HEADER VIRAL PROTEIN/IMMUNE SYSTEM 01-NOV-22 8HC6 TITLE SARS-COV-2 OMICRON BA.1 SPIKE TRIMER (6P) IN COMPLEX WITH YB9-258 FAB, TITLE 2 FOCUSED REFINEMENT OF FAB REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF YB9-258 FAB; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN OF YB9-258; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: SPIKE PROTEIN S1; COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 23 2; SOURCE 24 ORGANISM_TAXID: 2697049; SOURCE 25 GENE: S, 2; SOURCE 26 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 28 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS SPIKE PROTEIN, RBD, ANTIBODY, FAB, VIRAL PROTEIN, VIRAL PROTEIN- KEYWDS 2 IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR B.LIU,X.GAO,Q.CHEN,Z.LI,M.SU,J.HE,X.XIONG REVDAT 4 02-JUL-25 8HC6 1 REMARK REVDAT 3 16-OCT-24 8HC6 1 REMARK REVDAT 2 03-MAY-23 8HC6 1 JRNL REVDAT 1 25-JAN-23 8HC6 0 JRNL AUTH H.YU,B.LIU,Y.ZHANG,X.GAO,Q.WANG,H.XIANG,X.PENG,C.XIE,Y.WANG, JRNL AUTH 2 P.HU,J.SHI,Q.SHI,P.ZHENG,C.FENG,G.TANG,X.LIU,L.GUO,X.LIN, JRNL AUTH 3 J.LI,C.LIU,Y.HUANG,N.YANG,Q.CHEN,Z.LI,M.SU,Q.YAN,R.PEI, JRNL AUTH 4 X.CHEN,L.LIU,F.HU,D.LIANG,B.KE,C.KE,F.LI,J.HE,M.WANG,L.CHEN, JRNL AUTH 5 X.XIONG,X.TANG JRNL TITL SOMATICALLY HYPERMUTATED ANTIBODIES ISOLATED FROM SARS-COV-2 JRNL TITL 2 DELTA INFECTED PATIENTS CROSS-NEUTRALIZE HETEROLOGOUS JRNL TITL 3 VARIANTS. JRNL REF NAT COMMUN V. 14 1058 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36828833 JRNL DOI 10.1038/S41467-023-36761-0 REMARK 2 REMARK 2 RESOLUTION. 4.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, RELION, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.690 REMARK 3 NUMBER OF PARTICLES : 287435 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8HC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033314. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 OMICRON BA.1 SPIKE REMARK 245 (6P) IN COMPLEX WITH YB13-292 REMARK 245 FAB, FOCUSED REFINEMENT OF RBD REMARK 245 REGION; SARS-COV-2 OMICRON BA.1 REMARK 245 SPIKE PROTEIN; YB13-292 FAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 132 REMARK 465 SER H 133 REMARK 465 THR H 134 REMARK 465 SER H 135 REMARK 465 GLY H 136 REMARK 465 GLY H 137 REMARK 465 SER B 71 REMARK 465 GLY B 72 REMARK 465 THR B 73 REMARK 465 ASN B 74 REMARK 465 GLY B 75 REMARK 465 THR B 76 REMARK 465 HIS B 146 REMARK 465 LYS B 147 REMARK 465 ASN B 148 REMARK 465 ASN B 149 REMARK 465 LYS B 150 REMARK 465 SER B 151 REMARK 465 TRP B 152 REMARK 465 MET B 177 REMARK 465 ASP B 178 REMARK 465 LEU B 179 REMARK 465 GLU B 180 REMARK 465 GLY B 181 REMARK 465 LYS B 182 REMARK 465 GLN B 183 REMARK 465 GLY B 184 REMARK 465 ILE B 210A REMARK 465 VAL B 210B REMARK 465 ARG B 210C REMARK 465 GLU B 210D REMARK 465 PRO B 210E REMARK 465 GLU B 210F REMARK 465 TYR B 248 REMARK 465 LEU B 249 REMARK 465 THR B 250 REMARK 465 PRO B 251 REMARK 465 GLY B 252 REMARK 465 ASP B 253 REMARK 465 SER B 254 REMARK 465 SER B 255 REMARK 465 SER B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 352 59.19 -96.68 REMARK 500 ASP C 428 30.05 -95.92 REMARK 500 CYS C 525 -53.41 -124.06 REMARK 500 ASP C 571 -1.49 67.03 REMARK 500 PRO C 579 47.66 -83.16 REMARK 500 ASP H 101 -8.66 74.53 REMARK 500 THR L 110 46.93 34.60 REMARK 500 PRO L 142 -159.02 -84.10 REMARK 500 ASN B 81 72.84 -154.24 REMARK 500 THR B 236 -37.69 -130.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34653 RELATED DB: EMDB REMARK 900 SARS-COV-2 OMICRON BA.1 SPIKE TRIMER WITH IN COMPLEX WITH YB9-258 REMARK 900 FAB, FOCUSED REFINEMENT OF FAB REGION DBREF 8HC6 C 322 588 UNP P0DTC2 SPIKE_SARS2 322 588 DBREF 8HC6 H 1 220 PDB 8HC6 8HC6 1 220 DBREF 8HC6 L 1 215 PDB 8HC6 8HC6 1 215 DBREF 8HC6 B 14 289 UNP P0DTC2 SPIKE_SARS2 14 289 SEQADV 8HC6 ASP C 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8HC6 LEU C 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8HC6 PRO C 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8HC6 PHE C 375 UNP P0DTC2 SER 375 VARIANT SEQADV 8HC6 ASN C 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8HC6 LYS C 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8HC6 SER C 446 UNP P0DTC2 GLY 446 VARIANT SEQADV 8HC6 ASN C 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8HC6 LYS C 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8HC6 ALA C 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8HC6 ARG C 493 UNP P0DTC2 GLN 493 VARIANT SEQADV 8HC6 SER C 496 UNP P0DTC2 GLY 496 VARIANT SEQADV 8HC6 ARG C 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8HC6 TYR C 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8HC6 HIS C 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8HC6 LYS C 547 UNP P0DTC2 THR 547 VARIANT SEQADV 8HC6 VAL B 67 UNP P0DTC2 ALA 67 VARIANT SEQADV 8HC6 B UNP P0DTC2 HIS 69 DELETION SEQADV 8HC6 B UNP P0DTC2 VAL 70 DELETION SEQADV 8HC6 ILE B 95 UNP P0DTC2 THR 95 VARIANT SEQADV 8HC6 ASP B 142 UNP P0DTC2 GLY 142 CONFLICT SEQADV 8HC6 B UNP P0DTC2 VAL 143 DELETION SEQADV 8HC6 B UNP P0DTC2 TYR 144 DELETION SEQADV 8HC6 B UNP P0DTC2 TYR 145 DELETION SEQADV 8HC6 ILE B 210A UNP P0DTC2 LEU 212 VARIANT SEQADV 8HC6 GLU B 210D UNP P0DTC2 INSERTION SEQADV 8HC6 PRO B 210E UNP P0DTC2 INSERTION SEQADV 8HC6 GLU B 210F UNP P0DTC2 INSERTION SEQRES 1 C 267 PRO THR GLU SER ILE VAL ARG PHE PRO ASN ILE THR ASN SEQRES 2 C 267 LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA THR ARG PHE SEQRES 3 C 267 ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER ASN SEQRES 4 C 267 CYS VAL ALA ASP TYR SER VAL LEU TYR ASN LEU ALA PRO SEQRES 5 C 267 PHE PHE THR PHE LYS CYS TYR GLY VAL SER PRO THR LYS SEQRES 6 C 267 LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SER SEQRES 7 C 267 PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA PRO SEQRES 8 C 267 GLY GLN THR GLY ASN ILE ALA ASP TYR ASN TYR LYS LEU SEQRES 9 C 267 PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SER SEQRES 10 C 267 ASN LYS LEU ASP SER LYS VAL SER GLY ASN TYR ASN TYR SEQRES 11 C 267 LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS PRO PHE SEQRES 12 C 267 GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY ASN SEQRES 13 C 267 LYS PRO CYS ASN GLY VAL ALA GLY PHE ASN CYS TYR PHE SEQRES 14 C 267 PRO LEU ARG SER TYR SER PHE ARG PRO THR TYR GLY VAL SEQRES 15 C 267 GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER PHE GLU SEQRES 16 C 267 LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO LYS LYS SEQRES 17 C 267 SER THR ASN LEU VAL LYS ASN LYS CYS VAL ASN PHE ASN SEQRES 18 C 267 PHE ASN GLY LEU LYS GLY THR GLY VAL LEU THR GLU SER SEQRES 19 C 267 ASN LYS LYS PHE LEU PRO PHE GLN GLN PHE GLY ARG ASP SEQRES 20 C 267 ILE ALA ASP THR THR ASP ALA VAL ARG ASP PRO GLN THR SEQRES 21 C 267 LEU GLU ILE LEU ASP ILE THR SEQRES 1 H 220 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 220 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 220 LEU THR VAL SER SER ASN TYR MET HIS TRP VAL ARG GLN SEQRES 4 H 220 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL LEU TYR SEQRES 5 H 220 ALA GLY GLY SER ALA PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 220 ARG PHE THR ILE SER ARG ASN ASN SER LYS ASN THR LEU SEQRES 7 H 220 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 220 ILE TYR TYR CYS ALA ARG GLY LEU GLY ASP TYR LEU ASP SEQRES 9 H 220 SER TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 H 220 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 220 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 220 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 220 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 220 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 220 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 220 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 220 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP SEQRES 1 L 215 ASP ILE GLN MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 L 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 215 GLN GLY ILE GLY SER TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY LYS ALA PRO GLN LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 215 THR LEU GLN SER GLY VAL PRO PRO ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLY THR ASP PHE THR LEU THR ILE THR SER LEU SEQRES 7 L 215 GLN PRO GLU ASP PHE ALA SER TYR TYR CYS GLN GLN ALA SEQRES 8 L 215 ASN SER VAL LEU ALA LEU THR PHE GLY GLY GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 273 GLN CYS VAL ASN LEU THR THR ARG THR GLN LEU PRO PRO SEQRES 2 B 273 ALA TYR THR ASN SER PHE THR ARG GLY VAL TYR TYR PRO SEQRES 3 B 273 ASP LYS VAL PHE ARG SER SER VAL LEU HIS SER THR GLN SEQRES 4 B 273 ASP LEU PHE LEU PRO PHE PHE SER ASN VAL THR TRP PHE SEQRES 5 B 273 HIS VAL ILE SER GLY THR ASN GLY THR LYS ARG PHE ASP SEQRES 6 B 273 ASN PRO VAL LEU PRO PHE ASN ASP GLY VAL TYR PHE ALA SEQRES 7 B 273 SER ILE GLU LYS SER ASN ILE ILE ARG GLY TRP ILE PHE SEQRES 8 B 273 GLY THR THR LEU ASP SER LYS THR GLN SER LEU LEU ILE SEQRES 9 B 273 VAL ASN ASN ALA THR ASN VAL VAL ILE LYS VAL CYS GLU SEQRES 10 B 273 PHE GLN PHE CYS ASN ASP PRO PHE LEU ASP HIS LYS ASN SEQRES 11 B 273 ASN LYS SER TRP MET GLU SER GLU PHE ARG VAL TYR SER SEQRES 12 B 273 SER ALA ASN ASN CYS THR PHE GLU TYR VAL SER GLN PRO SEQRES 13 B 273 PHE LEU MET ASP LEU GLU GLY LYS GLN GLY ASN PHE LYS SEQRES 14 B 273 ASN LEU ARG GLU PHE VAL PHE LYS ASN ILE ASP GLY TYR SEQRES 15 B 273 PHE LYS ILE TYR SER LYS HIS THR PRO ILE ILE VAL ARG SEQRES 16 B 273 GLU PRO GLU ASP LEU PRO GLN GLY PHE SER ALA LEU GLU SEQRES 17 B 273 PRO LEU VAL ASP LEU PRO ILE GLY ILE ASN ILE THR ARG SEQRES 18 B 273 PHE GLN THR LEU LEU ALA LEU HIS ARG SER TYR LEU THR SEQRES 19 B 273 PRO GLY ASP SER SER SER GLY TRP THR ALA GLY ALA ALA SEQRES 20 B 273 ALA TYR TYR VAL GLY TYR LEU GLN PRO ARG THR PHE LEU SEQRES 21 B 273 LEU LYS TYR ASN GLU ASN GLY THR ILE THR ASP ALA VAL HET NAG C 601 14 HET NAG C 602 14 HET NAG B1301 14 HET NAG B1302 14 HET NAG B1303 14 HET NAG B1304 14 HET NAG B1305 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 7(C8 H15 N O6) HELIX 1 AA1 PRO C 337 ASN C 343 1 7 HELIX 2 AA2 TYR C 365 ALA C 372 1 8 HELIX 3 AA3 GLY C 404 ARG C 408 1 5 HELIX 4 AA4 GLY C 416 ASN C 422 1 7 HELIX 5 AA5 SER H 159 ALA H 161 5 3 HELIX 6 AA6 PRO H 188 LEU H 192 5 5 HELIX 7 AA7 LYS L 184 GLU L 188 1 5 SHEET 1 AA1 4 LYS C 356 ILE C 358 0 SHEET 2 AA1 4 ASN C 394 ARG C 403 -1 O VAL C 395 N ILE C 358 SHEET 3 AA1 4 PRO C 507 GLU C 516 -1 O VAL C 512 N ASP C 398 SHEET 4 AA1 4 GLY C 431 ASN C 437 -1 N ILE C 434 O VAL C 511 SHEET 1 AA2 2 LEU C 452 ARG C 454 0 SHEET 2 AA2 2 LEU C 492 SER C 494 -1 O ARG C 493 N TYR C 453 SHEET 1 AA3 2 TYR C 473 GLN C 474 0 SHEET 2 AA3 2 CYS C 488 TYR C 489 -1 O TYR C 489 N TYR C 473 SHEET 1 AA4 2 PHE C 541 PHE C 543 0 SHEET 2 AA4 2 LEU C 546 GLY C 548 -1 O GLY C 548 N PHE C 541 SHEET 1 AA5 4 LEU H 4 SER H 7 0 SHEET 2 AA5 4 LEU H 20 ALA H 24 -1 O ALA H 23 N VAL H 5 SHEET 3 AA5 4 THR H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 AA5 4 PHE H 67 ASN H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA6 2 LEU H 11 ILE H 12 0 SHEET 2 AA6 2 THR H 113 VAL H 114 1 O THR H 113 N ILE H 12 SHEET 1 AA7 4 ALA H 57 TYR H 59 0 SHEET 2 AA7 4 LEU H 45 LEU H 51 -1 N VAL H 50 O PHE H 58 SHEET 3 AA7 4 MET H 34 GLN H 39 -1 N MET H 34 O LEU H 51 SHEET 4 AA7 4 ILE H 92 TYR H 93 -1 O ILE H 92 N GLN H 39 SHEET 1 AA8 4 ALA H 57 TYR H 59 0 SHEET 2 AA8 4 LEU H 45 LEU H 51 -1 N VAL H 50 O PHE H 58 SHEET 3 AA8 4 MET H 34 GLN H 39 -1 N MET H 34 O LEU H 51 SHEET 4 AA8 4 ALA H 96 ARG H 97 -1 O ALA H 96 N HIS H 35 SHEET 1 AA9 4 SER H 123 PRO H 126 0 SHEET 2 AA9 4 ALA H 139 LYS H 146 -1 O LEU H 144 N PHE H 125 SHEET 3 AA9 4 TYR H 179 VAL H 187 -1 O VAL H 185 N LEU H 141 SHEET 4 AA9 4 HIS H 167 THR H 168 -1 N HIS H 167 O VAL H 184 SHEET 1 AB1 4 SER H 123 PRO H 126 0 SHEET 2 AB1 4 ALA H 139 LYS H 146 -1 O LEU H 144 N PHE H 125 SHEET 3 AB1 4 TYR H 179 VAL H 187 -1 O VAL H 185 N LEU H 141 SHEET 4 AB1 4 VAL H 172 LEU H 173 -1 N VAL H 172 O SER H 180 SHEET 1 AB2 3 THR H 154 TRP H 157 0 SHEET 2 AB2 3 ILE H 198 ASN H 202 -1 O ASN H 200 N SER H 156 SHEET 3 AB2 3 VAL H 210 LYS H 213 -1 O LYS H 212 N CYS H 199 SHEET 1 AB3 3 MET L 4 THR L 5 0 SHEET 2 AB3 3 THR L 22 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB3 3 ASP L 70 THR L 72 -1 O PHE L 71 N CYS L 23 SHEET 1 AB4 2 SER L 10 SER L 12 0 SHEET 2 AB4 2 LYS L 104 GLU L 106 1 O GLU L 106 N VAL L 11 SHEET 1 AB5 5 THR L 53 LEU L 54 0 SHEET 2 AB5 5 GLN L 45 TYR L 49 -1 N TYR L 49 O THR L 53 SHEET 3 AB5 5 ALA L 34 GLN L 38 -1 N GLN L 37 O GLN L 45 SHEET 4 AB5 5 SER L 85 GLN L 90 -1 O GLN L 89 N ALA L 34 SHEET 5 AB5 5 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 90 SHEET 1 AB6 4 PHE L 117 PHE L 119 0 SHEET 2 AB6 4 THR L 130 ASN L 138 -1 O VAL L 134 N PHE L 119 SHEET 3 AB6 4 SER L 175 SER L 183 -1 O LEU L 176 N LEU L 137 SHEET 4 AB6 4 SER L 160 VAL L 164 -1 N SER L 163 O SER L 177 SHEET 1 AB7 2 TRP L 149 VAL L 151 0 SHEET 2 AB7 2 ALA L 154 GLN L 156 -1 O ALA L 154 N VAL L 151 SHEET 1 AB8 2 VAL L 192 TYR L 193 0 SHEET 2 AB8 2 PHE L 210 ASN L 211 -1 O PHE L 210 N TYR L 193 SHEET 1 AB9 7 ALA B 27 ASN B 30 0 SHEET 2 AB9 7 ASN B 61 VAL B 67 -1 O TRP B 64 N ALA B 27 SHEET 3 AB9 7 ALA B 263 TYR B 269 -1 O ALA B 263 N VAL B 67 SHEET 4 AB9 7 VAL B 90 ILE B 95 -1 N ALA B 93 O TYR B 266 SHEET 5 AB9 7 ASN B 188 ILE B 197 -1 O PHE B 192 N PHE B 92 SHEET 6 AB9 7 TYR B 200 PRO B 209 -1 O THR B 208 N LEU B 189 SHEET 7 AB9 7 GLU B 224 VAL B 227 -1 O VAL B 227 N ILE B 203 SHEET 1 AC1 2 LEU B 48 GLN B 52 0 SHEET 2 AC1 2 THR B 274 LYS B 278 -1 O LEU B 277 N HIS B 49 SHEET 1 AC2 6 PHE B 140 LEU B 141 0 SHEET 2 AC2 6 GLN B 239 ALA B 243 1 O LEU B 242 N LEU B 141 SHEET 3 AC2 6 ILE B 101 GLY B 107 -1 N ILE B 105 O GLN B 239 SHEET 4 AC2 6 SER B 116 ASN B 121 -1 O LEU B 117 N PHE B 106 SHEET 5 AC2 6 VAL B 126 VAL B 130 -1 O VAL B 127 N VAL B 120 SHEET 6 AC2 6 THR B 167 SER B 172 -1 O TYR B 170 N ILE B 128 SSBOND 1 CYS C 336 CYS C 361 1555 1555 2.03 SSBOND 2 CYS C 379 CYS C 432 1555 1555 2.03 SSBOND 3 CYS C 391 CYS C 525 1555 1555 2.04 SSBOND 4 CYS C 480 CYS C 488 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 95 1555 1555 2.03 SSBOND 6 CYS H 143 CYS H 199 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 8 CYS L 135 CYS L 195 1555 1555 2.03 SSBOND 9 CYS B 15 CYS B 136 1555 1555 2.03 SSBOND 10 CYS B 131 CYS B 166 1555 1555 2.03 LINK ND2 ASN C 331 C1 NAG C 601 1555 1555 1.44 LINK ND2 ASN C 343 C1 NAG C 602 1555 1555 1.44 LINK ND2 ASN B 61 C1 NAG B1301 1555 1555 1.45 LINK ND2 ASN B 122 C1 NAG B1302 1555 1555 1.44 LINK ND2 ASN B 165 C1 NAG B1303 1555 1555 1.46 LINK ND2 ASN B 234 C1 NAG B1304 1555 1555 1.45 LINK ND2 ASN B 282 C1 NAG B1305 1555 1555 1.45 CISPEP 1 PHE H 149 PRO H 150 0 -6.04 CISPEP 2 GLU H 151 PRO H 152 0 -2.86 CISPEP 3 TYR L 141 PRO L 142 0 1.49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 81 7284 CONECT 118 329 CONECT 179 7298 CONECT 329 118 CONECT 477 889 CONECT 567 1643 CONECT 889 477 CONECT 1287 1340 CONECT 1340 1287 CONECT 1643 567 CONECT 2287 2856 CONECT 2856 2287 CONECT 3145 3559 CONECT 3559 3145 CONECT 3887 4382 CONECT 4382 3887 CONECT 4722 5201 CONECT 5201 4722 CONECT 5368 6290 CONECT 5746 7312 CONECT 6180 7326 CONECT 6244 6452 CONECT 6290 5368 CONECT 6446 7340 CONECT 6452 6244 CONECT 6916 7354 CONECT 7236 7368 CONECT 7284 81 7285 7295 CONECT 7285 7284 7286 7292 CONECT 7286 7285 7287 7293 CONECT 7287 7286 7288 7294 CONECT 7288 7287 7289 7295 CONECT 7289 7288 7296 CONECT 7290 7291 7292 7297 CONECT 7291 7290 CONECT 7292 7285 7290 CONECT 7293 7286 CONECT 7294 7287 CONECT 7295 7284 7288 CONECT 7296 7289 CONECT 7297 7290 CONECT 7298 179 7299 7309 CONECT 7299 7298 7300 7306 CONECT 7300 7299 7301 7307 CONECT 7301 7300 7302 7308 CONECT 7302 7301 7303 7309 CONECT 7303 7302 7310 CONECT 7304 7305 7306 7311 CONECT 7305 7304 CONECT 7306 7299 7304 CONECT 7307 7300 CONECT 7308 7301 CONECT 7309 7298 7302 CONECT 7310 7303 CONECT 7311 7304 CONECT 7312 5746 7313 7323 CONECT 7313 7312 7314 7320 CONECT 7314 7313 7315 7321 CONECT 7315 7314 7316 7322 CONECT 7316 7315 7317 7323 CONECT 7317 7316 7324 CONECT 7318 7319 7320 7325 CONECT 7319 7318 CONECT 7320 7313 7318 CONECT 7321 7314 CONECT 7322 7315 CONECT 7323 7312 7316 CONECT 7324 7317 CONECT 7325 7318 CONECT 7326 6180 7327 7337 CONECT 7327 7326 7328 7334 CONECT 7328 7327 7329 7335 CONECT 7329 7328 7330 7336 CONECT 7330 7329 7331 7337 CONECT 7331 7330 7338 CONECT 7332 7333 7334 7339 CONECT 7333 7332 CONECT 7334 7327 7332 CONECT 7335 7328 CONECT 7336 7329 CONECT 7337 7326 7330 CONECT 7338 7331 CONECT 7339 7332 CONECT 7340 6446 7341 7351 CONECT 7341 7340 7342 7348 CONECT 7342 7341 7343 7349 CONECT 7343 7342 7344 7350 CONECT 7344 7343 7345 7351 CONECT 7345 7344 7352 CONECT 7346 7347 7348 7353 CONECT 7347 7346 CONECT 7348 7341 7346 CONECT 7349 7342 CONECT 7350 7343 CONECT 7351 7340 7344 CONECT 7352 7345 CONECT 7353 7346 CONECT 7354 6916 7355 7365 CONECT 7355 7354 7356 7362 CONECT 7356 7355 7357 7363 CONECT 7357 7356 7358 7364 CONECT 7358 7357 7359 7365 CONECT 7359 7358 7366 CONECT 7360 7361 7362 7367 CONECT 7361 7360 CONECT 7362 7355 7360 CONECT 7363 7356 CONECT 7364 7357 CONECT 7365 7354 7358 CONECT 7366 7359 CONECT 7367 7360 CONECT 7368 7236 7369 7379 CONECT 7369 7368 7370 7376 CONECT 7370 7369 7371 7377 CONECT 7371 7370 7372 7378 CONECT 7372 7371 7373 7379 CONECT 7373 7372 7380 CONECT 7374 7375 7376 7381 CONECT 7375 7374 CONECT 7376 7369 7374 CONECT 7377 7370 CONECT 7378 7371 CONECT 7379 7368 7372 CONECT 7380 7373 CONECT 7381 7374 MASTER 178 0 7 7 68 0 0 6 7377 4 125 76 END