HEADER HYDROLASE 22-NOV-22 8HJ8 TITLE CRYSTAL STRUCTURE OF BARLEY EXOHYDROLASE ISOFORM EXOI E220A MUTANT IN TITLE 2 COMPLEX WITH 2-DEOXY-2-FLUORO-D-GLUCOPYRANOSIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCO_HYDRO_3 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: THIS PROTEIN SEQUENCE CONTAINS THE EXPRESSION TAG COMPND 7 (HIS-3 TO ALA-0), AND ENGINEERED MUTATION RESIDUE IS E220A. WHOLE COMPND 8 PROTEIN SEQUENCE WAS CONFIRMED BY DNA SEQUENCING. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_TAXID: 4513; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS BARLEY EXOHYDROLASEI, HYDROLASE, ENZYME FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.LUANG,V.A.STRELTSOV,M.HRMOVA REVDAT 1 25-DEC-24 8HJ8 0 JRNL AUTH S.LUANG,V.A.STRELTSOV,M.HRMOVA JRNL TITL CRYSTAL STRUCTURE OF BARLEY EXOHYDROLASE ISOFORM EXOI E220A JRNL TITL 2 MUTANT IN COMPLEX WITH 2-DEOXY-2-FLUORO-D-GLUCOPYRANOSIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 7.0.005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 64687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3452 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 154 REMARK 3 SOLVENT ATOMS : 629 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49000 REMARK 3 B22 (A**2) : 1.49000 REMARK 3 B33 (A**2) : -2.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.083 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64687 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 88.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WLI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AMMONIUM SULFATE, 75 MM HEPES REMARK 280 -NAOH BUFFER, PH 7, CONTAINING 7.5 MM SODIUM ACETATE AND 1.2% (W/ REMARK 280 V) PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.34450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.25000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.01675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.25000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.67225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 137.01675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.67225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.34450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 603 REMARK 465 LYS A 604 REMARK 465 TYR A 605 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 285 C1 G2F A 704 1.39 REMARK 500 OD1 ASN A 498 C1 NAG A 702 1.52 REMARK 500 CG ASN A 498 C1 NAG A 702 1.74 REMARK 500 OD1 ASN A 466 OG1 THR A 508 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 13 CD GLU A 13 OE1 0.069 REMARK 500 ARG A 126 CD ARG A 126 NE -0.104 REMARK 500 ARG A 440 CZ ARG A 440 NH1 0.095 REMARK 500 ARG A 440 CZ ARG A 440 NH2 0.100 REMARK 500 GLU A 503 CD GLU A 503 OE2 0.144 REMARK 500 ARG A 517 CZ ARG A 517 NH1 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 119 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 126 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP A 166 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP A 211 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 285 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 285 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 291 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 291 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 351 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU A 376 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 440 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 440 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 440 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU A 449 OE1 - CD - OE2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP A 456 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP A 456 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A 517 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 517 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 566 CG - CD - NE ANGL. DEV. = 22.4 DEGREES REMARK 500 ARG A 566 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 592 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -2 -89.98 145.52 REMARK 500 ALA A -1 157.71 -44.46 REMARK 500 HIS A 98 66.77 -157.81 REMARK 500 ASN A 221 -149.43 -95.66 REMARK 500 TYR A 271 -63.41 -98.39 REMARK 500 ILE A 432 -56.36 74.09 REMARK 500 GLU A 491 -137.16 51.38 REMARK 500 TRP A 544 -136.73 60.69 REMARK 500 VAL A 582 109.44 -49.09 REMARK 500 TYR A 587 93.81 -66.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A -3 HIS A -2 128.28 REMARK 500 ASP A 187 PHE A 188 -142.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 G2F A 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WLI RELATED DB: PDB REMARK 900 WLI IS RECOMBINANT WILD-TYPE PROTEIN LIGAND-FREE PROTEIN REMARK 900 RELATED ID: 1IEW RELATED DB: PDB REMARK 900 1IEW CONTAINS NATIVE WILD-TYPE PROTEIN IN COMPLEX WITH G2F DBREF1 8HJ8 A 0 605 UNP A0A8I6XKI1_HORVV DBREF2 8HJ8 A A0A8I6XKI1 77 682 SEQADV 8HJ8 HIS A -3 UNP A0A8I6XKI EXPRESSION TAG SEQADV 8HJ8 HIS A -2 UNP A0A8I6XKI EXPRESSION TAG SEQADV 8HJ8 ALA A -1 UNP A0A8I6XKI EXPRESSION TAG SEQADV 8HJ8 ALA A 220 UNP A0A8I6XKI GLU 297 ENGINEERED MUTATION SEQADV 8HJ8 LYS A 320 UNP A0A8I6XKI ASN 397 CONFLICT SEQRES 1 A 609 HIS HIS ALA ALA ASP TYR VAL LEU TYR LYS ASP ALA THR SEQRES 2 A 609 LYS PRO VAL GLU ASP ARG VAL ALA ASP LEU LEU GLY ARG SEQRES 3 A 609 MET THR LEU ALA GLU LYS ILE GLY GLN MET THR GLN ILE SEQRES 4 A 609 GLU ARG LEU VAL ALA THR PRO ASP VAL LEU ARG ASP ASN SEQRES 5 A 609 PHE ILE GLY SER LEU LEU SER GLY GLY GLY SER VAL PRO SEQRES 6 A 609 ARG LYS GLY ALA THR ALA LYS GLU TRP GLN ASP MET VAL SEQRES 7 A 609 ASP GLY PHE GLN LYS ALA CYS MET SER THR ARG LEU GLY SEQRES 8 A 609 ILE PRO MET ILE TYR GLY ILE ASP ALA VAL HIS GLY GLN SEQRES 9 A 609 ASN ASN VAL TYR GLY ALA THR ILE PHE PRO HIS ASN VAL SEQRES 10 A 609 GLY LEU GLY ALA THR ARG ASP PRO TYR LEU VAL LYS ARG SEQRES 11 A 609 ILE GLY GLU ALA THR ALA LEU GLU VAL ARG ALA THR GLY SEQRES 12 A 609 ILE GLN TYR ALA PHE ALA PRO CYS ILE ALA VAL CYS ARG SEQRES 13 A 609 ASP PRO ARG TRP GLY ARG CYS TYR GLU SER TYR SER GLU SEQRES 14 A 609 ASP ARG ARG ILE VAL GLN SER MET THR GLU LEU ILE PRO SEQRES 15 A 609 GLY LEU GLN GLY ASP VAL PRO LYS ASP PHE THR SER GLY SEQRES 16 A 609 MET PRO PHE VAL ALA GLY LYS ASN LYS VAL ALA ALA CYS SEQRES 17 A 609 ALA LYS HIS PHE VAL GLY ASP GLY GLY THR VAL ASP GLY SEQRES 18 A 609 ILE ASN ALA ASN ASN THR ILE ILE ASN ARG GLU GLY LEU SEQRES 19 A 609 MET ASN ILE HIS MET PRO ALA TYR LYS ASN ALA MET ASP SEQRES 20 A 609 LYS GLY VAL SER THR VAL MET ILE SER TYR SER SER TRP SEQRES 21 A 609 ASN GLY VAL LYS MET HIS ALA ASN GLN ASP LEU VAL THR SEQRES 22 A 609 GLY TYR LEU LYS ASP THR LEU LYS PHE LYS GLY PHE VAL SEQRES 23 A 609 ILE SER ASP TRP GLU GLY ILE ASP ARG ILE THR THR PRO SEQRES 24 A 609 ALA GLY SER ASP TYR SER TYR SER VAL LYS ALA SER ILE SEQRES 25 A 609 LEU ALA GLY LEU ASP MET ILE MET VAL PRO ASN LYS TYR SEQRES 26 A 609 GLN GLN PHE ILE SER ILE LEU THR GLY HIS VAL ASN GLY SEQRES 27 A 609 GLY VAL ILE PRO MET SER ARG ILE ASP ASP ALA VAL THR SEQRES 28 A 609 ARG ILE LEU ARG VAL LYS PHE THR MET GLY LEU PHE GLU SEQRES 29 A 609 ASN PRO TYR ALA ASP PRO ALA MET ALA GLU GLN LEU GLY SEQRES 30 A 609 LYS GLN GLU HIS ARG ASP LEU ALA ARG GLU ALA ALA ARG SEQRES 31 A 609 LYS SER LEU VAL LEU LEU LYS ASN GLY LYS THR SER THR SEQRES 32 A 609 ASP ALA PRO LEU LEU PRO LEU PRO LYS LYS ALA PRO LYS SEQRES 33 A 609 ILE LEU VAL ALA GLY SER HIS ALA ASP ASN LEU GLY TYR SEQRES 34 A 609 GLN CYS GLY GLY TRP THR ILE GLU TRP GLN GLY ASP THR SEQRES 35 A 609 GLY ARG THR THR VAL GLY THR THR ILE LEU GLU ALA VAL SEQRES 36 A 609 LYS ALA ALA VAL ASP PRO SER THR VAL VAL VAL PHE ALA SEQRES 37 A 609 GLU ASN PRO ASP ALA GLU PHE VAL LYS SER GLY GLY PHE SEQRES 38 A 609 SER TYR ALA ILE VAL ALA VAL GLY GLU HIS PRO TYR THR SEQRES 39 A 609 GLU THR LYS GLY ASP ASN LEU ASN LEU THR ILE PRO GLU SEQRES 40 A 609 PRO GLY LEU SER THR VAL GLN ALA VAL CYS GLY GLY VAL SEQRES 41 A 609 ARG CYS ALA THR VAL LEU ILE SER GLY ARG PRO VAL VAL SEQRES 42 A 609 VAL GLN PRO LEU LEU ALA ALA SER ASP ALA LEU VAL ALA SEQRES 43 A 609 ALA TRP LEU PRO GLY SER GLU GLY GLN GLY VAL THR ASP SEQRES 44 A 609 ALA LEU PHE GLY ASP PHE GLY PHE THR GLY ARG LEU PRO SEQRES 45 A 609 ARG THR TRP PHE LYS SER VAL ASP GLN LEU PRO MET ASN SEQRES 46 A 609 VAL GLY ASP ALA HIS TYR ASP PRO LEU PHE ARG LEU GLY SEQRES 47 A 609 TYR GLY LEU THR THR ASN ALA THR LYS LYS TYR HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET G2F A 704 11 HET SHG A 705 12 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HET GOL A 710 6 HET ACT A 711 4 HET ACT A 712 4 HET ACT A 713 4 HET ACT A 714 4 HET ACT A 715 4 HET ACT A 716 4 HET ACT A 717 4 HET ACT A 718 4 HET ACT A 719 4 HET ACT A 720 4 HET ACT A 721 4 HET SO4 A 722 5 HET SO4 A 723 5 HET SO4 A 724 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOPYRANOSE HETNAM SHG 2-DEOXY-2-FLUORO-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 G2F GLUCOSE; 2-DEOXY-2-FLUORO-GLUCOSE HETSYN SHG 2-DEOXY-2-FLUORO-BETA-D-GLUCOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 SHG GLUCOSE; 2-DEOXY-2-FLUORO-GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 G2F C6 H11 F O5 FORMUL 6 SHG C6 H11 F O5 FORMUL 7 GOL 5(C3 H8 O3) FORMUL 12 ACT 11(C2 H3 O2 1-) FORMUL 23 SO4 3(O4 S 2-) FORMUL 26 HOH *629(H2 O) HELIX 1 AA1 VAL A 3 ASP A 7 5 5 HELIX 2 AA2 PRO A 11 GLY A 21 1 11 HELIX 3 AA3 THR A 24 MET A 32 1 9 HELIX 4 AA4 LEU A 38 ALA A 40 5 3 HELIX 5 AA5 THR A 41 ASN A 48 1 8 HELIX 6 AA6 THR A 66 SER A 83 1 18 HELIX 7 AA7 HIS A 111 THR A 118 1 8 HELIX 8 AA8 ASP A 120 ALA A 137 1 18 HELIX 9 AA9 ARG A 158 SER A 162 5 5 HELIX 10 AB1 ASP A 166 MET A 173 1 8 HELIX 11 AB2 GLU A 175 GLY A 182 1 8 HELIX 12 AB3 GLY A 210 ILE A 218 5 9 HELIX 13 AB4 ASN A 226 HIS A 234 1 9 HELIX 14 AB5 MET A 235 LYS A 244 1 10 HELIX 15 AB6 ASN A 264 THR A 269 1 6 HELIX 16 AB7 ILE A 289 THR A 293 5 5 HELIX 17 AB8 ASP A 299 GLY A 311 1 13 HELIX 18 AB9 LYS A 320 GLY A 334 1 15 HELIX 19 AC1 PRO A 338 MET A 356 1 19 HELIX 20 AC2 ASP A 365 LEU A 372 5 8 HELIX 21 AC3 LYS A 374 LEU A 389 1 16 HELIX 22 AC4 ASN A 422 GLY A 428 1 7 HELIX 23 AC5 THR A 446 VAL A 455 1 10 HELIX 24 AC6 ASP A 468 GLY A 475 1 8 HELIX 25 AC7 THR A 490 ASP A 495 5 6 HELIX 26 AC8 GLY A 505 VAL A 516 1 12 HELIX 27 AC9 VAL A 530 SER A 537 1 8 HELIX 28 AD1 GLY A 550 PHE A 558 1 9 HELIX 29 AD2 SER A 574 LEU A 578 5 5 SHEET 1 AA1 5 TYR A 142 ALA A 143 0 SHEET 2 AA1 5 ILE A 91 ILE A 94 1 N ILE A 94 O TYR A 142 SHEET 3 AA1 5 SER A 52 SER A 55 1 N LEU A 53 O GLY A 93 SHEET 4 AA1 5 THR A 33 GLU A 36 1 N ILE A 35 O SER A 52 SHEET 5 AA1 5 ILE A 315 MET A 316 1 O ILE A 315 N GLN A 34 SHEET 1 AA2 3 CYS A 204 PHE A 208 0 SHEET 2 AA2 3 THR A 248 ILE A 251 1 O MET A 250 N PHE A 208 SHEET 3 AA2 3 PHE A 281 ILE A 283 1 O ILE A 283 N VAL A 249 SHEET 1 AA3 3 ASN A 222 THR A 223 0 SHEET 2 AA3 3 SER A 255 TRP A 256 1 O SER A 255 N THR A 223 SHEET 3 AA3 3 VAL A 259 LYS A 260 -1 O VAL A 259 N TRP A 256 SHEET 1 AA4 6 VAL A 390 ASN A 394 0 SHEET 2 AA4 6 ALA A 539 TRP A 544 -1 O ALA A 542 N VAL A 390 SHEET 3 AA4 6 CYS A 518 ILE A 523 1 N LEU A 522 O VAL A 541 SHEET 4 AA4 6 ALA A 480 GLY A 485 1 N VAL A 484 O ILE A 523 SHEET 5 AA4 6 LYS A 412 ALA A 416 1 N LEU A 414 O ILE A 481 SHEET 6 AA4 6 VAL A 460 ALA A 464 1 O VAL A 460 N ILE A 413 SSBOND 1 CYS A 151 CYS A 159 1555 1555 2.21 SSBOND 2 CYS A 513 CYS A 518 1555 1555 1.97 LINK ND2 ASN A 221 C1 NAG A 703 1555 1555 1.43 LINK ND2 ASN A 498 C1 NAG A 702 1555 1555 1.53 LINK ND2 ASN A 600 C1 NAG A 701 1555 1555 1.43 CISPEP 1 ALA A 145 PRO A 146 0 2.89 CISPEP 2 LYS A 206 HIS A 207 0 -11.09 CISPEP 3 PHE A 208 VAL A 209 0 -3.09 CISPEP 4 THR A 294 PRO A 295 0 -13.09 CISPEP 5 VAL A 317 PRO A 318 0 -6.23 CISPEP 6 LEU A 404 PRO A 405 0 3.65 CISPEP 7 GLU A 503 PRO A 504 0 -7.01 CISPEP 8 LEU A 578 PRO A 579 0 4.18 CRYST1 100.500 100.500 182.689 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005474 0.00000