HEADER TRANSCRIPTION 19-NOV-22 8HIB TITLE THE CRYSTAL STRUCTURE OF PYGO2-LDB1-SSBP2 TRIPLE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN-BINDING PROTEIN 1; COMPND 3 CHAIN: V; COMPND 4 SYNONYM: LDB-1,CARBOXYL-TERMINAL LIM DOMAIN-BINDING PROTEIN 2,CLIM-2, COMPND 5 LIM DOMAIN-BINDING FACTOR CLIM2,HLDB1,NUCLEAR LIM INTERACTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN 2; COMPND 9 CHAIN: A, B; COMPND 10 SYNONYM: SEQUENCE-SPECIFIC SINGLE-STRANDED-DNA-BINDING PROTEIN 2; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PYGOPUS HOMOLOG 2; COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: MUTANT 58Y WAS GENERATED FOR MONITORING UV280 TO KNOW COMPND 17 WHERE PROTEINS ARE DURING PURIFICATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LDB1, CLIM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SSBP2, SSDP2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: PYGO2, PP7910; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN BINDING, COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.WANG,X.X.YAN,W.Q.XU REVDAT 1 22-NOV-23 8HIB 0 JRNL AUTH H.Y.WANG,X.X.YAN,W.Q.XU JRNL TITL THE CRYSTAL STRUCTURE OF PYGO2-LDB1-SSBP2 TRIPLE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9200 - 5.4200 1.00 2903 142 0.1865 0.2164 REMARK 3 2 5.4200 - 4.3100 1.00 2701 158 0.1767 0.1903 REMARK 3 3 4.3100 - 3.7700 1.00 2683 138 0.2066 0.2443 REMARK 3 4 3.7700 - 3.4300 1.00 2680 125 0.2218 0.3174 REMARK 3 5 3.4300 - 3.1800 1.00 2644 129 0.2451 0.2737 REMARK 3 6 3.1800 - 3.0000 1.00 2620 142 0.2575 0.3022 REMARK 3 7 3.0000 - 2.8500 1.00 2624 127 0.2722 0.3052 REMARK 3 8 2.8500 - 2.7200 1.00 2620 139 0.2599 0.2688 REMARK 3 9 2.7200 - 2.6200 1.00 2581 142 0.2768 0.2964 REMARK 3 10 2.6200 - 2.5300 1.00 2586 140 0.2937 0.3247 REMARK 3 11 2.5300 - 2.4500 1.00 2600 131 0.3454 0.3789 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3334 REMARK 3 ANGLE : 1.110 4524 REMARK 3 CHIRALITY : 0.058 472 REMARK 3 PLANARITY : 0.010 578 REMARK 3 DIHEDRAL : 5.988 426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN V AND RESSEQ 65:280) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7722 40.2500 107.1095 REMARK 3 T TENSOR REMARK 3 T11: 0.5216 T22: 0.4088 REMARK 3 T33: 0.4737 T12: 0.1417 REMARK 3 T13: 0.1068 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.3473 L22: 4.8947 REMARK 3 L33: 3.6193 L12: -1.8951 REMARK 3 L13: -1.3551 L23: 0.6214 REMARK 3 S TENSOR REMARK 3 S11: 0.2072 S12: 0.2530 S13: -0.0344 REMARK 3 S21: -0.0707 S22: -0.1155 S23: 0.1462 REMARK 3 S31: -0.4744 S32: -0.4244 S33: 0.0297 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 11:93) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5842 55.4716 123.1422 REMARK 3 T TENSOR REMARK 3 T11: 0.9157 T22: 0.7193 REMARK 3 T33: 0.5425 T12: 0.3126 REMARK 3 T13: 0.1216 T23: -0.1267 REMARK 3 L TENSOR REMARK 3 L11: 3.8795 L22: 2.6203 REMARK 3 L33: 0.9794 L12: -0.8003 REMARK 3 L13: -0.6823 L23: 1.7304 REMARK 3 S TENSOR REMARK 3 S11: 0.8129 S12: -0.1148 S13: 0.0443 REMARK 3 S21: -0.4678 S22: -0.8062 S23: 0.1112 REMARK 3 S31: -0.3840 S32: -0.1654 S33: -0.0462 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 10:77) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8186 49.1556 123.8102 REMARK 3 T TENSOR REMARK 3 T11: 0.8209 T22: 0.7669 REMARK 3 T33: 0.7177 T12: 0.1233 REMARK 3 T13: 0.1172 T23: -0.1578 REMARK 3 L TENSOR REMARK 3 L11: 1.5462 L22: 1.7835 REMARK 3 L33: 1.6425 L12: -1.2989 REMARK 3 L13: -0.1415 L23: 1.2089 REMARK 3 S TENSOR REMARK 3 S11: 0.3966 S12: 0.1531 S13: -0.3580 REMARK 3 S21: 0.1374 S22: -0.5024 S23: 0.3381 REMARK 3 S31: -0.1085 S32: -0.8166 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 58:81) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5823 48.9726 118.9724 REMARK 3 T TENSOR REMARK 3 T11: 0.8993 T22: 1.1638 REMARK 3 T33: 1.1222 T12: 0.1017 REMARK 3 T13: 0.0243 T23: -0.3521 REMARK 3 L TENSOR REMARK 3 L11: 0.3422 L22: 0.0412 REMARK 3 L33: 0.4332 L12: 0.0310 REMARK 3 L13: 0.0125 L23: -0.1945 REMARK 3 S TENSOR REMARK 3 S11: 0.2917 S12: 0.5437 S13: 0.2528 REMARK 3 S21: -0.2971 S22: -0.5727 S23: 0.4299 REMARK 3 S31: -0.3201 S32: -0.7239 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1300033671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2-4158 REMARK 200 STARTING MODEL: 6TYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM LI2SO4, 100 MM SODIUM CITRATE REMARK 280 TRIBASIC DIHYDRATE PH 5.6, 1% V/V PEG400, AND 10 MM DTT, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 168.18267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.09133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 126.13700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.04567 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 210.22833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 168.18267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 84.09133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.04567 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 126.13700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 210.22833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 210.22833 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH V 345 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY V 56 REMARK 465 ILE V 57 REMARK 465 GLY V 58 REMARK 465 ARG V 59 REMARK 465 HIS V 60 REMARK 465 THR V 61 REMARK 465 PRO V 62 REMARK 465 TYR V 63 REMARK 465 GLY V 64 REMARK 465 MET V 281 REMARK 465 VAL V 282 REMARK 465 ALA V 283 REMARK 465 PRO V 284 REMARK 465 PRO V 285 REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 TYR A 94 REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 LYS B 6 REMARK 465 SER B 7 REMARK 465 ASN B 8 REMARK 465 SER B 9 REMARK 465 ARG B 78 REMARK 465 ARG B 79 REMARK 465 GLU B 80 REMARK 465 THR B 81 REMARK 465 CYS B 82 REMARK 465 GLU B 83 REMARK 465 HIS B 84 REMARK 465 SER B 85 REMARK 465 SER B 86 REMARK 465 GLU B 87 REMARK 465 ALA B 88 REMARK 465 LYS B 89 REMARK 465 ALA B 90 REMARK 465 PHE B 91 REMARK 465 HIS B 92 REMARK 465 ASP B 93 REMARK 465 TYR B 94 REMARK 465 PHE D 82 REMARK 465 GLY D 83 REMARK 465 ALA D 84 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE V 275 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY V 113 C PRO V 114 N 0.152 REMARK 500 ALA D 62 C PRO D 63 N 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO V 114 C - N - CA ANGL. DEV. = 17.0 DEGREES REMARK 500 PRO V 114 C - N - CD ANGL. DEV. = -16.9 DEGREES REMARK 500 PRO D 63 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 PRO D 63 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN V 66 -65.01 -98.68 REMARK 500 ASP V 112 -125.25 52.87 REMARK 500 GLN V 161 66.34 -107.50 REMARK 500 MET V 172 69.11 38.30 REMARK 500 ASP V 189 -158.64 -154.23 REMARK 500 HIS V 216 34.18 -93.41 REMARK 500 GLN V 218 71.35 -101.87 REMARK 500 ASP V 219 81.63 -152.42 REMARK 500 ASN B 51 48.93 -151.16 REMARK 500 GLU D 60 -66.13 68.96 REMARK 500 PHE D 61 32.47 -87.76 REMARK 500 THR D 66 72.60 51.15 REMARK 500 MET D 68 101.02 -59.04 REMARK 500 PRO D 77 7.75 -69.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HIB V 56 285 UNP Q86U70 LDB1_HUMAN 20 249 DBREF 8HIB A 1 94 UNP P81877 SSBP2_HUMAN 1 94 DBREF 8HIB B 1 94 UNP P81877 SSBP2_HUMAN 1 94 DBREF 8HIB D 59 84 UNP Q9BRQ0 PYGO2_HUMAN 59 84 SEQADV 8HIB TYR D 58 UNP Q9BRQ0 EXPRESSION TAG SEQRES 1 V 230 GLY ILE GLY ARG HIS THR PRO TYR GLY ASN GLN THR ASP SEQRES 2 V 230 TYR ARG ILE PHE GLU LEU ASN LYS ARG LEU GLN ASN TRP SEQRES 3 V 230 THR GLU GLU CYS ASP ASN LEU TRP TRP ASP ALA PHE THR SEQRES 4 V 230 THR GLU PHE PHE GLU ASP ASP ALA MET LEU THR ILE THR SEQRES 5 V 230 PHE CYS LEU GLU ASP GLY PRO LYS ARG TYR THR ILE GLY SEQRES 6 V 230 ARG THR LEU ILE PRO ARG TYR PHE ARG SER ILE PHE GLU SEQRES 7 V 230 GLY GLY ALA THR GLU LEU TYR TYR VAL LEU LYS HIS PRO SEQRES 8 V 230 LYS GLU ALA PHE HIS SER ASN PHE VAL SER LEU ASP CYS SEQRES 9 V 230 ASP GLN GLY SER MET VAL THR GLN HIS GLY LYS PRO MET SEQRES 10 V 230 PHE THR GLN VAL CYS VAL GLU GLY ARG LEU TYR LEU GLU SEQRES 11 V 230 PHE MET PHE ASP ASP MET MET ARG ILE LYS THR TRP HIS SEQRES 12 V 230 PHE SER ILE ARG GLN HIS ARG GLU LEU ILE PRO ARG SER SEQRES 13 V 230 ILE LEU ALA MET HIS ALA GLN ASP PRO GLN MET LEU ASP SEQRES 14 V 230 GLN LEU SER LYS ASN ILE THR ARG CYS GLY LEU SER ASN SEQRES 15 V 230 SER THR LEU ASN TYR LEU ARG LEU CYS VAL ILE LEU GLU SEQRES 16 V 230 PRO MET GLN GLU LEU MET SER ARG HIS LYS THR TYR SER SEQRES 17 V 230 LEU SER PRO ARG ASP CYS LEU LYS THR CYS LEU PHE GLN SEQRES 18 V 230 LYS TRP GLN ARG MET VAL ALA PRO PRO SEQRES 1 A 94 MET TYR GLY LYS GLY LYS SER ASN SER SER ALA VAL PRO SEQRES 2 A 94 SER ASP SER GLN ALA ARG GLU LYS LEU ALA LEU TYR VAL SEQRES 3 A 94 TYR GLU TYR LEU LEU HIS VAL GLY ALA GLN LYS SER ALA SEQRES 4 A 94 GLN THR PHE LEU SER GLU ILE ARG TRP GLU LYS ASN ILE SEQRES 5 A 94 THR LEU GLY GLU PRO PRO GLY PHE LEU HIS SER TRP TRP SEQRES 6 A 94 CYS VAL PHE TRP ASP LEU TYR CYS ALA ALA PRO GLU ARG SEQRES 7 A 94 ARG GLU THR CYS GLU HIS SER SER GLU ALA LYS ALA PHE SEQRES 8 A 94 HIS ASP TYR SEQRES 1 B 94 MET TYR GLY LYS GLY LYS SER ASN SER SER ALA VAL PRO SEQRES 2 B 94 SER ASP SER GLN ALA ARG GLU LYS LEU ALA LEU TYR VAL SEQRES 3 B 94 TYR GLU TYR LEU LEU HIS VAL GLY ALA GLN LYS SER ALA SEQRES 4 B 94 GLN THR PHE LEU SER GLU ILE ARG TRP GLU LYS ASN ILE SEQRES 5 B 94 THR LEU GLY GLU PRO PRO GLY PHE LEU HIS SER TRP TRP SEQRES 6 B 94 CYS VAL PHE TRP ASP LEU TYR CYS ALA ALA PRO GLU ARG SEQRES 7 B 94 ARG GLU THR CYS GLU HIS SER SER GLU ALA LYS ALA PHE SEQRES 8 B 94 HIS ASP TYR SEQRES 1 D 27 TYR THR GLU PHE ALA PRO PRO PRO THR PRO MET VAL ASP SEQRES 2 D 27 HIS LEU VAL ALA SER ASN PRO PHE GLU ASP ASP PHE GLY SEQRES 3 D 27 ALA FORMUL 5 HOH *67(H2 O) HELIX 1 AA1 GLN V 66 GLN V 79 1 14 HELIX 2 AA2 ASP V 86 PHE V 97 1 12 HELIX 3 AA3 LEU V 123 GLY V 134 1 12 HELIX 4 AA4 PRO V 209 HIS V 216 1 8 HELIX 5 AA5 ASP V 219 ASP V 224 1 6 HELIX 6 AA6 SER V 236 GLU V 250 1 15 HELIX 7 AA7 PRO V 251 TYR V 262 1 12 HELIX 8 AA8 SER V 265 ARG V 280 1 16 HELIX 9 AA9 SER A 14 VAL A 33 1 20 HELIX 10 AB1 ALA A 35 ILE A 46 1 12 HELIX 11 AB2 GLY A 59 ALA A 74 1 16 HELIX 12 AB3 SER A 85 ASP A 93 1 9 HELIX 13 AB4 SER B 14 VAL B 33 1 20 HELIX 14 AB5 ALA B 35 ILE B 46 1 12 HELIX 15 AB6 GLY B 59 ALA B 75 1 17 SHEET 1 AA1 6 LYS V 115 GLY V 120 0 SHEET 2 AA1 6 PHE V 98 PHE V 108 -1 N PHE V 108 O LYS V 115 SHEET 3 AA1 6 ILE V 194 LEU V 207 1 O ILE V 201 N THR V 107 SHEET 4 AA1 6 GLN V 175 MET V 187 -1 N GLU V 185 O LYS V 195 SHEET 5 AA1 6 PHE V 154 HIS V 168 -1 N VAL V 155 O PHE V 186 SHEET 6 AA1 6 ALA V 136 LYS V 144 -1 N THR V 137 O GLN V 167 SHEET 1 AA2 6 LYS V 115 GLY V 120 0 SHEET 2 AA2 6 PHE V 98 PHE V 108 -1 N PHE V 108 O LYS V 115 SHEET 3 AA2 6 ILE V 194 LEU V 207 1 O ILE V 201 N THR V 107 SHEET 4 AA2 6 GLN V 175 MET V 187 -1 N GLU V 185 O LYS V 195 SHEET 5 AA2 6 PHE V 154 HIS V 168 -1 N VAL V 155 O PHE V 186 SHEET 6 AA2 6 LYS V 147 PHE V 150 -1 N LYS V 147 O ASP V 158 SHEET 1 AA3 2 ILE B 52 THR B 53 0 SHEET 2 AA3 2 LEU D 72 VAL D 73 1 O LEU D 72 N THR B 53 CISPEP 1 LYS V 170 PRO V 171 0 -1.46 CISPEP 2 PRO A 57 PRO A 58 0 -3.39 CISPEP 3 PRO B 57 PRO B 58 0 -7.53 CRYST1 104.499 104.499 252.274 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009569 0.005525 0.000000 0.00000 SCALE2 0.000000 0.011050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003964 0.00000