data_8HHK # _entry.id 8HHK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8HHK pdb_00008hhk 10.2210/pdb8hhk/pdb WWPDB D_1300033630 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8HHK _pdbx_database_status.recvd_initial_deposition_date 2022-11-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yan, Z.C.' 1 0000-0002-3641-207X 'Zhang, D.' 2 0000-0002-5933-0085 'Qin, B.' 3 0000-0002-9180-0550 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of a triple-helix region of human collagen type III' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yan, Z.C.' 1 0000-0002-3641-207X primary 'Zhang, D.' 2 0000-0002-5933-0085 primary 'Qin, B.' 3 0000-0002-9180-0550 # _cell.angle_alpha 101.911 _cell.angle_alpha_esd ? _cell.angle_beta 91.584 _cell.angle_beta_esd ? _cell.angle_gamma 101.154 _cell.angle_gamma_esd ? _cell.entry_id 8HHK _cell.details ? _cell.formula_units_Z ? _cell.length_a 15.335 _cell.length_a_esd ? _cell.length_b 29.155 _cell.length_b_esd ? _cell.length_c 69.047 _cell.length_c_esd ? _cell.volume 29561.639 _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8HHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PRO-HYP-GLY-PRO-HYP-GLY-PRO-HYP-GLY-PHE-ASP-GLY-ARG-ASN-GLY-GLU-LYS-GLY 2871.979 6 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'P(HYP)GP(HYP)GP(HYP)GFDGRNGEKGETGP(HYP)GP(HYP)GP(HYP)G' _entity_poly.pdbx_seq_one_letter_code_can PPGPPGPPGFDGRNGEKGETGPPGPPGPPG _entity_poly.pdbx_strand_id A,B,C,G,H,I _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 HYP n 1 3 GLY n 1 4 PRO n 1 5 HYP n 1 6 GLY n 1 7 PRO n 1 8 HYP n 1 9 GLY n 1 10 PHE n 1 11 ASP n 1 12 GLY n 1 13 ARG n 1 14 ASN n 1 15 GLY n 1 16 GLU n 1 17 LYS n 1 18 GLY n 1 19 GLU n 1 20 THR n 1 21 GLY n 1 22 PRO n 1 23 HYP n 1 24 GLY n 1 25 PRO n 1 26 HYP n 1 27 GLY n 1 28 PRO n 1 29 HYP n 1 30 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 30 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'synthetic construct' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32630 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8HHK _struct_ref.pdbx_db_accession 8HHK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8HHK A 1 ? 30 ? 8HHK 1 ? 30 ? 1 30 2 1 8HHK B 1 ? 30 ? 8HHK 1 ? 30 ? 1 30 3 1 8HHK C 1 ? 30 ? 8HHK 1 ? 30 ? 1 30 4 1 8HHK G 1 ? 30 ? 8HHK 1 ? 30 ? 1 30 5 1 8HHK H 1 ? 30 ? 8HHK 1 ? 30 ? 1 30 6 1 8HHK I 1 ? 30 ? 8HHK 1 ? 30 ? 1 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8HHK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.72 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 28.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES sodium pH 7.5, 2% v/v Polyethylene glycol 400 2.0 M Ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-09-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 5.58 _reflns.entry_id 8HHK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3808 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.4 _reflns.pdbx_Rmerge_I_obs 0.07236 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.93 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.04551 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.988 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.56 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 15.24 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3808 _reflns_shell.percent_possible_all 91.50 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.06429 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.04426 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.981 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 23.39 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8HHK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.50 _refine.ls_d_res_low 22.46 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3808 _refine.ls_number_reflns_R_free 173 _refine.ls_number_reflns_R_work 3635 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.45 _refine.ls_percent_reflns_R_free 4.54 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2537 _refine.ls_R_factor_R_free 0.3138 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2511 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.31 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.1017 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3568 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 22.46 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 1025 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 944 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0096 ? 1005 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.4870 ? 1364 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.1010 ? 122 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0100 ? 187 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 30.2644 ? 359 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 173 _refine_ls_shell.number_reflns_R_work 3635 _refine_ls_shell.percent_reflns_obs 96.45 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.3138 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2511 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 8HHK _struct.title 'Crystal structure of a triple-helix region of human collagen type III' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8HHK _struct_keywords.text 'human collagen type III, CELL ADHESION' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 1 C ? ? ? 1_555 A HYP 2 N ? ? A PRO 1 A HYP 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A HYP 2 C ? ? ? 1_555 A GLY 3 N ? ? A HYP 2 A GLY 3 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A PRO 4 C ? ? ? 1_555 A HYP 5 N ? ? A PRO 4 A HYP 5 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? A HYP 5 C ? ? ? 1_555 A GLY 6 N ? ? A HYP 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A PRO 7 C ? ? ? 1_555 A HYP 8 N ? ? A PRO 7 A HYP 8 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A HYP 8 C ? ? ? 1_555 A GLY 9 N ? ? A HYP 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale7 covale both ? B PRO 1 C ? ? ? 1_555 B HYP 2 N ? ? B PRO 1 B HYP 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? B HYP 2 C ? ? ? 1_555 B GLY 3 N ? ? B HYP 2 B GLY 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? B PRO 4 C ? ? ? 1_555 B HYP 5 N ? ? B PRO 4 B HYP 5 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? B HYP 5 C ? ? ? 1_555 B GLY 6 N ? ? B HYP 5 B GLY 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? B PRO 7 C ? ? ? 1_555 B HYP 8 N ? ? B PRO 7 B HYP 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? B HYP 8 C ? ? ? 1_555 B GLY 9 N ? ? B HYP 8 B GLY 9 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale13 covale both ? B PRO 22 C ? ? ? 1_555 B HYP 23 N ? ? B PRO 22 B HYP 23 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? C PRO 1 C ? ? ? 1_555 C HYP 2 N ? ? C PRO 1 C HYP 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale15 covale both ? C HYP 2 C ? ? ? 1_555 C GLY 3 N ? ? C HYP 2 C GLY 3 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? C PRO 4 C ? ? ? 1_555 C HYP 5 N ? ? C PRO 4 C HYP 5 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale17 covale both ? C HYP 5 C ? ? ? 1_555 C GLY 6 N ? ? C HYP 5 C GLY 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale18 covale both ? C PRO 7 C ? ? ? 1_555 C HYP 8 N ? ? C PRO 7 C HYP 8 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale19 covale both ? C HYP 8 C ? ? ? 1_555 C GLY 9 N ? ? C HYP 8 C GLY 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? C PRO 22 C ? ? ? 1_555 C HYP 23 N ? ? C PRO 22 C HYP 23 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale21 covale both ? C HYP 23 C ? ? ? 1_555 C GLY 24 N ? ? C HYP 23 C GLY 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale22 covale both ? C PRO 25 C ? ? ? 1_555 C HYP 26 N ? ? C PRO 25 C HYP 26 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale23 covale both ? C HYP 26 C ? ? ? 1_555 C GLY 27 N ? ? C HYP 26 C GLY 27 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale24 covale both ? D PRO 1 C ? ? ? 1_555 D HYP 2 N ? ? G PRO 1 G HYP 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale25 covale both ? D HYP 2 C ? ? ? 1_555 D GLY 3 N ? ? G HYP 2 G GLY 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale26 covale both ? D PRO 4 C ? ? ? 1_555 D HYP 5 N ? ? G PRO 4 G HYP 5 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale27 covale both ? D HYP 5 C ? ? ? 1_555 D GLY 6 N ? ? G HYP 5 G GLY 6 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale28 covale both ? D PRO 7 C ? ? ? 1_555 D HYP 8 N ? ? G PRO 7 G HYP 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale29 covale both ? D HYP 8 C ? ? ? 1_555 D GLY 9 N ? ? G HYP 8 G GLY 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale30 covale both ? E PRO 1 C ? ? ? 1_555 E HYP 2 N ? ? H PRO 1 H HYP 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale31 covale both ? E HYP 2 C ? ? ? 1_555 E GLY 3 N ? ? H HYP 2 H GLY 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale32 covale both ? E PRO 4 C ? ? ? 1_555 E HYP 5 N ? ? H PRO 4 H HYP 5 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale33 covale both ? E HYP 5 C ? ? ? 1_555 E GLY 6 N ? ? H HYP 5 H GLY 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale34 covale both ? E PRO 7 C ? ? ? 1_555 E HYP 8 N ? ? H PRO 7 H HYP 8 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale35 covale both ? E HYP 8 C ? ? ? 1_555 E GLY 9 N ? ? H HYP 8 H GLY 9 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale36 covale both ? E PRO 22 C ? ? ? 1_555 E HYP 23 N ? ? H PRO 22 H HYP 23 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale37 covale both ? F PRO 1 C ? ? ? 1_555 F HYP 2 N ? ? I PRO 1 I HYP 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale38 covale both ? F HYP 2 C ? ? ? 1_555 F GLY 3 N ? ? I HYP 2 I GLY 3 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale39 covale both ? F PRO 4 C ? ? ? 1_555 F HYP 5 N ? ? I PRO 4 I HYP 5 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale40 covale both ? F HYP 5 C ? ? ? 1_555 F GLY 6 N ? ? I HYP 5 I GLY 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale41 covale both ? F PRO 7 C ? ? ? 1_555 F HYP 8 N ? ? I PRO 7 I HYP 8 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale42 covale both ? F HYP 8 C ? ? ? 1_555 F GLY 9 N ? ? I HYP 8 I GLY 9 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale43 covale both ? F PRO 22 C ? ? ? 1_555 F HYP 23 N ? ? I PRO 22 I HYP 23 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale44 covale both ? F HYP 23 C ? ? ? 1_555 F GLY 24 N ? ? I HYP 23 I GLY 24 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 8HHK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.065210 _atom_sites.fract_transf_matrix[1][2] 0.012858 _atom_sites.fract_transf_matrix[1][3] 0.004690 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034960 _atom_sites.fract_transf_matrix[2][3] 0.007730 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014838 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 HYP 2 2 2 HYP HYP A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 HYP 5 5 5 HYP HYP A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 HYP 8 8 8 HYP HYP A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLU 19 19 ? ? ? A . n A 1 20 THR 20 20 ? ? ? A . n A 1 21 GLY 21 21 ? ? ? A . n A 1 22 PRO 22 22 ? ? ? A . n A 1 23 HYP 23 23 ? ? ? A . n A 1 24 GLY 24 24 ? ? ? A . n A 1 25 PRO 25 25 ? ? ? A . n A 1 26 HYP 26 26 ? ? ? A . n A 1 27 GLY 27 27 ? ? ? A . n A 1 28 PRO 28 28 ? ? ? A . n A 1 29 HYP 29 29 ? ? ? A . n A 1 30 GLY 30 30 ? ? ? A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 HYP 2 2 2 HYP HYP B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 PRO 4 4 4 PRO PRO B . n B 1 5 HYP 5 5 5 HYP HYP B . n B 1 6 GLY 6 6 6 GLY GLY B . n B 1 7 PRO 7 7 7 PRO PRO B . n B 1 8 HYP 8 8 8 HYP HYP B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 PHE 10 10 10 PHE PHE B . n B 1 11 ASP 11 11 11 ASP ASP B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 ASN 14 14 14 ASN ASN B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 THR 20 20 20 THR THR B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 HYP 23 23 23 HYP HYP B . n B 1 24 GLY 24 24 ? ? ? B . n B 1 25 PRO 25 25 ? ? ? B . n B 1 26 HYP 26 26 ? ? ? B . n B 1 27 GLY 27 27 ? ? ? B . n B 1 28 PRO 28 28 ? ? ? B . n B 1 29 HYP 29 29 ? ? ? B . n B 1 30 GLY 30 30 ? ? ? B . n C 1 1 PRO 1 1 1 PRO PRO C . n C 1 2 HYP 2 2 2 HYP HYP C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 PRO 4 4 4 PRO PRO C . n C 1 5 HYP 5 5 5 HYP HYP C . n C 1 6 GLY 6 6 6 GLY GLY C . n C 1 7 PRO 7 7 7 PRO PRO C . n C 1 8 HYP 8 8 8 HYP HYP C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 PHE 10 10 10 PHE PHE C . n C 1 11 ASP 11 11 11 ASP ASP C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 ARG 13 13 13 ARG ARG C . n C 1 14 ASN 14 14 14 ASN ASN C . n C 1 15 GLY 15 15 15 GLY GLY C . n C 1 16 GLU 16 16 16 GLU GLU C . n C 1 17 LYS 17 17 17 LYS LYS C . n C 1 18 GLY 18 18 18 GLY GLY C . n C 1 19 GLU 19 19 19 GLU GLU C . n C 1 20 THR 20 20 20 THR THR C . n C 1 21 GLY 21 21 21 GLY GLY C . n C 1 22 PRO 22 22 22 PRO PRO C . n C 1 23 HYP 23 23 23 HYP HYP C . n C 1 24 GLY 24 24 24 GLY GLY C . n C 1 25 PRO 25 25 25 PRO PRO C . n C 1 26 HYP 26 26 26 HYP HYP C . n C 1 27 GLY 27 27 27 GLY GLY C . n C 1 28 PRO 28 28 ? ? ? C . n C 1 29 HYP 29 29 ? ? ? C . n C 1 30 GLY 30 30 ? ? ? C . n D 1 1 PRO 1 1 1 PRO PRO G . n D 1 2 HYP 2 2 2 HYP HYP G . n D 1 3 GLY 3 3 3 GLY GLY G . n D 1 4 PRO 4 4 4 PRO PRO G . n D 1 5 HYP 5 5 5 HYP HYP G . n D 1 6 GLY 6 6 6 GLY GLY G . n D 1 7 PRO 7 7 7 PRO PRO G . n D 1 8 HYP 8 8 8 HYP HYP G . n D 1 9 GLY 9 9 9 GLY GLY G . n D 1 10 PHE 10 10 10 PHE PHE G . n D 1 11 ASP 11 11 11 ASP ASP G . n D 1 12 GLY 12 12 12 GLY GLY G . n D 1 13 ARG 13 13 13 ARG ARG G . n D 1 14 ASN 14 14 14 ASN ASN G . n D 1 15 GLY 15 15 15 GLY GLY G . n D 1 16 GLU 16 16 16 GLU GLU G . n D 1 17 LYS 17 17 17 LYS LYS G . n D 1 18 GLY 18 18 18 GLY GLY G . n D 1 19 GLU 19 19 19 GLU GLU G . n D 1 20 THR 20 20 20 THR THR G . n D 1 21 GLY 21 21 21 GLY GLY G . n D 1 22 PRO 22 22 22 PRO PRO G . n D 1 23 HYP 23 23 ? ? ? G . n D 1 24 GLY 24 24 ? ? ? G . n D 1 25 PRO 25 25 ? ? ? G . n D 1 26 HYP 26 26 ? ? ? G . n D 1 27 GLY 27 27 ? ? ? G . n D 1 28 PRO 28 28 ? ? ? G . n D 1 29 HYP 29 29 ? ? ? G . n D 1 30 GLY 30 30 ? ? ? G . n E 1 1 PRO 1 1 1 PRO PRO H . n E 1 2 HYP 2 2 2 HYP HYP H . n E 1 3 GLY 3 3 3 GLY GLY H . n E 1 4 PRO 4 4 4 PRO PRO H . n E 1 5 HYP 5 5 5 HYP HYP H . n E 1 6 GLY 6 6 6 GLY GLY H . n E 1 7 PRO 7 7 7 PRO PRO H . n E 1 8 HYP 8 8 8 HYP HYP H . n E 1 9 GLY 9 9 9 GLY GLY H . n E 1 10 PHE 10 10 10 PHE PHE H . n E 1 11 ASP 11 11 11 ASP ASP H . n E 1 12 GLY 12 12 12 GLY GLY H . n E 1 13 ARG 13 13 13 ARG ARG H . n E 1 14 ASN 14 14 14 ASN ASN H . n E 1 15 GLY 15 15 15 GLY GLY H . n E 1 16 GLU 16 16 16 GLU GLU H . n E 1 17 LYS 17 17 17 LYS LYS H . n E 1 18 GLY 18 18 18 GLY GLY H . n E 1 19 GLU 19 19 19 GLU GLU H . n E 1 20 THR 20 20 20 THR THR H . n E 1 21 GLY 21 21 21 GLY GLY H . n E 1 22 PRO 22 22 22 PRO PRO H . n E 1 23 HYP 23 23 23 HYP HYP H . n E 1 24 GLY 24 24 ? ? ? H . n E 1 25 PRO 25 25 ? ? ? H . n E 1 26 HYP 26 26 ? ? ? H . n E 1 27 GLY 27 27 ? ? ? H . n E 1 28 PRO 28 28 ? ? ? H . n E 1 29 HYP 29 29 ? ? ? H . n E 1 30 GLY 30 30 ? ? ? H . n F 1 1 PRO 1 1 1 PRO PRO I . n F 1 2 HYP 2 2 2 HYP HYP I . n F 1 3 GLY 3 3 3 GLY GLY I . n F 1 4 PRO 4 4 4 PRO PRO I . n F 1 5 HYP 5 5 5 HYP HYP I . n F 1 6 GLY 6 6 6 GLY GLY I . n F 1 7 PRO 7 7 7 PRO PRO I . n F 1 8 HYP 8 8 8 HYP HYP I . n F 1 9 GLY 9 9 9 GLY GLY I . n F 1 10 PHE 10 10 10 PHE PHE I . n F 1 11 ASP 11 11 11 ASP ASP I . n F 1 12 GLY 12 12 12 GLY GLY I . n F 1 13 ARG 13 13 13 ARG ARG I . n F 1 14 ASN 14 14 14 ASN ASN I . n F 1 15 GLY 15 15 15 GLY GLY I . n F 1 16 GLU 16 16 16 GLU GLU I . n F 1 17 LYS 17 17 17 LYS LYS I . n F 1 18 GLY 18 18 18 GLY GLY I . n F 1 19 GLU 19 19 19 GLU GLU I . n F 1 20 THR 20 20 20 THR THR I . n F 1 21 GLY 21 21 21 GLY GLY I . n F 1 22 PRO 22 22 22 PRO PRO I . n F 1 23 HYP 23 23 23 HYP HYP I . n F 1 24 GLY 24 24 24 GLY GLY I . n F 1 25 PRO 25 25 ? ? ? I . n F 1 26 HYP 26 26 ? ? ? I . n F 1 27 GLY 27 27 ? ? ? I . n F 1 28 PRO 28 28 ? ? ? I . n F 1 29 HYP 29 29 ? ? ? I . n F 1 30 GLY 30 30 ? ? ? I . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email proteinnovo@hotmail.com _pdbx_contact_author.name_first Zichen _pdbx_contact_author.name_last Yan _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3641-207X # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 1 101 1 SO4 SO4 B . H 3 HOH 1 101 14 HOH HOH A . H 3 HOH 2 102 20 HOH HOH A . H 3 HOH 3 103 17 HOH HOH A . H 3 HOH 4 104 62 HOH HOH A . H 3 HOH 5 105 57 HOH HOH A . H 3 HOH 6 106 66 HOH HOH A . H 3 HOH 7 107 70 HOH HOH A . H 3 HOH 8 108 68 HOH HOH A . I 3 HOH 1 201 35 HOH HOH B . I 3 HOH 2 202 16 HOH HOH B . I 3 HOH 3 203 3 HOH HOH B . I 3 HOH 4 204 26 HOH HOH B . I 3 HOH 5 205 11 HOH HOH B . I 3 HOH 6 206 44 HOH HOH B . I 3 HOH 7 207 49 HOH HOH B . I 3 HOH 8 208 34 HOH HOH B . I 3 HOH 9 209 24 HOH HOH B . I 3 HOH 10 210 52 HOH HOH B . I 3 HOH 11 211 67 HOH HOH B . I 3 HOH 12 212 7 HOH HOH B . I 3 HOH 13 213 32 HOH HOH B . I 3 HOH 14 214 25 HOH HOH B . I 3 HOH 15 215 88 HOH HOH B . I 3 HOH 16 216 78 HOH HOH B . I 3 HOH 17 217 54 HOH HOH B . J 3 HOH 1 101 43 HOH HOH C . J 3 HOH 2 102 46 HOH HOH C . J 3 HOH 3 103 4 HOH HOH C . J 3 HOH 4 104 82 HOH HOH C . J 3 HOH 5 105 8 HOH HOH C . J 3 HOH 6 106 10 HOH HOH C . J 3 HOH 7 107 56 HOH HOH C . J 3 HOH 8 108 83 HOH HOH C . J 3 HOH 9 109 60 HOH HOH C . J 3 HOH 10 110 91 HOH HOH C . J 3 HOH 11 111 77 HOH HOH C . J 3 HOH 12 112 90 HOH HOH C . J 3 HOH 13 113 86 HOH HOH C . J 3 HOH 14 114 85 HOH HOH C . J 3 HOH 15 115 87 HOH HOH C . J 3 HOH 16 116 76 HOH HOH C . K 3 HOH 1 101 5 HOH HOH G . K 3 HOH 2 102 55 HOH HOH G . K 3 HOH 3 103 23 HOH HOH G . K 3 HOH 4 104 64 HOH HOH G . K 3 HOH 5 105 75 HOH HOH G . K 3 HOH 6 106 29 HOH HOH G . K 3 HOH 7 107 65 HOH HOH G . K 3 HOH 8 108 71 HOH HOH G . L 3 HOH 1 101 38 HOH HOH H . L 3 HOH 2 102 19 HOH HOH H . L 3 HOH 3 103 21 HOH HOH H . L 3 HOH 4 104 12 HOH HOH H . L 3 HOH 5 105 6 HOH HOH H . L 3 HOH 6 106 37 HOH HOH H . L 3 HOH 7 107 22 HOH HOH H . L 3 HOH 8 108 63 HOH HOH H . L 3 HOH 9 109 51 HOH HOH H . L 3 HOH 10 110 53 HOH HOH H . L 3 HOH 11 111 30 HOH HOH H . L 3 HOH 12 112 9 HOH HOH H . L 3 HOH 13 113 31 HOH HOH H . L 3 HOH 14 114 28 HOH HOH H . L 3 HOH 15 115 47 HOH HOH H . L 3 HOH 16 116 41 HOH HOH H . L 3 HOH 17 117 81 HOH HOH H . M 3 HOH 1 101 42 HOH HOH I . M 3 HOH 2 102 15 HOH HOH I . M 3 HOH 3 103 18 HOH HOH I . M 3 HOH 4 104 74 HOH HOH I . M 3 HOH 5 105 50 HOH HOH I . M 3 HOH 6 106 59 HOH HOH I . M 3 HOH 7 107 1 HOH HOH I . M 3 HOH 8 108 58 HOH HOH I . M 3 HOH 9 109 48 HOH HOH I . M 3 HOH 10 110 92 HOH HOH I . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,G,H,I,J 2 1 D,E,F,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3610 ? 1 MORE -13 ? 1 'SSA (A^2)' 5120 ? 2 'ABSA (A^2)' 4220 ? 2 MORE -24 ? 2 'SSA (A^2)' 4880 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-01-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.1_3865 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _pdbx_entry_details.entry_id 8HHK _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 211 ? ? O G HOH 108 ? ? 2.17 2 1 ND2 H ASN 14 ? ? O H HOH 101 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 17 ? ? -36.73 140.14 2 1 THR C 20 ? ? -29.71 130.71 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLU _pdbx_validate_main_chain_plane.auth_asym_id C _pdbx_validate_main_chain_plane.auth_seq_id 19 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id B _pdbx_validate_main_chain_plane.improper_torsion_angle 17.70 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 19 ? A GLU 19 2 1 Y 1 A THR 20 ? A THR 20 3 1 Y 1 A GLY 21 ? A GLY 21 4 1 Y 1 A PRO 22 ? A PRO 22 5 1 Y 1 A HYP 23 ? A HYP 23 6 1 Y 1 A GLY 24 ? A GLY 24 7 1 Y 1 A PRO 25 ? A PRO 25 8 1 Y 1 A HYP 26 ? A HYP 26 9 1 Y 1 A GLY 27 ? A GLY 27 10 1 Y 1 A PRO 28 ? A PRO 28 11 1 Y 1 A HYP 29 ? A HYP 29 12 1 Y 1 A GLY 30 ? A GLY 30 13 1 Y 1 B GLY 24 ? B GLY 24 14 1 Y 1 B PRO 25 ? B PRO 25 15 1 Y 1 B HYP 26 ? B HYP 26 16 1 Y 1 B GLY 27 ? B GLY 27 17 1 Y 1 B PRO 28 ? B PRO 28 18 1 Y 1 B HYP 29 ? B HYP 29 19 1 Y 1 B GLY 30 ? B GLY 30 20 1 Y 1 C PRO 28 ? C PRO 28 21 1 Y 1 C HYP 29 ? C HYP 29 22 1 Y 1 C GLY 30 ? C GLY 30 23 1 Y 1 G HYP 23 ? D HYP 23 24 1 Y 1 G GLY 24 ? D GLY 24 25 1 Y 1 G PRO 25 ? D PRO 25 26 1 Y 1 G HYP 26 ? D HYP 26 27 1 Y 1 G GLY 27 ? D GLY 27 28 1 Y 1 G PRO 28 ? D PRO 28 29 1 Y 1 G HYP 29 ? D HYP 29 30 1 Y 1 G GLY 30 ? D GLY 30 31 1 Y 1 H GLY 24 ? E GLY 24 32 1 Y 1 H PRO 25 ? E PRO 25 33 1 Y 1 H HYP 26 ? E HYP 26 34 1 Y 1 H GLY 27 ? E GLY 27 35 1 Y 1 H PRO 28 ? E PRO 28 36 1 Y 1 H HYP 29 ? E HYP 29 37 1 Y 1 H GLY 30 ? E GLY 30 38 1 Y 1 I PRO 25 ? F PRO 25 39 1 Y 1 I HYP 26 ? F HYP 26 40 1 Y 1 I GLY 27 ? F GLY 27 41 1 Y 1 I PRO 28 ? F PRO 28 42 1 Y 1 I HYP 29 ? F HYP 29 43 1 Y 1 I GLY 30 ? F GLY 30 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 1' _space_group.name_Hall 'P 1' _space_group.IT_number 1 _space_group.crystal_system triclinic _space_group.id 1 #