HEADER PHOTOSYNTHESIS 01-DEC-22 8HLV TITLE BRY-LHCII HOMOTRIMER OF BRYOPSIS CORTICULANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIPHONAXANTHIN CHLOROPHYLL A/B BINDING LIGHT-HARVESTING COMPND 3 COMPLEX II, BRY-LHCB1; COMPND 4 CHAIN: A, B, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRYOPSIS CORTICULANS; SOURCE 3 ORGANISM_TAXID: 325651 KEYWDS LIGHT-HARVESTING COMPLEXES, SIPHONAXANTHIN, SIPHONEIN, PHOTOSYNTHESIS EXPDTA ELECTRON MICROSCOPY AUTHOR Z.H.LI,J.R.SHEN,W.D.WANG REVDAT 2 18-OCT-23 8HLV 1 JRNL REVDAT 1 06-SEP-23 8HLV 0 JRNL AUTH Z.LI,C.ZHOU,S.ZHAO,J.ZHANG,X.LIU,M.SANG,X.QIN,Y.YANG,G.HAN, JRNL AUTH 2 T.KUANG,J.R.SHEN,W.WANG JRNL TITL STRUCTURAL AND FUNCTIONAL PROPERTIES OF DIFFERENT TYPES OF JRNL TITL 2 SIPHONOUS LHCII TRIMERS FROM AN INTERTIDAL GREEN ALGA JRNL TITL 3 BRYOPSIS CORTICULANS. JRNL REF STRUCTURE V. 31 1247 2023 JRNL REFN ISSN 0969-2126 JRNL PMID 37633266 JRNL DOI 10.1016/J.STR.2023.08.001 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.550 REMARK 3 NUMBER OF PARTICLES : 614955 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8HLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033818. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BRYOPSIS CORTICULANS REMARK 245 CHLOROPHYLL A/B-TYPE LIGHT- REMARK 245 HARVESTING COMPLEX II HOMOTRIMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 ALA A -24 REMARK 465 SER A -23 REMARK 465 ALA A -22 REMARK 465 MET A -21 REMARK 465 ILE A -20 REMARK 465 ALA A -19 REMARK 465 GLN A -18 REMARK 465 THR A -17 REMARK 465 VAL A -16 REMARK 465 VAL A -15 REMARK 465 GLY A -14 REMARK 465 ALA A -13 REMARK 465 GLN A -12 REMARK 465 ALA A -11 REMARK 465 ALA A -10 REMARK 465 ARG A -9 REMARK 465 ALA A -8 REMARK 465 THR A -7 REMARK 465 LYS A -6 REMARK 465 GLN A -5 REMARK 465 VAL A -4 REMARK 465 THR A -3 REMARK 465 ARG A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 MET B -25 REMARK 465 ALA B -24 REMARK 465 SER B -23 REMARK 465 ALA B -22 REMARK 465 MET B -21 REMARK 465 ILE B -20 REMARK 465 ALA B -19 REMARK 465 GLN B -18 REMARK 465 THR B -17 REMARK 465 VAL B -16 REMARK 465 VAL B -15 REMARK 465 GLY B -14 REMARK 465 ALA B -13 REMARK 465 GLN B -12 REMARK 465 ALA B -11 REMARK 465 ALA B -10 REMARK 465 ARG B -9 REMARK 465 ALA B -8 REMARK 465 THR B -7 REMARK 465 LYS B -6 REMARK 465 GLN B -5 REMARK 465 VAL B -4 REMARK 465 THR B -3 REMARK 465 ARG B -2 REMARK 465 ALA B -1 REMARK 465 ALA B 0 REMARK 465 MET C -25 REMARK 465 ALA C -24 REMARK 465 SER C -23 REMARK 465 ALA C -22 REMARK 465 MET C -21 REMARK 465 ILE C -20 REMARK 465 ALA C -19 REMARK 465 GLN C -18 REMARK 465 THR C -17 REMARK 465 VAL C -16 REMARK 465 VAL C -15 REMARK 465 GLY C -14 REMARK 465 ALA C -13 REMARK 465 GLN C -12 REMARK 465 ALA C -11 REMARK 465 ALA C -10 REMARK 465 ARG C -9 REMARK 465 ALA C -8 REMARK 465 THR C -7 REMARK 465 LYS C -6 REMARK 465 GLN C -5 REMARK 465 VAL C -4 REMARK 465 THR C -3 REMARK 465 ARG C -2 REMARK 465 ALA C -1 REMARK 465 ALA C 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 GLU B 80 CG CD OE1 OE2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 GLU C 148 CG CD OE1 OE2 REMARK 470 GLU C 196 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 15 34.82 -98.52 REMARK 500 VAL A 108 -70.06 61.19 REMARK 500 GLU A 148 -98.89 55.60 REMARK 500 TYR B 15 34.78 -99.18 REMARK 500 VAL B 108 -69.76 61.46 REMARK 500 GLU B 148 -98.14 55.40 REMARK 500 ASP C 7 30.56 -94.43 REMARK 500 LEU C 102 19.88 58.93 REMARK 500 VAL C 108 -70.20 61.41 REMARK 500 GLU C 148 -98.91 55.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 0UR A 301 REMARK 610 CHL A 306 REMARK 610 CLA A 308 REMARK 610 CHL A 309 REMARK 610 CHL A 310 REMARK 610 CHL A 311 REMARK 610 CLA A 314 REMARK 610 CLA A 315 REMARK 610 CLA A 316 REMARK 610 CLA A 317 REMARK 610 CHL A 318 REMARK 610 LHG A 319 REMARK 610 0UR B 301 REMARK 610 CHL B 306 REMARK 610 CLA B 308 REMARK 610 CHL B 309 REMARK 610 CHL B 310 REMARK 610 CHL B 311 REMARK 610 CLA B 314 REMARK 610 CLA B 315 REMARK 610 CLA B 316 REMARK 610 CLA B 317 REMARK 610 CHL B 318 REMARK 610 LHG B 319 REMARK 610 0UR C 301 REMARK 610 CHL C 306 REMARK 610 CLA C 308 REMARK 610 CHL C 309 REMARK 610 CHL C 310 REMARK 610 CHL C 311 REMARK 610 CLA C 314 REMARK 610 CLA C 315 REMARK 610 CLA C 316 REMARK 610 CLA C 317 REMARK 610 CHL C 318 REMARK 610 LHG C 319 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 11 O REMARK 620 2 CHL A 305 NA 102.0 REMARK 620 3 CHL A 305 NB 91.4 90.9 REMARK 620 4 CHL A 305 NC 79.9 177.9 90.0 REMARK 620 5 CHL A 305 ND 88.6 92.0 177.0 87.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 OE2 REMARK 620 2 CHL A 306 NA 87.2 REMARK 620 3 CHL A 306 NB 86.2 90.4 REMARK 620 4 CHL A 306 NC 91.8 178.6 90.5 REMARK 620 5 CHL A 306 ND 93.2 92.2 177.3 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 CHL A 309 NA 87.5 REMARK 620 3 CHL A 309 NB 96.4 90.7 REMARK 620 4 CHL A 309 NC 93.5 178.7 90.1 REMARK 620 5 CHL A 309 ND 87.0 92.0 175.8 87.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL A 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 128 OE1 REMARK 620 2 CHL A 313 NA 77.3 REMARK 620 3 CHL A 313 NB 82.4 89.1 REMARK 620 4 CHL A 313 NC 104.8 177.9 90.9 REMARK 620 5 CHL A 313 ND 99.7 93.6 176.9 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 169 OE2 REMARK 620 2 CLA A 314 NA 90.1 REMARK 620 3 CLA A 314 NB 81.3 91.6 REMARK 620 4 CLA A 314 NC 92.5 176.5 91.3 REMARK 620 5 CLA A 314 ND 99.6 90.5 177.7 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 316 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 172 OD1 REMARK 620 2 CLA A 316 NA 90.8 REMARK 620 3 CLA A 316 NB 90.3 92.1 REMARK 620 4 CLA A 316 NC 90.9 176.3 91.2 REMARK 620 5 CLA A 316 ND 90.9 90.7 176.9 85.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 317 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 186 OE1 REMARK 620 2 CLA A 317 NA 75.8 REMARK 620 3 CLA A 317 NB 103.9 92.0 REMARK 620 4 CLA A 317 NC 104.8 176.5 91.2 REMARK 620 5 CLA A 317 ND 77.8 90.7 177.1 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA A 315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LHG A 319 O4 REMARK 620 2 CLA A 315 NA 74.2 REMARK 620 3 CLA A 315 NB 69.8 92.1 REMARK 620 4 CLA A 315 NC 107.4 176.6 91.2 REMARK 620 5 CLA A 315 ND 111.1 90.6 177.3 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP B 11 O REMARK 620 2 CHL B 305 NA 102.3 REMARK 620 3 CHL B 305 NB 91.7 90.9 REMARK 620 4 CHL B 305 NC 79.6 177.9 90.0 REMARK 620 5 CHL B 305 ND 88.5 92.0 176.9 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL B 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 53 OE2 REMARK 620 2 CHL B 306 NA 89.3 REMARK 620 3 CHL B 306 NB 88.7 90.4 REMARK 620 4 CHL B 306 NC 90.9 179.1 90.4 REMARK 620 5 CHL B 306 ND 92.3 92.2 177.3 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL B 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 108 O REMARK 620 2 CHL B 309 NA 87.3 REMARK 620 3 CHL B 309 NB 95.1 90.6 REMARK 620 4 CHL B 309 NC 93.8 178.6 90.1 REMARK 620 5 CHL B 309 ND 88.1 92.0 175.9 87.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL B 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 128 OE1 REMARK 620 2 CHL B 313 NA 78.1 REMARK 620 3 CHL B 313 NB 81.6 89.2 REMARK 620 4 CHL B 313 NC 103.9 177.9 90.9 REMARK 620 5 CHL B 313 ND 100.5 93.6 176.9 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA B 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 169 OE2 REMARK 620 2 CLA B 314 NA 92.2 REMARK 620 3 CLA B 314 NB 80.5 91.6 REMARK 620 4 CLA B 314 NC 90.4 176.4 91.2 REMARK 620 5 CLA B 314 ND 100.4 90.5 177.7 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA B 316 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 172 OD1 REMARK 620 2 CLA B 316 NA 90.6 REMARK 620 3 CLA B 316 NB 89.6 92.1 REMARK 620 4 CLA B 316 NC 90.9 176.3 91.2 REMARK 620 5 CLA B 316 ND 91.4 90.8 177.0 85.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA B 317 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 186 OE1 REMARK 620 2 CLA B 317 NA 75.2 REMARK 620 3 CLA B 317 NB 101.3 92.0 REMARK 620 4 CLA B 317 NC 105.7 176.4 91.2 REMARK 620 5 CLA B 317 ND 80.5 90.7 177.0 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA B 315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LHG B 319 O4 REMARK 620 2 CLA B 315 NA 71.6 REMARK 620 3 CLA B 315 NB 73.4 92.1 REMARK 620 4 CLA B 315 NC 109.9 176.6 91.2 REMARK 620 5 CLA B 315 ND 107.6 90.6 177.3 86.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL C 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP C 11 O REMARK 620 2 CHL C 305 NA 99.8 REMARK 620 3 CHL C 305 NB 92.5 90.9 REMARK 620 4 CHL C 305 NC 81.8 178.1 90.0 REMARK 620 5 CHL C 305 ND 87.8 92.0 177.0 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL C 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 53 OE2 REMARK 620 2 CHL C 306 NA 86.4 REMARK 620 3 CHL C 306 NB 87.1 90.4 REMARK 620 4 CHL C 306 NC 92.6 178.6 90.5 REMARK 620 5 CHL C 306 ND 92.3 92.2 177.3 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL C 309 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL C 108 O REMARK 620 2 CHL C 309 NA 86.3 REMARK 620 3 CHL C 309 NB 96.8 90.7 REMARK 620 4 CHL C 309 NC 94.2 179.0 90.1 REMARK 620 5 CHL C 309 ND 86.0 92.0 176.2 87.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CHL C 313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 128 OE1 REMARK 620 2 CHL C 313 NA 77.9 REMARK 620 3 CHL C 313 NB 83.6 89.2 REMARK 620 4 CHL C 313 NC 104.2 177.9 90.9 REMARK 620 5 CHL C 313 ND 98.5 93.6 176.8 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA C 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 169 OE2 REMARK 620 2 CLA C 314 NA 88.2 REMARK 620 3 CLA C 314 NB 80.5 91.5 REMARK 620 4 CLA C 314 NC 94.3 176.5 91.3 REMARK 620 5 CLA C 314 ND 100.5 90.5 177.8 86.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA C 316 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 172 OD1 REMARK 620 2 CLA C 316 NA 91.6 REMARK 620 3 CLA C 316 NB 90.7 92.1 REMARK 620 4 CLA C 316 NC 90.0 176.3 91.2 REMARK 620 5 CLA C 316 ND 90.3 90.7 177.0 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA C 317 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 186 OE1 REMARK 620 2 CLA C 317 NA 75.0 REMARK 620 3 CLA C 317 NB 101.0 91.9 REMARK 620 4 CLA C 317 NC 105.8 176.6 91.2 REMARK 620 5 CLA C 317 ND 80.7 90.8 177.1 86.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA C 315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LHG C 319 O4 REMARK 620 2 CLA C 315 NA 73.4 REMARK 620 3 CLA C 315 NB 71.6 92.2 REMARK 620 4 CLA C 315 NC 108.3 176.6 91.1 REMARK 620 5 CLA C 315 ND 109.3 90.6 177.2 86.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-34883 RELATED DB: EMDB REMARK 900 BRY-LHCII HOMOTRIMER OF BRYOPSIS CORTICULANS DBREF 8HLV A -25 223 PDB 8HLV 8HLV -25 223 DBREF 8HLV B -25 223 PDB 8HLV 8HLV -25 223 DBREF 8HLV C -25 223 PDB 8HLV 8HLV -25 223 SEQRES 1 A 249 MET ALA SER ALA MET ILE ALA GLN THR VAL VAL GLY ALA SEQRES 2 A 249 GLN ALA ALA ARG ALA THR LYS GLN VAL THR ARG ALA ALA SEQRES 3 A 249 VAL GLU PHE TYR GLY PRO ASP ARG ALA LEU TRP LEU GLY SEQRES 4 A 249 PRO TYR SER GLU GLY ALA VAL PRO SER TYR LEU THR GLY SEQRES 5 A 249 GLU PHE PRO GLY ASP TYR GLY TRP ASP SER ALA GLY LEU SEQRES 6 A 249 SER ALA ASP PRO GLU THR PHE ALA ALA ASN ARG GLU LEU SEQRES 7 A 249 GLU LEU ILE HIS ALA ARG TRP ALA MET LEU GLY THR VAL SEQRES 8 A 249 GLY CYS LEU THR PRO GLU ALA LEU GLU LYS TYR GLY GLY SEQRES 9 A 249 VAL GLU PHE GLY GLU ALA VAL TRP PHE LYS ALA GLY SER SEQRES 10 A 249 GLN ILE PHE ALA GLU GLY GLY LEU ASP TYR LEU GLY ASN SEQRES 11 A 249 PRO SER LEU VAL HIS ALA GLN SER ILE LEU ALA ILE CYS SEQRES 12 A 249 TRP THR GLN VAL VAL LEU MET GLY LEU ALA GLU GLY TYR SEQRES 13 A 249 ARG CYS SER GLY GLY PRO LEU GLY GLU ALA THR ASP PRO SEQRES 14 A 249 LEU TYR PRO GLY GLU ALA PHE ASP PRO MET GLY MET ALA SEQRES 15 A 249 ASP ASP PRO GLU THR PHE ALA GLU LEU LYS THR LYS GLU SEQRES 16 A 249 ILE LYS ASN GLY ARG LEU ALA MET PHE ALA MET PHE GLY SEQRES 17 A 249 PHE PHE VAL GLN SER LEU GLN THR GLY LYS GLY PRO VAL SEQRES 18 A 249 GLU CYS TRP ALA GLU HIS ILE ALA ASP PRO VAL ALA ASN SEQRES 19 A 249 ASN GLY PHE VAL TYR ALA THR LYS PHE PHE GLY ALA GLN SEQRES 20 A 249 ILE PHE SEQRES 1 B 249 MET ALA SER ALA MET ILE ALA GLN THR VAL VAL GLY ALA SEQRES 2 B 249 GLN ALA ALA ARG ALA THR LYS GLN VAL THR ARG ALA ALA SEQRES 3 B 249 VAL GLU PHE TYR GLY PRO ASP ARG ALA LEU TRP LEU GLY SEQRES 4 B 249 PRO TYR SER GLU GLY ALA VAL PRO SER TYR LEU THR GLY SEQRES 5 B 249 GLU PHE PRO GLY ASP TYR GLY TRP ASP SER ALA GLY LEU SEQRES 6 B 249 SER ALA ASP PRO GLU THR PHE ALA ALA ASN ARG GLU LEU SEQRES 7 B 249 GLU LEU ILE HIS ALA ARG TRP ALA MET LEU GLY THR VAL SEQRES 8 B 249 GLY CYS LEU THR PRO GLU ALA LEU GLU LYS TYR GLY GLY SEQRES 9 B 249 VAL GLU PHE GLY GLU ALA VAL TRP PHE LYS ALA GLY SER SEQRES 10 B 249 GLN ILE PHE ALA GLU GLY GLY LEU ASP TYR LEU GLY ASN SEQRES 11 B 249 PRO SER LEU VAL HIS ALA GLN SER ILE LEU ALA ILE CYS SEQRES 12 B 249 TRP THR GLN VAL VAL LEU MET GLY LEU ALA GLU GLY TYR SEQRES 13 B 249 ARG CYS SER GLY GLY PRO LEU GLY GLU ALA THR ASP PRO SEQRES 14 B 249 LEU TYR PRO GLY GLU ALA PHE ASP PRO MET GLY MET ALA SEQRES 15 B 249 ASP ASP PRO GLU THR PHE ALA GLU LEU LYS THR LYS GLU SEQRES 16 B 249 ILE LYS ASN GLY ARG LEU ALA MET PHE ALA MET PHE GLY SEQRES 17 B 249 PHE PHE VAL GLN SER LEU GLN THR GLY LYS GLY PRO VAL SEQRES 18 B 249 GLU CYS TRP ALA GLU HIS ILE ALA ASP PRO VAL ALA ASN SEQRES 19 B 249 ASN GLY PHE VAL TYR ALA THR LYS PHE PHE GLY ALA GLN SEQRES 20 B 249 ILE PHE SEQRES 1 C 249 MET ALA SER ALA MET ILE ALA GLN THR VAL VAL GLY ALA SEQRES 2 C 249 GLN ALA ALA ARG ALA THR LYS GLN VAL THR ARG ALA ALA SEQRES 3 C 249 VAL GLU PHE TYR GLY PRO ASP ARG ALA LEU TRP LEU GLY SEQRES 4 C 249 PRO TYR SER GLU GLY ALA VAL PRO SER TYR LEU THR GLY SEQRES 5 C 249 GLU PHE PRO GLY ASP TYR GLY TRP ASP SER ALA GLY LEU SEQRES 6 C 249 SER ALA ASP PRO GLU THR PHE ALA ALA ASN ARG GLU LEU SEQRES 7 C 249 GLU LEU ILE HIS ALA ARG TRP ALA MET LEU GLY THR VAL SEQRES 8 C 249 GLY CYS LEU THR PRO GLU ALA LEU GLU LYS TYR GLY GLY SEQRES 9 C 249 VAL GLU PHE GLY GLU ALA VAL TRP PHE LYS ALA GLY SER SEQRES 10 C 249 GLN ILE PHE ALA GLU GLY GLY LEU ASP TYR LEU GLY ASN SEQRES 11 C 249 PRO SER LEU VAL HIS ALA GLN SER ILE LEU ALA ILE CYS SEQRES 12 C 249 TRP THR GLN VAL VAL LEU MET GLY LEU ALA GLU GLY TYR SEQRES 13 C 249 ARG CYS SER GLY GLY PRO LEU GLY GLU ALA THR ASP PRO SEQRES 14 C 249 LEU TYR PRO GLY GLU ALA PHE ASP PRO MET GLY MET ALA SEQRES 15 C 249 ASP ASP PRO GLU THR PHE ALA GLU LEU LYS THR LYS GLU SEQRES 16 C 249 ILE LYS ASN GLY ARG LEU ALA MET PHE ALA MET PHE GLY SEQRES 17 C 249 PHE PHE VAL GLN SER LEU GLN THR GLY LYS GLY PRO VAL SEQRES 18 C 249 GLU CYS TRP ALA GLU HIS ILE ALA ASP PRO VAL ALA ASN SEQRES 19 C 249 ASN GLY PHE VAL TYR ALA THR LYS PHE PHE GLY ALA GLN SEQRES 20 C 249 ILE PHE HET 0UR A 301 52 HET 0IE A 302 44 HET 0IE A 303 44 HET NEX A 304 44 HET CHL A 305 66 HET CHL A 306 64 HET CLA A 307 65 HET CLA A 308 50 HET CHL A 309 43 HET CHL A 310 51 HET CHL A 311 61 HET CHL A 312 66 HET CHL A 313 66 HET CLA A 314 55 HET CLA A 315 63 HET CLA A 316 45 HET CLA A 317 55 HET CHL A 318 44 HET LHG A 319 43 HET 0UR B 301 52 HET 0IE B 302 44 HET 0IE B 303 44 HET NEX B 304 44 HET CHL B 305 66 HET CHL B 306 64 HET CLA B 307 65 HET CLA B 308 50 HET CHL B 309 43 HET CHL B 310 51 HET CHL B 311 61 HET CHL B 312 66 HET CHL B 313 66 HET CLA B 314 55 HET CLA B 315 63 HET CLA B 316 45 HET CLA B 317 55 HET CHL B 318 47 HET LHG B 319 43 HET 0UR C 301 52 HET 0IE C 302 44 HET 0IE C 303 44 HET NEX C 304 44 HET CHL C 305 66 HET CHL C 306 64 HET CLA C 307 65 HET CLA C 308 50 HET CHL C 309 43 HET CHL C 310 51 HET CHL C 311 61 HET CHL C 312 66 HET CHL C 313 66 HET CLA C 314 55 HET CLA C 315 63 HET CLA C 316 45 HET CLA C 317 55 HET CHL C 318 44 HET LHG C 319 43 HETNAM 0UR SIPHONEIN HETNAM 0IE SIPHONAXANTHIN HETNAM NEX (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R, HETNAM 2 NEX 6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT- HETNAM 3 NEX 1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13, HETNAM 4 NEX 15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3- HETNAM 5 NEX DIOL HETNAM CHL CHLOROPHYLL B HETNAM CLA CHLOROPHYLL A HETNAM LHG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE HETSYN NEX (3S,5R,6R,3'S,5'R,6'S)-5',6'-EPOXY-6,7-DIDEHYDRO- 5,6, HETSYN 2 NEX 5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,5,3'-TRIOL; 9'- HETSYN 3 NEX CIS-NEOXANTHIN FORMUL 4 0UR 3(C52 H76 O5) FORMUL 5 0IE 6(C40 H56 O4) FORMUL 7 NEX 3(C40 H56 O4) FORMUL 8 CHL 24(C55 H70 MG N4 O6 2+) FORMUL 10 CLA 18(C55 H72 MG N4 O5) FORMUL 22 LHG 3(C38 H75 O10 P) HELIX 1 AA1 LEU A 12 SER A 16 5 5 HELIX 2 AA2 ASP A 42 GLY A 77 1 36 HELIX 3 AA3 VAL A 85 ALA A 95 5 11 HELIX 4 AA4 ASP A 100 ASN A 104 5 5 HELIX 5 AA5 SER A 112 GLY A 134 1 23 HELIX 6 AA6 GLY A 147 ASP A 151 5 5 HELIX 7 AA7 ASP A 158 THR A 190 1 33 HELIX 8 AA8 GLY A 193 ILE A 202 1 10 HELIX 9 AA9 ASN A 209 ALA A 214 5 6 HELIX 10 AB1 LEU B 12 SER B 16 5 5 HELIX 11 AB2 ASP B 42 GLY B 77 1 36 HELIX 12 AB3 VAL B 85 GLY B 90 1 6 HELIX 13 AB4 SER B 91 ALA B 95 5 5 HELIX 14 AB5 ASP B 100 ASN B 104 5 5 HELIX 15 AB6 SER B 112 GLY B 134 1 23 HELIX 16 AB7 GLY B 147 ASP B 151 5 5 HELIX 17 AB8 ASP B 158 THR B 190 1 33 HELIX 18 AB9 GLY B 193 ILE B 202 1 10 HELIX 19 AC1 ASN B 209 ALA B 214 5 6 HELIX 20 AC2 LEU C 12 SER C 16 5 5 HELIX 21 AC3 ASP C 42 GLY C 77 1 36 HELIX 22 AC4 VAL C 85 ALA C 95 5 11 HELIX 23 AC5 ASP C 100 ASN C 104 5 5 HELIX 24 AC6 SER C 112 GLY C 134 1 23 HELIX 25 AC7 GLY C 147 ASP C 151 5 5 HELIX 26 AC8 ASP C 158 THR C 190 1 33 HELIX 27 AC9 GLY C 193 ILE C 202 1 10 HELIX 28 AD1 ASN C 209 ALA C 214 5 6 LINK O TRP A 11 MG CHL A 305 1555 1555 2.18 LINK OE2 GLU A 53 MG CHL A 306 1555 1555 2.08 LINK O VAL A 108 MG CHL A 309 1555 1555 2.20 LINK OE1 GLU A 128 MG CHL A 313 1555 1555 2.48 LINK OE2 GLU A 169 MG CLA A 314 1555 1555 2.09 LINK OD1 ASN A 172 MG CLA A 316 1555 1555 2.40 LINK OE1 GLN A 186 MG CLA A 317 1555 1555 2.22 LINK MG CLA A 315 O4 LHG A 319 1555 1555 2.20 LINK O TRP B 11 MG CHL B 305 1555 1555 2.18 LINK OE2 GLU B 53 MG CHL B 306 1555 1555 2.09 LINK O VAL B 108 MG CHL B 309 1555 1555 2.18 LINK OE1 GLU B 128 MG CHL B 313 1555 1555 2.49 LINK OE2 GLU B 169 MG CLA B 314 1555 1555 2.02 LINK OD1 ASN B 172 MG CLA B 316 1555 1555 2.39 LINK OE1 GLN B 186 MG CLA B 317 1555 1555 2.22 LINK MG CLA B 315 O4 LHG B 319 1555 1555 2.20 LINK O TRP C 11 MG CHL C 305 1555 1555 2.18 LINK OE2 GLU C 53 MG CHL C 306 1555 1555 2.09 LINK O VAL C 108 MG CHL C 309 1555 1555 2.24 LINK OE1 GLU C 128 MG CHL C 313 1555 1555 2.58 LINK OE2 GLU C 169 MG CLA C 314 1555 1555 2.06 LINK OD1 ASN C 172 MG CLA C 316 1555 1555 2.38 LINK OE1 GLN C 186 MG CLA C 317 1555 1555 2.22 LINK MG CLA C 315 O4 LHG C 319 1555 1555 2.16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000