HEADER STRUCTURAL PROTEIN 21-OCT-22 8H85 TITLE TRANS-3/4-PROLINE-HYDROXYLASE H11 WITH 3-HYDROXYL-PROLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYTANOYL-COA DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM ESNAPD13; SOURCE 3 ORGANISM_TAXID: 1366593; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS L-PROLINE, TRANS, HYDROXYLASE, AKG, HYDROLASE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.M.GONG,X.Y.HU REVDAT 3 29-NOV-23 8H85 1 REMARK REVDAT 2 15-NOV-23 8H85 1 ATOM REVDAT 1 19-APR-23 8H85 0 JRNL AUTH X.HU,X.HUANG,J.LIU,P.ZHENG,W.GONG,L.YANG JRNL TITL STRUCTURES OF L-PROLINE TRANS-HYDROXYLASE REVEAL THE JRNL TITL 2 CATALYTIC SPECIFICITY AND PROVIDE DEEPER INSIGHT INTO JRNL TITL 3 AKG-DEPENDENT HYDROXYLATION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 318 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 36974966 JRNL DOI 10.1107/S2059798323001936 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 854 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2141 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1894 ; 0.005 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2913 ; 1.654 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4402 ; 0.562 ; 1.552 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 7.800 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ;24.533 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;17.285 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2506 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 458 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): -20.2313 5.4531 -9.4102 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: 0.1993 REMARK 3 T33: 0.0354 T12: 0.0400 REMARK 3 T13: 0.0178 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.4082 L22: 0.2658 REMARK 3 L33: 2.0121 L12: 0.1521 REMARK 3 L13: -0.7702 L23: 0.0779 REMARK 3 S TENSOR REMARK 3 S11: 0.0985 S12: -0.0259 S13: 0.0887 REMARK 3 S21: -0.0132 S22: -0.0362 S23: -0.0432 REMARK 3 S31: -0.1203 S32: -0.3803 S33: -0.0623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8H85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300033045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6LNS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 AND 0.1M BIS-TRIS PROPANE (PH 7.0), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.82500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.91250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.73750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.82500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.73750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.91250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 53 REMARK 465 GLN A 54 REMARK 465 ASN A 55 REMARK 465 THR A 56 REMARK 465 GLY A 166 REMARK 465 GLU A 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -1 CG CD OE1 NE2 REMARK 470 ILE A 0 CG1 CG2 CD1 REMARK 470 MET A 1 CG SD CE REMARK 470 ILE A 58 CG1 CG2 CD1 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 VAL A 183 CG1 CG2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 42 CD GLU A 42 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 0 52.88 -94.86 REMARK 500 ALA A 105 125.21 -31.82 REMARK 500 PRO A 129 40.58 -76.51 REMARK 500 TRP A 169 35.70 -83.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 60 0.16 SIDE CHAIN REMARK 500 ARG A 74 0.10 SIDE CHAIN REMARK 500 ARG A 77 0.27 SIDE CHAIN REMARK 500 ARG A 90 0.10 SIDE CHAIN REMARK 500 ARG A 104 0.07 SIDE CHAIN REMARK 500 ARG A 130 0.08 SIDE CHAIN REMARK 500 ARG A 187 0.10 SIDE CHAIN REMARK 500 ARG A 246 0.09 SIDE CHAIN REMARK 500 ARG A 253 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8H85 A 1 266 UNP S5TUM1 S5TUM1_9BACT 1 266 SEQADV 8H85 GLN A -1 UNP S5TUM1 EXPRESSION TAG SEQADV 8H85 ILE A 0 UNP S5TUM1 EXPRESSION TAG SEQRES 1 A 268 GLN ILE MET GLU PRO HIS ASP THR LEU SER PRO ALA GLN SEQRES 2 A 268 VAL ASP GLU TYR ARG LYS ASN GLY PHE LEU VAL GLN GLU SEQRES 3 A 268 HIS VAL PHE ASP GLU GLU GLU ILE GLU LEU LEU ARG ALA SEQRES 4 A 268 GLU ALA ALA GLN GLU PHE ALA SER GLY GLY GLU ARG VAL SEQRES 5 A 268 THR VAL GLU GLN ASN THR GLY ILE VAL ARG GLY VAL HIS SEQRES 6 A 268 GLY CYS HIS LEU TYR SER GLU VAL PHE GLY ARG LEU VAL SEQRES 7 A 268 ARG SER PRO ARG LEU LEU PRO ILE ALA ARG GLN LEU LEU SEQRES 8 A 268 ARG ASP ASP VAL TYR VAL HIS GLN PHE LYS ILE ASN ALA SEQRES 9 A 268 LYS ARG ALA PHE LYS GLY GLU VAL TRP GLU TRP HIS GLN SEQRES 10 A 268 ASP TYR THR PHE TRP HIS HIS GLU ASP GLY MET PRO ALA SEQRES 11 A 268 PRO ARG ALA LEU SER ALA ALA ILE PHE LEU ASP GLU VAL SEQRES 12 A 268 THR GLU PHE ASN GLY PRO LEU THR PHE VAL PRO GLY GLY SEQRES 13 A 268 HIS GLY SER GLY MET ILE ASP ALA ASP VAL LYS GLY GLU SEQRES 14 A 268 GLY TRP ALA ASN THR LEU THR ALA SER LEU LYS TYR SER SEQRES 15 A 268 LEU ASP VAL GLU THR MET ARG GLY LEU ILE GLU ARG ASN SEQRES 16 A 268 GLY MET VAL ALA PRO LYS GLY PRO ARG GLY SER VAL LEU SEQRES 17 A 268 TRP PHE ASP ALA ASN ILE PRO HIS SER SER VAL PRO ASN SEQRES 18 A 268 ILE SER PRO PHE ASP ARG GLY LEU VAL LEU ILE THR TYR SEQRES 19 A 268 ASN SER VAL GLU ASN LYS THR ASP VAL THR ARG GLY THR SEQRES 20 A 268 ARG PRO GLU TRP LEU ALA ALA ARG ASP PHE THR PRO LEU SEQRES 21 A 268 THR ALA LEU GLN ALA THR SER PHE HET HY3 A 301 9 HETNAM HY3 3-HYDROXYPROLINE HETSYN HY3 (2S,3S)-3-HYDROXYPYRROLIDINE-2-CARBOXYLIC ACID FORMUL 2 HY3 C5 H9 N O3 FORMUL 3 HOH *61(H2 O) HELIX 1 AA1 SER A 8 GLY A 19 1 12 HELIX 2 AA2 ASP A 28 GLY A 46 1 19 HELIX 3 AA3 CYS A 65 TYR A 68 5 4 HELIX 4 AA4 SER A 69 VAL A 76 1 8 HELIX 5 AA5 LEU A 81 ARG A 90 1 10 HELIX 6 AA6 GLN A 115 GLY A 125 1 11 HELIX 7 AA7 GLY A 153 GLY A 158 5 6 HELIX 8 AA8 ASP A 182 GLY A 194 1 13 SHEET 1 AA1 7 PHE A 20 GLN A 23 0 SHEET 2 AA1 7 VAL A 205 ASP A 209 -1 O TRP A 207 N LEU A 21 SHEET 3 AA1 7 ALA A 131 PHE A 137 -1 N ALA A 135 O LEU A 206 SHEET 4 AA1 7 ARG A 225 SER A 234 -1 O VAL A 228 N ILE A 136 SHEET 5 AA1 7 VAL A 93 LYS A 103 -1 N LYS A 99 O LEU A 229 SHEET 6 AA1 7 GLY A 61 HIS A 63 -1 N VAL A 62 O ILE A 100 SHEET 7 AA1 7 VAL A 50 THR A 51 -1 N THR A 51 O GLY A 61 SHEET 1 AA2 3 TRP A 111 HIS A 114 0 SHEET 2 AA2 3 HIS A 214 SER A 216 -1 O HIS A 214 N HIS A 114 SHEET 3 AA2 3 THR A 149 PHE A 150 -1 N THR A 149 O SER A 215 SHEET 1 AA3 2 ASP A 163 VAL A 164 0 SHEET 2 AA3 2 TYR A 179 SER A 180 -1 O SER A 180 N ASP A 163 CRYST1 75.390 75.390 143.650 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013264 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006961 0.00000