASP B 72 ZN ZN B 202 1555 1555 1.77 LINK OD1 ASP B 77 CA CA B 203 1555 1555 2.51 LINK O GLY B 78 CA CA B 203 1555 1555 2.20 LINK O ASP B 80 CA CA B 203 1555 1555 2.20 LINK O LEU B 82 CA CA B 203 1555 1555 2.29 LINK NE2 HIS B 85 ZN ZN B 202 1555 1555 2.03 LINK O GLY B 92 CA CA B 204 1555 1555 2.30 LINK O GLY B 94 CA CA B 204 1555 1555 2.58 LINK OD1 ASP B 96 CA CA B 204 1555 1555 2.36 LINK ND1 HIS B 98 ZN ZN B 202 1555 1555 1.95 LINK OD2 ASP B 100 CA CA B 203 1555 1555 2.63 LINK O ASP B 101 CA CA B 205 1555 1555 2.79 LINK OD1 ASP B 101 CA CA B 205 1555 1555 2.45 LINK OE2 GLU B 103 CA CA B 203 1555 1555 2.10 LINK O GLU B 103 CA CA B 205 1555 1555 2.92 LINK NE2 HIS B 121 ZN ZN B 201 1555 1555 1.72 LINK NE2 HIS B 125 ZN ZN B 201 1555 1555 2.06 LINK NE2 HIS B 131 ZN ZN B 201 1555 1555 2.46 LINK ZN ZN B 201 O1 L2U B 206 1555 1555 1.97 LINK CA CA B 204 O HOH B 302 1555 1555 2.41 LINK CA CA B 204 O HOH B 304 1555 1555 2.47 CRYST1 79.683 79.683 127.434 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012550 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007847 0.00000 CONECT 233 2637 CONECT 502 2636 CONECT 597 2634 CONECT 609 2634 CONECT 650 2635 CONECT 655 2635 CONECT 668 2635 CONECT 680 2635 CONECT 707 2634 CONECT 761 2636 CONECT 772 2636 CONECT 786 2634 CONECT 808 2635 CONECT 812 2637 CONECT 815 2637 CONECT 828 2637 CONECT 833 2635 CONECT 970 2633 CONECT 1000 2633 CONECT 1044 2633 CONECT 1535 2711 CONECT 1550 2711 CONECT 1551 2711 CONECT 1820 2710 CONECT 1915 2708 CONECT 1927 2708 CONECT 1968 2709 CONECT 1973 2709 CONECT 1986 2709 CONECT 1998 2709 CONECT 2025 2708 CONECT 2068 2710 CONECT 2079 2710 CONECT 2090 2710 CONECT 2104 2708 CONECT 2126 2709 CONECT 2130 2711 CONECT 2133 2711 CONECT 2146 2711 CONECT 2151 2709 CONECT 2282 2707 CONECT 2312 2707 CONECT 2356 2707 CONECT 2633 970 1000 1044 2684 CONECT 2634 597 609 707 786 CONECT 2635 650 655 668 680 CONECT 2635 808 833 CONECT 2636 502 761 772 CONECT 2637 233 812 815 828 CONECT 2637 2796 CONECT 2638 2639 2640 2641 2642 CONECT 2639 2638 CONECT 2640 2638 CONECT 2641 2638 CONECT 2642 2638 CONECT 2643 2644 CONECT 2644 2643 2645 2646 CONECT 2645 2644 CONECT 2646 2644 2647 CONECT 2647 2646 2648 CONECT 2648 2647 2649 2659 CONECT 2649 2648 2650 2651 CONECT 2650 2649 CONECT 2651 2649 2652 CONECT 2652 2651 2653 CONECT 2653 2652 2654 CONECT 2654 2653 2655 CONECT 2655 2654 2656 CONECT 2656 2655 2657 2658 CONECT 2657 2656 CONECT 2658 2656 CONECT 2659 2648 2660 2661 CONECT 2660 2659 CONECT 2661 2659 2662 2663 CONECT 2662 2661 CONECT 2663 2661 2664 2668 CONECT 2664 2663 2665 CONECT 2665 2664 2666 2667 CONECT 2666 2665 CONECT 2667 2665 CONECT 2668 2663 2669 CONECT 2669 2668 2670 2671 CONECT 2670 2669 CONECT 2671 2669 2672 2673 CONECT 2672 2671 2675 CONECT 2673 2671 2674 2677 CONECT 2674 2673 2675 CONECT 2675 2672 2674 2676 CONECT 2676 2675 CONECT 2677 2673 2678 2679 CONECT 2678 2677 CONECT 2679 2677 2680 CONECT 2680 2679 2681 CONECT 2681 2680 2682 2685 CONECT 2682 2681 2683 2684 CONECT 2683 2682 CONECT 2684 2633 2682 CONECT 2685 2681 2686 CONECT 2686 2685 2687 2688 2689 CONECT 2687 2686 CONECT 2688 2686 CONECT 2689 2686 2690 2691 CONECT 2690 2689 2694 CONECT 2691 2689 2692 CONECT 2692 2691 2693 CONECT 2693 2692 2694 2695 CONECT 2694 2690 2693 CONECT 2695 2693 2696 CONECT 2696 2695 2697 2698 CONECT 2697 2696 CONECT 2698 2696 2699 2700 CONECT 2699 2698 2703 CONECT 2700 2698 2701 CONECT 2701 2700 2702 CONECT 2702 2701 2703 2704 CONECT 2703 2699 2702 CONECT 2704 2702 2705 2706 CONECT 2705 2704 CONECT 2706 2704 CONECT 2707 2282 2312 2356 2753 CONECT 2708 1915 1927 2025 2104 CONECT 2709 1968 1973 1986 1998 CONECT 2709 2126 2151 CONECT 2710 1820 2068 2079 2090 CONECT 2710 2798 2800 CONECT 2711 1535 1550 1551 2130 CONECT 2711 2133 2146 CONECT 2712 2713 CONECT 2713 2712 2714 2715 CONECT 2714 2713 CONECT 2715 2713 2716 CONECT 2716 2715 2717 CONECT 2717 2716 2718 2728 CONECT 2718 2717 2719 2720 CONECT 2719 2718 CONECT 2720 2718 2721 CONECT 2721 2720 2722 CONECT 2722 2721 2723 CONECT 2723 2722 2724 CONECT 2724 2723 2725 CONECT 2725 2724 2726 2727 CONECT 2726 2725 CONECT 2727 2725 CONECT 2728 2717 2729 2730 CONECT 2729 2728 CONECT 2730 2728 2731 2732 CONECT 2731 2730 CONECT 2732 2730 2733 2737 CONECT 2733 2732 2734 CONECT 2734 2733 2735 2736 CONECT 2735 2734 CONECT 2736 2734 CONECT 2737 2732 2738 CONECT 2738 2737 2739 2740 CONECT 2739 2738 CONECT 2740 2738 2741 2742 CONECT 2741 2740 2744 CONECT 2742 2740 2743 2746 CONECT 2743 2742 2744 CONECT 2744 2741 2743 2745 CONECT 2745 2744 CONECT 2746 2742 2747 2748 CONECT 2747 2746 CONECT 2748 2746 2749 CONECT 2749 2748 2750 CONECT 2750 2749 2751 2754 CONECT 2751 2750 2752 2753 CONECT 2752 2751 CONECT 2753 2707 2751 CONECT 2754 2750 2755 CONECT 2755 2754 2756 2757 2758 CONECT 2756 2755 CONECT 2757 2755 CONECT 2758 2755 2759 2760 CONECT 2759 2758 2763 CONECT 2760 2758 2761 CONECT 2761 2760 2762 CONECT 2762 2761 2763 2764 CONECT 2763 2759 2762 CONECT 2764 2762 2765 CONECT 2765 2764 2766 2767 CONECT 2766 2765 CONECT 2767 2765 2768 2769 CONECT 2768 2767 2772 CONECT 2769 2767 2770 CONECT 2770 2769 2771 CONECT 2771 2770 2772 2773 CONECT 2772 2768 2771 CONECT 2773 2771 2774 2775 CONECT 2774 2773 CONECT 2775 2773 CONECT 2796 2637 CONECT 2798 2710 CONECT 2800 2710 MASTER 417 0 13 6 14 0 0 6 2804 2 194 26 END