HEADER MEMBRANE PROTEIN 09-NOV-22 8HF2 TITLE CRYO-EM STRUCTURE OF WEITSING COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRA1 FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: WEITSING; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AN1_LOCUS3247, C24_LOCUS3162; SOURCE 6 EXPRESSION_SYSTEM: SCHIZOSACCHAROMYCES POMBE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4896 KEYWDS PENTAMER, CHANNEL, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.QIN,L.H.TANG,Y.H.CHEN REVDAT 2 03-JUL-24 8HF2 1 REMARK REVDAT 1 21-JUN-23 8HF2 0 JRNL AUTH W.WANG,L.QIN,W.ZHANG,L.TANG,C.ZHANG,X.DONG,P.MIAO,M.SHEN, JRNL AUTH 2 H.DU,H.CHENG,K.WANG,X.ZHANG,M.SU,H.LU,C.LI,Q.GAO,X.ZHANG, JRNL AUTH 3 Y.HUANG,C.LIANG,J.M.ZHOU,Y.H.CHEN JRNL TITL WEITSING, A PERICYCLE-EXPRESSED ION CHANNEL, SAFEGUARDS THE JRNL TITL 2 STELE TO CONFER CLUBROOT RESISTANCE. JRNL REF CELL V. 186 2656 2023 JRNL REFN ISSN 1097-4172 JRNL PMID 37295403 JRNL DOI 10.1016/J.CELL.2023.05.023 REMARK 2 REMARK 2 RESOLUTION. 4.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.140 REMARK 3 NUMBER OF PARTICLES : 117360 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8HF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033450. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : WEITSING REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 GLN A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 ILE A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 SER A 139 REMARK 465 ALA A 140 REMARK 465 CYS A 141 REMARK 465 PRO A 142 REMARK 465 PRO A 143 REMARK 465 GLN A 144 REMARK 465 LEU A 145 REMARK 465 PRO A 146 REMARK 465 PRO A 147 REMARK 465 VAL A 148 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 VAL B 7 REMARK 465 ASN B 8 REMARK 465 GLN B 9 REMARK 465 THR B 10 REMARK 465 LEU B 11 REMARK 465 PRO B 12 REMARK 465 ILE B 13 REMARK 465 SER B 14 REMARK 465 GLY B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 PRO B 18 REMARK 465 SER B 139 REMARK 465 ALA B 140 REMARK 465 CYS B 141 REMARK 465 PRO B 142 REMARK 465 PRO B 143 REMARK 465 GLN B 144 REMARK 465 LEU B 145 REMARK 465 PRO B 146 REMARK 465 PRO B 147 REMARK 465 VAL B 148 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 THR C 3 REMARK 465 VAL C 4 REMARK 465 SER C 5 REMARK 465 ALA C 6 REMARK 465 VAL C 7 REMARK 465 ASN C 8 REMARK 465 GLN C 9 REMARK 465 THR C 10 REMARK 465 LEU C 11 REMARK 465 PRO C 12 REMARK 465 ILE C 13 REMARK 465 SER C 14 REMARK 465 GLY C 15 REMARK 465 GLY C 16 REMARK 465 GLU C 17 REMARK 465 PRO C 18 REMARK 465 SER C 139 REMARK 465 ALA C 140 REMARK 465 CYS C 141 REMARK 465 PRO C 142 REMARK 465 PRO C 143 REMARK 465 GLN C 144 REMARK 465 LEU C 145 REMARK 465 PRO C 146 REMARK 465 PRO C 147 REMARK 465 VAL C 148 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 THR D 3 REMARK 465 VAL D 4 REMARK 465 SER D 5 REMARK 465 ALA D 6 REMARK 465 VAL D 7 REMARK 465 ASN D 8 REMARK 465 GLN D 9 REMARK 465 THR D 10 REMARK 465 LEU D 11 REMARK 465 PRO D 12 REMARK 465 ILE D 13 REMARK 465 SER D 14 REMARK 465 GLY D 15 REMARK 465 GLY D 16 REMARK 465 GLU D 17 REMARK 465 PRO D 18 REMARK 465 SER D 139 REMARK 465 ALA D 140 REMARK 465 CYS D 141 REMARK 465 PRO D 142 REMARK 465 PRO D 143 REMARK 465 GLN D 144 REMARK 465 LEU D 145 REMARK 465 PRO D 146 REMARK 465 PRO D 147 REMARK 465 VAL D 148 REMARK 465 MET E 1 REMARK 465 GLU E 2 REMARK 465 THR E 3 REMARK 465 VAL E 4 REMARK 465 SER E 5 REMARK 465 ALA E 6 REMARK 465 VAL E 7 REMARK 465 ASN E 8 REMARK 465 GLN E 9 REMARK 465 THR E 10 REMARK 465 LEU E 11 REMARK 465 PRO E 12 REMARK 465 ILE E 13 REMARK 465 SER E 14 REMARK 465 GLY E 15 REMARK 465 GLY E 16 REMARK 465 GLU E 17 REMARK 465 PRO E 18 REMARK 465 SER E 139 REMARK 465 ALA E 140 REMARK 465 CYS E 141 REMARK 465 PRO E 142 REMARK 465 PRO E 143 REMARK 465 GLN E 144 REMARK 465 LEU E 145 REMARK 465 PRO E 146 REMARK 465 PRO E 147 REMARK 465 VAL E 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 46 -68.94 -98.94 REMARK 500 HIS A 56 14.89 57.41 REMARK 500 VAL B 46 -68.81 -99.00 REMARK 500 HIS B 56 14.96 57.32 REMARK 500 VAL C 46 -68.89 -98.90 REMARK 500 HIS C 56 14.97 57.38 REMARK 500 VAL D 46 -68.81 -98.98 REMARK 500 HIS D 56 14.86 57.45 REMARK 500 VAL E 46 -68.80 -98.97 REMARK 500 HIS E 56 14.87 57.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34710 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF WEITSING DBREF1 8HF2 A 1 148 UNP A0A654EJS8_ARATH DBREF2 8HF2 A A0A654EJS8 1 148 DBREF1 8HF2 B 1 148 UNP A0A654EJS8_ARATH DBREF2 8HF2 B A0A654EJS8 1 148 DBREF1 8HF2 C 1 148 UNP A0A654EJS8_ARATH DBREF2 8HF2 C A0A654EJS8 1 148 DBREF1 8HF2 D 1 148 UNP A0A654EJS8_ARATH DBREF2 8HF2 D A0A654EJS8 1 148 DBREF1 8HF2 E 1 148 UNP A0A654EJS8_ARATH DBREF2 8HF2 E A0A654EJS8 1 148 SEQRES 1 A 148 MET GLU THR VAL SER ALA VAL ASN GLN THR LEU PRO ILE SEQRES 2 A 148 SER GLY GLY GLU PRO VAL LYS PHE THR THR TYR SER ALA SEQRES 3 A 148 ALA VAL HIS LYS VAL LEU VAL MET VAL ASN ALA GLY ILE SEQRES 4 A 148 LEU GLY LEU LEU GLN LEU VAL SER GLN GLN SER SER VAL SEQRES 5 A 148 LEU GLU THR HIS LYS ALA ALA PHE LEU CYS PHE CYS VAL SEQRES 6 A 148 PHE ILE LEU PHE TYR ALA VAL LEU ARG VAL ARG GLU ALA SEQRES 7 A 148 MET ASP VAL ARG LEU GLN PRO GLY LEU VAL PRO ARG LEU SEQRES 8 A 148 ILE GLY HIS GLY SER HIS LEU PHE GLY GLY LEU ALA ALA SEQRES 9 A 148 LEU VAL LEU VAL SER VAL VAL SER THR ALA PHE SER ILE SEQRES 10 A 148 VAL LEU PHE LEU LEU TRP PHE ILE TRP LEU SER ALA VAL SEQRES 11 A 148 VAL TYR LEU GLU THR ASN LYS PRO SER ALA CYS PRO PRO SEQRES 12 A 148 GLN LEU PRO PRO VAL SEQRES 1 B 148 MET GLU THR VAL SER ALA VAL ASN GLN THR LEU PRO ILE SEQRES 2 B 148 SER GLY GLY GLU PRO VAL LYS PHE THR THR TYR SER ALA SEQRES 3 B 148 ALA VAL HIS LYS VAL LEU VAL MET VAL ASN ALA GLY ILE SEQRES 4 B 148 LEU GLY LEU LEU GLN LEU VAL SER GLN GLN SER SER VAL SEQRES 5 B 148 LEU GLU THR HIS LYS ALA ALA PHE LEU CYS PHE CYS VAL SEQRES 6 B 148 PHE ILE LEU PHE TYR ALA VAL LEU ARG VAL ARG GLU ALA SEQRES 7 B 148 MET ASP VAL ARG LEU GLN PRO GLY LEU VAL PRO ARG LEU SEQRES 8 B 148 ILE GLY HIS GLY SER HIS LEU PHE GLY GLY LEU ALA ALA SEQRES 9 B 148 LEU VAL LEU VAL SER VAL VAL SER THR ALA PHE SER ILE SEQRES 10 B 148 VAL LEU PHE LEU LEU TRP PHE ILE TRP LEU SER ALA VAL SEQRES 11 B 148 VAL TYR LEU GLU THR ASN LYS PRO SER ALA CYS PRO PRO SEQRES 12 B 148 GLN LEU PRO PRO VAL SEQRES 1 C 148 MET GLU THR VAL SER ALA VAL ASN GLN THR LEU PRO ILE SEQRES 2 C 148 SER GLY GLY GLU PRO VAL LYS PHE THR THR TYR SER ALA SEQRES 3 C 148 ALA VAL HIS LYS VAL LEU VAL MET VAL ASN ALA GLY ILE SEQRES 4 C 148 LEU GLY LEU LEU GLN LEU VAL SER GLN GLN SER SER VAL SEQRES 5 C 148 LEU GLU THR HIS LYS ALA ALA PHE LEU CYS PHE CYS VAL SEQRES 6 C 148 PHE ILE LEU PHE TYR ALA VAL LEU ARG VAL ARG GLU ALA SEQRES 7 C 148 MET ASP VAL ARG LEU GLN PRO GLY LEU VAL PRO ARG LEU SEQRES 8 C 148 ILE GLY HIS GLY SER HIS LEU PHE GLY GLY LEU ALA ALA SEQRES 9 C 148 LEU VAL LEU VAL SER VAL VAL SER THR ALA PHE SER ILE SEQRES 10 C 148 VAL LEU PHE LEU LEU TRP PHE ILE TRP LEU SER ALA VAL SEQRES 11 C 148 VAL TYR LEU GLU THR ASN LYS PRO SER ALA CYS PRO PRO SEQRES 12 C 148 GLN LEU PRO PRO VAL SEQRES 1 D 148 MET GLU THR VAL SER ALA VAL ASN GLN THR LEU PRO ILE SEQRES 2 D 148 SER GLY GLY GLU PRO VAL LYS PHE THR THR TYR SER ALA SEQRES 3 D 148 ALA VAL HIS LYS VAL LEU VAL MET VAL ASN ALA GLY ILE SEQRES 4 D 148 LEU GLY LEU LEU GLN LEU VAL SER GLN GLN SER SER VAL SEQRES 5 D 148 LEU GLU THR HIS LYS ALA ALA PHE LEU CYS PHE CYS VAL SEQRES 6 D 148 PHE ILE LEU PHE TYR ALA VAL LEU ARG VAL ARG GLU ALA SEQRES 7 D 148 MET ASP VAL ARG LEU GLN PRO GLY LEU VAL PRO ARG LEU SEQRES 8 D 148 ILE GLY HIS GLY SER HIS LEU PHE GLY GLY LEU ALA ALA SEQRES 9 D 148 LEU VAL LEU VAL SER VAL VAL SER THR ALA PHE SER ILE SEQRES 10 D 148 VAL LEU PHE LEU LEU TRP PHE ILE TRP LEU SER ALA VAL SEQRES 11 D 148 VAL TYR LEU GLU THR ASN LYS PRO SER ALA CYS PRO PRO SEQRES 12 D 148 GLN LEU PRO PRO VAL SEQRES 1 E 148 MET GLU THR VAL SER ALA VAL ASN GLN THR LEU PRO ILE SEQRES 2 E 148 SER GLY GLY GLU PRO VAL LYS PHE THR THR TYR SER ALA SEQRES 3 E 148 ALA VAL HIS LYS VAL LEU VAL MET VAL ASN ALA GLY ILE SEQRES 4 E 148 LEU GLY LEU LEU GLN LEU VAL SER GLN GLN SER SER VAL SEQRES 5 E 148 LEU GLU THR HIS LYS ALA ALA PHE LEU CYS PHE CYS VAL SEQRES 6 E 148 PHE ILE LEU PHE TYR ALA VAL LEU ARG VAL ARG GLU ALA SEQRES 7 E 148 MET ASP VAL ARG LEU GLN PRO GLY LEU VAL PRO ARG LEU SEQRES 8 E 148 ILE GLY HIS GLY SER HIS LEU PHE GLY GLY LEU ALA ALA SEQRES 9 E 148 LEU VAL LEU VAL SER VAL VAL SER THR ALA PHE SER ILE SEQRES 10 E 148 VAL LEU PHE LEU LEU TRP PHE ILE TRP LEU SER ALA VAL SEQRES 11 E 148 VAL TYR LEU GLU THR ASN LYS PRO SER ALA CYS PRO PRO SEQRES 12 E 148 GLN LEU PRO PRO VAL HELIX 1 AA1 VAL A 19 LEU A 43 1 25 HELIX 2 AA2 GLN A 44 VAL A 46 5 3 HELIX 3 AA3 HIS A 56 ASP A 80 1 25 HELIX 4 AA4 GLY A 86 VAL A 110 1 25 HELIX 5 AA5 THR A 113 ASN A 136 1 24 HELIX 6 AA6 LYS B 20 LEU B 43 1 24 HELIX 7 AA7 GLN B 44 VAL B 46 5 3 HELIX 8 AA8 HIS B 56 ASP B 80 1 25 HELIX 9 AA9 GLY B 86 VAL B 110 1 25 HELIX 10 AB1 THR B 113 ASN B 136 1 24 HELIX 11 AB2 LYS C 20 LEU C 43 1 24 HELIX 12 AB3 GLN C 44 VAL C 46 5 3 HELIX 13 AB4 HIS C 56 ASP C 80 1 25 HELIX 14 AB5 GLY C 86 VAL C 110 1 25 HELIX 15 AB6 THR C 113 ASN C 136 1 24 HELIX 16 AB7 LYS D 20 LEU D 43 1 24 HELIX 17 AB8 GLN D 44 VAL D 46 5 3 HELIX 18 AB9 HIS D 56 ASP D 80 1 25 HELIX 19 AC1 GLY D 86 VAL D 110 1 25 HELIX 20 AC2 THR D 113 ASN D 136 1 24 HELIX 21 AC3 LYS E 20 LEU E 43 1 24 HELIX 22 AC4 GLN E 44 VAL E 46 5 3 HELIX 23 AC5 HIS E 56 ASP E 80 1 25 HELIX 24 AC6 GLY E 86 VAL E 110 1 25 HELIX 25 AC7 THR E 113 ASN E 136 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000