HEADER MEMBRANE PROTEIN 25-OCT-22 8H9Y TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB N49K/L176Q TITLE 2 MUTANT IN CALCIUM ION CONDITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VOLTAGE-GATED SODIUM CHANNEL; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIARCOBACTER BUTZLERI; SOURCE 3 ORGANISM_TAXID: 28197; SOURCE 4 GENE: ABU_1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE,Y.ODA REVDAT 1 26-JUL-23 8H9Y 0 JRNL AUTH K.IRIE,Y.ODA,T.SUMIKAMA,A.OSHIMA,Y.FUJIYOSHI JRNL TITL THE STRUCTURAL BASIS OF DIVALENT CATION BLOCK IN A JRNL TITL 2 TETRAMERIC PROKARYOTIC SODIUM CHANNEL. JRNL REF NAT COMMUN V. 14 4236 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37454189 JRNL DOI 10.1038/S41467-023-39987-0 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 10964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7800 - 9.1500 0.99 632 30 0.2895 0.2835 REMARK 3 2 9.1400 - 7.2900 1.00 581 39 0.2232 0.2825 REMARK 3 3 7.2900 - 6.3800 1.00 588 26 0.3135 0.3394 REMARK 3 4 6.3800 - 5.8000 1.00 567 34 0.3262 0.3572 REMARK 3 5 5.8000 - 5.3900 1.00 574 24 0.3200 0.2963 REMARK 3 6 5.3900 - 5.0700 1.00 570 30 0.2512 0.2206 REMARK 3 7 5.0700 - 4.8200 1.00 547 34 0.2364 0.2730 REMARK 3 8 4.8200 - 4.6100 1.00 551 34 0.2173 0.2269 REMARK 3 9 4.6100 - 4.4400 1.00 567 27 0.2125 0.2349 REMARK 3 10 4.4300 - 4.2800 1.00 571 29 0.2296 0.2541 REMARK 3 11 4.2800 - 4.1500 1.00 554 35 0.2259 0.2433 REMARK 3 12 4.1500 - 4.0300 1.00 544 30 0.2061 0.1684 REMARK 3 13 4.0300 - 3.9200 1.00 576 19 0.2171 0.1984 REMARK 3 14 3.9200 - 3.8300 1.00 561 24 0.2494 0.2422 REMARK 3 15 3.8300 - 3.7400 1.00 555 22 0.2666 0.3090 REMARK 3 16 3.7400 - 3.6600 1.00 555 21 0.2526 0.3027 REMARK 3 17 3.6600 - 3.5900 0.98 540 37 0.2639 0.3145 REMARK 3 18 3.5900 - 3.5200 0.67 373 17 0.2714 0.2608 REMARK 3 19 3.5200 - 3.4600 0.46 246 13 0.2761 0.3000 REMARK 3 20 3.4600 - 3.4000 0.32 180 7 0.2904 0.1746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.383 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2367 REMARK 3 ANGLE : 1.243 3154 REMARK 3 CHIRALITY : 0.062 358 REMARK 3 PLANARITY : 0.006 322 REMARK 3 DIHEDRAL : 23.628 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 999 THROUGH 1041 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5605 -17.8176 28.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.5047 T22: 0.7464 REMARK 3 T33: 0.6029 T12: 0.3424 REMARK 3 T13: -0.2240 T23: 0.2411 REMARK 3 L TENSOR REMARK 3 L11: 2.8226 L22: 1.6188 REMARK 3 L33: 2.1791 L12: -0.2497 REMARK 3 L13: 0.6671 L23: -0.5111 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: -0.0162 S13: -0.1044 REMARK 3 S21: 0.3703 S22: -0.1558 S23: -0.6150 REMARK 3 S31: 0.3156 S32: 0.4223 S33: 0.2464 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1042 THROUGH 1066 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6306 -24.8042 26.3709 REMARK 3 T TENSOR REMARK 3 T11: 0.7212 T22: 0.8022 REMARK 3 T33: 0.6881 T12: 0.5493 REMARK 3 T13: -0.1798 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 4.0484 L22: 4.0748 REMARK 3 L33: 2.6737 L12: -2.1673 REMARK 3 L13: 1.4029 L23: -1.6748 REMARK 3 S TENSOR REMARK 3 S11: 0.2646 S12: 0.6846 S13: 0.0469 REMARK 3 S21: -0.3086 S22: -0.2939 S23: -0.1021 REMARK 3 S31: 0.1291 S32: 0.3251 S33: 0.1202 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1067 THROUGH 1095 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0386 -28.8159 29.8799 REMARK 3 T TENSOR REMARK 3 T11: 1.3744 T22: 0.8052 REMARK 3 T33: 0.7349 T12: 0.4801 REMARK 3 T13: -0.2866 T23: 0.1543 REMARK 3 L TENSOR REMARK 3 L11: 4.2295 L22: 4.7564 REMARK 3 L33: 1.2076 L12: -2.3391 REMARK 3 L13: 1.6288 L23: -2.3177 REMARK 3 S TENSOR REMARK 3 S11: 0.5912 S12: 0.4689 S13: -0.8656 REMARK 3 S21: -1.3545 S22: -0.4937 S23: 0.1093 REMARK 3 S31: 1.3041 S32: 0.5814 S33: -0.2111 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1096 THROUGH 1113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8025 -19.7093 23.5578 REMARK 3 T TENSOR REMARK 3 T11: 0.7199 T22: 0.4478 REMARK 3 T33: 0.5713 T12: 0.2200 REMARK 3 T13: -0.0654 T23: 0.2158 REMARK 3 L TENSOR REMARK 3 L11: 7.4493 L22: 3.8437 REMARK 3 L33: 7.7014 L12: -0.3258 REMARK 3 L13: 3.9173 L23: -1.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.4036 S12: 0.4930 S13: -0.6720 REMARK 3 S21: -0.2447 S22: -0.1664 S23: -0.6273 REMARK 3 S31: 1.5247 S32: 1.0444 S33: -0.2616 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1114 THROUGH 1152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2146 -17.0128 29.1065 REMARK 3 T TENSOR REMARK 3 T11: 0.2768 T22: 0.2396 REMARK 3 T33: 0.2019 T12: -0.1202 REMARK 3 T13: 0.0255 T23: 0.1463 REMARK 3 L TENSOR REMARK 3 L11: 1.0755 L22: 1.6096 REMARK 3 L33: 1.0637 L12: 0.4597 REMARK 3 L13: -0.1378 L23: 0.6486 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: -0.2570 S13: -0.1356 REMARK 3 S21: 0.3832 S22: -0.0802 S23: -0.2143 REMARK 3 S31: 0.4491 S32: 0.1815 S33: -0.0078 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1153 THROUGH 1162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9188 -17.2655 5.9187 REMARK 3 T TENSOR REMARK 3 T11: 0.3156 T22: 0.1554 REMARK 3 T33: 0.1057 T12: -0.1728 REMARK 3 T13: 0.1435 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.0300 L22: 4.0716 REMARK 3 L33: 4.9719 L12: 0.3069 REMARK 3 L13: -0.2791 L23: -1.3279 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: 0.0728 S13: -0.1167 REMARK 3 S21: -0.1811 S22: -0.0056 S23: -0.1091 REMARK 3 S31: 0.3833 S32: -0.1252 S33: 0.1016 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1163 THROUGH 1193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5809 -9.4481 12.2558 REMARK 3 T TENSOR REMARK 3 T11: -0.0517 T22: -0.0801 REMARK 3 T33: 0.0946 T12: -0.1829 REMARK 3 T13: 0.1486 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.8466 L22: 1.4448 REMARK 3 L33: 1.0171 L12: 0.6036 REMARK 3 L13: -0.3706 L23: -0.3596 REMARK 3 S TENSOR REMARK 3 S11: -0.1494 S12: 0.0473 S13: -0.2277 REMARK 3 S21: -0.0496 S22: -0.0054 S23: 0.1249 REMARK 3 S31: 0.2065 S32: -0.1257 S33: -0.5808 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1194 THROUGH 1226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4552 -7.6352 32.4826 REMARK 3 T TENSOR REMARK 3 T11: 0.2892 T22: 0.3910 REMARK 3 T33: 0.1363 T12: -0.1267 REMARK 3 T13: 0.0304 T23: 0.1789 REMARK 3 L TENSOR REMARK 3 L11: 2.8259 L22: 3.2255 REMARK 3 L33: 2.5000 L12: -0.8419 REMARK 3 L13: -0.1840 L23: 0.1050 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: -0.6920 S13: 0.0093 REMARK 3 S21: 0.8430 S22: -0.0355 S23: -0.4270 REMARK 3 S31: 0.0131 S32: 0.4516 S33: 0.1380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8H9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1300033127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11874 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 89.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YUC REMARK 200 REMARK 200 REMARK: PYRAMIDAL SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9%-11% PEG MME 2000, 100 MM SODIUM REMARK 280 CHLORIDE, 100 MM MAGNESIUM NITRATE, 25 MM CADMIUM NITRATE, 100 REMARK 280 MM TRIS-HCL, PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.97000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.96000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.97000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.96000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.97000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.96000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.97000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.96000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.97000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.96000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.97000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.96000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.97000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.96000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.97000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.97000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 52270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -303.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1313 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1412 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 997 REMARK 465 SER A 998 REMARK 465 SER A 1000 REMARK 465 LYS A 1227 REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 465 GLU A 1240 REMARK 465 ASP A 1241 REMARK 465 ASN A 1242 REMARK 465 ILE A 1243 REMARK 465 ASN A 1244 REMARK 465 ASN A 1245 REMARK 465 GLU A 1246 REMARK 465 ILE A 1247 REMARK 465 ILE A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 ARG A 1251 REMARK 465 GLU A 1252 REMARK 465 GLU A 1253 REMARK 465 ILE A 1254 REMARK 465 VAL A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 LYS A 1258 REMARK 465 GLU A 1259 REMARK 465 LEU A 1260 REMARK 465 ILE A 1261 REMARK 465 LYS A 1262 REMARK 465 THR A 1263 REMARK 465 SER A 1264 REMARK 465 LEU A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1155 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A1183 -64.47 -106.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1411 DISTANCE = 6.24 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1N7 A 1303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1312 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A1175 O REMARK 620 2 GLN A1176 OE1 73.1 REMARK 620 3 LMT A1301 O6' 90.5 61.8 REMARK 620 N 1 2 DBREF 8H9Y A 1001 1267 UNP A8EVM5 A8EVM5_ALIB4 1 267 SEQADV 8H9Y GLY A 997 UNP A8EVM5 EXPRESSION TAG SEQADV 8H9Y SER A 998 UNP A8EVM5 EXPRESSION TAG SEQADV 8H9Y GLY A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 8H9Y SER A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 8H9Y LYS A 1049 UNP A8EVM5 ASN 49 ENGINEERED MUTATION SEQADV 8H9Y GLN A 1176 UNP A8EVM5 LEU 176 ENGINEERED MUTATION SEQRES 1 A 271 GLY SER GLY SER MET TYR LEU ARG ILE THR ASN ILE VAL SEQRES 2 A 271 GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU ILE SEQRES 3 A 271 VAL LEU ASN GLY ILE THR MET GLY LEU GLU THR SER LYS SEQRES 4 A 271 THR PHE MET GLN SER PHE GLY VAL TYR THR THR LEU PHE SEQRES 5 A 271 LYS GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE ILE SEQRES 6 A 271 LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS ASP SEQRES 7 A 271 PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SER SEQRES 8 A 271 LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG VAL SEQRES 9 A 271 LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA VAL SEQRES 10 A 271 PRO GLN MET ARG LYS ILE VAL SER ALA LEU ILE SER VAL SEQRES 11 A 271 ILE PRO GLY MET LEU SER VAL ILE ALA LEU MET THR LEU SEQRES 12 A 271 PHE PHE TYR ILE PHE ALA ILE MET ALA THR GLN LEU PHE SEQRES 13 A 271 GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY GLU SEQRES 14 A 271 SER PHE TYR THR LEU PHE GLN VAL MET THR GLN GLU SER SEQRES 15 A 271 TRP SER MET GLY ILE VAL ARG PRO LEU MET GLU VAL TYR SEQRES 16 A 271 PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE VAL SEQRES 17 A 271 VAL THR PHE VAL MET ILE ASN LEU VAL VAL ALA ILE ILE SEQRES 18 A 271 VAL ASP ALA MET ALA ILE LEU ASN GLN LYS GLU GLU GLN SEQRES 19 A 271 HIS ILE ILE ASP GLU VAL GLN SER HIS GLU ASP ASN ILE SEQRES 20 A 271 ASN ASN GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL GLU SEQRES 21 A 271 LEU LYS GLU LEU ILE LYS THR SER LEU LYS ASN HET LMT A1301 35 HET LMT A1302 35 HET 1N7 A1303 32 HET PX4 A1304 46 HET PX4 A1305 46 HET PX4 A1306 46 HET PX4 A1307 46 HET PX4 A1308 46 HET PX4 A1309 46 HET PX4 A1310 46 HET PX4 A1311 46 HET CA A1312 1 HET CA A1313 1 HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM 1N7 CHAPSO HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM CA CALCIUM ION HETSYN 1N7 2-HYDROXY-N,N-DIMETHYL-3-SULFO-N-(3-{[(3BETA,5BETA, HETSYN 2 1N7 7BETA,12BETA)-3,7,12-TRIHYDROXY-24-OXOCHOLAN-24- HETSYN 3 1N7 YL]AMINO}PROPYL)PROPAN-1-AMINIUM FORMUL 2 LMT 2(C24 H46 O11) FORMUL 4 1N7 C32 H59 N2 O8 S 1+ FORMUL 5 PX4 8(C36 H73 N O8 P 1+) FORMUL 13 CA 2(CA 2+) FORMUL 15 HOH *12(H2 O) HELIX 1 AA1 TYR A 1002 GLU A 1010 1 9 HELIX 2 AA2 SER A 1011 GLU A 1032 1 22 HELIX 3 AA3 SER A 1034 PHE A 1041 1 8 HELIX 4 AA4 PHE A 1041 HIS A 1067 1 27 HELIX 5 AA5 HIS A 1067 PHE A 1072 1 6 HELIX 6 AA6 ASP A 1074 VAL A 1089 1 16 HELIX 7 AA7 PHE A 1095 ARG A 1102 1 8 HELIX 8 AA8 VAL A 1103 LEU A 1106 5 4 HELIX 9 AA9 PHE A 1107 VAL A 1113 1 7 HELIX 10 AB1 VAL A 1113 ILE A 1127 1 15 HELIX 11 AB2 MET A 1130 GLY A 1153 1 24 HELIX 12 AB3 PHE A 1156 GLY A 1161 1 6 HELIX 13 AB4 THR A 1162 THR A 1175 1 14 HELIX 14 AB5 ILE A 1183 GLU A 1189 1 7 HELIX 15 AB6 ALA A 1194 GLN A 1226 1 33 LINK O THR A1175 CA CA A1312 1555 3555 3.10 LINK OE1 GLN A1176 CA CA A1312 1555 1555 2.99 LINK O6' LMT A1301 CA CA A1312 1555 3555 2.32 CRYST1 127.940 127.940 201.920 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007816 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004952 0.00000