HEADER DNA BINDING PROTEIN/DNA 02-NOV-22 8HCM TITLE ZEBRAFISH IRF-11 DBD COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON REGULATORY FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*AP*GP*AP*AP*AP*GP*TP*GP*AP*AP*AP*GP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(P*GP*CP*TP*TP*TP*CP*AP*CP*TP*TP*TP*CP*TP*A)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: IRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ZEBRAFISH, IRF, DBD, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.X.WANG,Y.A.ZHANG,S.Y.OUYANG REVDAT 3 04-SEP-24 8HCM 1 JRNL REVDAT 2 07-AUG-24 8HCM 1 JRNL REVDAT 1 15-MAY-24 8HCM 0 JRNL AUTH Z.X.WANG,B.LIU,H.XIE,X.LIU,X.LI,F.SHI,S.OUYANG,Y.A.ZHANG JRNL TITL CRYSTAL STRUCTURES OF DNA-BOUND FISH IRF10 AND IRF11 REVEAL JRNL TITL 2 THE DETERMINANTS OF IFN REGULATION. JRNL REF J IMMUNOL. V. 213 743 2024 JRNL REFN ESSN 1550-6606 JRNL PMID 39058321 JRNL DOI 10.4049/JIMMUNOL.2300414 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 12838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2700 - 5.3900 0.98 1399 153 0.2151 0.2759 REMARK 3 2 5.3900 - 4.2800 1.00 1427 159 0.1994 0.2174 REMARK 3 3 4.2800 - 3.7400 1.00 1423 166 0.1949 0.2254 REMARK 3 4 3.7400 - 3.4000 1.00 1405 156 0.2127 0.2390 REMARK 3 5 3.4000 - 3.1600 1.00 1442 160 0.2408 0.3128 REMARK 3 6 3.1600 - 2.9700 1.00 1412 161 0.2851 0.3846 REMARK 3 7 2.9700 - 2.8200 0.94 1345 146 0.3061 0.3519 REMARK 3 8 2.8200 - 2.7000 0.75 1058 119 0.3846 0.3958 REMARK 3 9 2.7000 - 2.5900 0.44 632 75 0.2914 0.3955 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.344 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.855 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1506 REMARK 3 ANGLE : 1.300 2155 REMARK 3 CHIRALITY : 0.077 229 REMARK 3 PLANARITY : 0.023 178 REMARK 3 DIHEDRAL : 33.359 381 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1253 5.3686 8.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.7804 T22: 0.1938 REMARK 3 T33: 0.3721 T12: 0.0492 REMARK 3 T13: -0.0912 T23: 0.0651 REMARK 3 L TENSOR REMARK 3 L11: 8.3624 L22: 4.2235 REMARK 3 L33: 5.8786 L12: 0.3497 REMARK 3 L13: 1.6288 L23: -1.3697 REMARK 3 S TENSOR REMARK 3 S11: 0.4104 S12: -0.1482 S13: -0.8431 REMARK 3 S21: -1.0396 S22: 0.1735 S23: 0.3477 REMARK 3 S31: 1.3005 S32: 0.0098 S33: -0.4556 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1746 10.8294 5.9208 REMARK 3 T TENSOR REMARK 3 T11: 0.7365 T22: 0.5587 REMARK 3 T33: 0.5652 T12: 0.0089 REMARK 3 T13: -0.2501 T23: 0.3613 REMARK 3 L TENSOR REMARK 3 L11: 9.3726 L22: 7.4769 REMARK 3 L33: 9.6605 L12: -4.8988 REMARK 3 L13: 7.2981 L23: 0.6060 REMARK 3 S TENSOR REMARK 3 S11: 0.4463 S12: -0.1758 S13: -0.5414 REMARK 3 S21: -0.3711 S22: 0.3943 S23: 0.8534 REMARK 3 S31: 0.9837 S32: -1.4973 S33: -0.8092 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4500 4.8091 -4.3124 REMARK 3 T TENSOR REMARK 3 T11: 1.3773 T22: 0.4932 REMARK 3 T33: 0.6436 T12: 0.1585 REMARK 3 T13: -0.0583 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.2337 L22: 2.5814 REMARK 3 L33: 9.1710 L12: 2.2261 REMARK 3 L13: 0.3888 L23: -2.6516 REMARK 3 S TENSOR REMARK 3 S11: 0.1902 S12: 0.7416 S13: -1.4483 REMARK 3 S21: -1.4698 S22: -0.2814 S23: -0.3510 REMARK 3 S31: 1.9405 S32: 0.3946 S33: -0.1950 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2116 19.5101 7.7358 REMARK 3 T TENSOR REMARK 3 T11: 0.8329 T22: 0.2499 REMARK 3 T33: 0.5021 T12: 0.4404 REMARK 3 T13: 0.0544 T23: 0.3306 REMARK 3 L TENSOR REMARK 3 L11: 0.1421 L22: 1.3481 REMARK 3 L33: 1.4956 L12: 0.4216 REMARK 3 L13: -0.1961 L23: -1.0243 REMARK 3 S TENSOR REMARK 3 S11: 0.3969 S12: 0.3154 S13: 0.3282 REMARK 3 S21: -0.5107 S22: 0.2793 S23: 0.8169 REMARK 3 S31: -0.4143 S32: -0.9476 S33: -0.1965 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5179 19.9209 16.1895 REMARK 3 T TENSOR REMARK 3 T11: 0.7445 T22: -0.0120 REMARK 3 T33: 0.4630 T12: 0.3802 REMARK 3 T13: 0.3203 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.3546 L22: 0.6310 REMARK 3 L33: 0.8409 L12: -0.0470 REMARK 3 L13: -0.2795 L23: -0.5383 REMARK 3 S TENSOR REMARK 3 S11: 0.2687 S12: -0.1625 S13: 0.2767 REMARK 3 S21: 0.0296 S22: 0.1549 S23: -0.0415 REMARK 3 S31: -0.4280 S32: 0.0504 S33: 0.0799 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0726 14.2802 -1.3357 REMARK 3 T TENSOR REMARK 3 T11: 1.0081 T22: 0.2715 REMARK 3 T33: 0.3667 T12: 0.3546 REMARK 3 T13: 0.2063 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 3.4030 L22: 5.0713 REMARK 3 L33: 0.3323 L12: 0.1099 REMARK 3 L13: -0.7429 L23: 0.8957 REMARK 3 S TENSOR REMARK 3 S11: 0.2277 S12: 0.3230 S13: 0.4774 REMARK 3 S21: -1.3081 S22: 0.2246 S23: -0.3604 REMARK 3 S31: 0.0261 S32: 0.3019 S33: -0.3988 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3352 13.6338 -1.3299 REMARK 3 T TENSOR REMARK 3 T11: 0.8421 T22: 0.5422 REMARK 3 T33: 0.3210 T12: 0.2412 REMARK 3 T13: 0.1344 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 7.0666 L22: 5.1978 REMARK 3 L33: 6.6326 L12: -1.6646 REMARK 3 L13: 0.4369 L23: 2.0399 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: 0.2638 S13: -0.2592 REMARK 3 S21: -0.6656 S22: 0.3129 S23: -0.0152 REMARK 3 S31: -0.0108 S32: 0.0455 S33: -0.2534 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6094 31.8547 8.8366 REMARK 3 T TENSOR REMARK 3 T11: 1.1896 T22: 0.2721 REMARK 3 T33: 0.8283 T12: -0.0266 REMARK 3 T13: 0.3719 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 1.3486 L22: 4.3652 REMARK 3 L33: 2.8940 L12: -0.2217 REMARK 3 L13: -0.1778 L23: -1.8072 REMARK 3 S TENSOR REMARK 3 S11: 0.2372 S12: 0.0147 S13: 1.0879 REMARK 3 S21: -0.0654 S22: -0.1423 S23: -0.5124 REMARK 3 S31: -1.3238 S32: 0.3725 S33: 0.2678 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3839 28.3849 9.4953 REMARK 3 T TENSOR REMARK 3 T11: 1.2330 T22: 0.3994 REMARK 3 T33: 0.6669 T12: 0.0166 REMARK 3 T13: 0.3794 T23: 0.0596 REMARK 3 L TENSOR REMARK 3 L11: 2.0528 L22: 4.2283 REMARK 3 L33: 3.6894 L12: -2.4878 REMARK 3 L13: 2.6344 L23: -3.2045 REMARK 3 S TENSOR REMARK 3 S11: 0.3490 S12: 0.2062 S13: 0.7931 REMARK 3 S21: -0.3005 S22: -0.1014 S23: -0.5214 REMARK 3 S31: -1.2935 S32: 0.2767 S33: 0.1131 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 14 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0754 41.3867 0.8383 REMARK 3 T TENSOR REMARK 3 T11: 2.0896 T22: 0.9880 REMARK 3 T33: 1.7541 T12: 0.6602 REMARK 3 T13: 0.6226 T23: 0.4193 REMARK 3 L TENSOR REMARK 3 L11: 0.7616 L22: 1.1307 REMARK 3 L33: 0.0925 L12: -0.9280 REMARK 3 L13: -0.2654 L23: 0.3233 REMARK 3 S TENSOR REMARK 3 S11: 0.1374 S12: -0.0579 S13: 0.0053 REMARK 3 S21: -0.2538 S22: 0.1605 S23: 0.2808 REMARK 3 S31: -0.0763 S32: -0.1026 S33: -0.2685 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 298.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 30.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: 2IRF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM/POTASSIUM PHOSPHATE PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.35133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.70267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.02700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 183.37833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.67567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.35133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 146.70267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 183.37833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.02700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.67567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 93 REMARK 465 SER A 94 REMARK 465 ILE A 95 REMARK 465 LYS A 96 REMARK 465 LYS A 97 REMARK 465 GLY A 98 REMARK 465 HIS A 99 REMARK 465 ASN A 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 69 OG1 THR A 72 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 9 NH2 ARG A 28 8555 0.69 REMARK 500 CD GLU A 9 NH2 ARG A 28 8555 1.46 REMARK 500 OE2 GLU A 9 CZ ARG A 28 8555 1.93 REMARK 500 NE2 GLN A 13 NE2 GLN A 13 8555 1.97 REMARK 500 OE1 GLU A 9 NH2 ARG A 28 8555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 O3' DC C 2 P -0.106 REMARK 500 DC C 8 O3' DC C 8 C3' -0.037 REMARK 500 DC C 12 O3' DT C 13 P -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 8 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA C 14 O5' - P - OP1 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 3 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8HCM A 3 108 UNP Q1RLP9 Q1RLP9_DANRE 7 112 DBREF 8HCM B 1 14 PDB 8HCM 8HCM 1 14 DBREF 8HCM C 1 14 PDB 8HCM 8HCM 1 14 SEQADV 8HCM GLN A 1 UNP Q1RLP9 EXPRESSION TAG SEQADV 8HCM CYS A 2 UNP Q1RLP9 EXPRESSION TAG SEQRES 1 A 108 GLN CYS ARG LEU ARG PRO TRP LEU GLU GLU GLN ILE GLN SEQRES 2 A 108 SER GLY ARG TYR PRO GLY VAL GLN TRP LEU ASP GLN SER SEQRES 3 A 108 ALA ARG VAL PHE GLN ILE PRO TRP LYS HIS ALA ALA ARG SEQRES 4 A 108 HIS GLY TRP ASN ILE ASP LYS ASP ALA THR LEU PHE ARG SEQRES 5 A 108 ASN TRP ALA ILE HIS THR GLY ARG TYR LYS PRO GLY ILE SEQRES 6 A 108 ASP LYS PRO ASP PRO LYS THR TRP LYS ALA ASN PHE ARG SEQRES 7 A 108 CYS ALA LEU ASN SER LEU THR ASP VAL LYS GLU LEU GLN SEQRES 8 A 108 ASP ARG SER ILE LYS LYS GLY HIS ASN ALA PHE ARG VAL SEQRES 9 A 108 TYR ALA LEU LEU SEQRES 1 B 14 DT DA DG DA DA DA DG DT DG DA DA DA DG SEQRES 2 B 14 DC SEQRES 1 C 14 DG DC DT DT DT DC DA DC DT DT DT DC DT SEQRES 2 C 14 DA FORMUL 4 HOH *6(H2 O) HELIX 1 AA1 ARG A 3 GLY A 15 1 13 HELIX 2 AA2 ASN A 43 ALA A 48 1 6 HELIX 3 AA3 ALA A 48 THR A 58 1 11 HELIX 4 AA4 ASP A 69 LEU A 84 1 16 SHEET 1 AA1 4 GLN A 21 ASP A 24 0 SHEET 2 AA1 4 VAL A 29 PRO A 33 -1 O VAL A 29 N LEU A 23 SHEET 3 AA1 4 PHE A 102 LEU A 107 -1 O TYR A 105 N PHE A 30 SHEET 4 AA1 4 VAL A 87 GLU A 89 -1 N LYS A 88 O ALA A 106 CRYST1 61.118 61.118 220.054 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016362 0.009446 0.000000 0.00000 SCALE2 0.000000 0.018893 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004544 0.00000