data_8HN3 # _entry.id 8HN3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8HN3 pdb_00008hn3 10.2210/pdb8hn3/pdb WWPDB D_1300033886 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8HN3 _pdbx_database_status.recvd_initial_deposition_date 2022-12-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kishimoto, H.' 1 ? 'Azai, C.' 2 ? 'Yamamoto, T.' 3 ? 'Mutoh, R.' 4 ? 'Nakaniwa, T.' 5 ? 'Tanaka, H.' 6 ? 'Kurisu, G.' 7 ? 'Oh-oka, H.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Curr Res Struct Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2665-928X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 100101 _citation.page_last 100101 _citation.title ;Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.crstbi.2023.100101 _citation.pdbx_database_id_PubMed 37180033 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kishimoto, H.' 1 ? primary 'Azai, C.' 2 ? primary 'Yamamoto, T.' 3 ? primary 'Mutoh, R.' 4 ? primary 'Nakaniwa, T.' 5 ? primary 'Tanaka, H.' 6 ? primary 'Miyanoiri, Y.' 7 ? primary 'Kurisu, G.' 8 ? primary 'Oh-Oka, H.' 9 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8HN3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 85.024 _cell.length_a_esd ? _cell.length_b 85.024 _cell.length_b_esd ? _cell.length_c 123.932 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8HN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytochrome c-556' 8256.430 2 ? ? ? ? 2 non-polymer syn 'HEME C' 618.503 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 water nat water 18.015 192 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cytochrome c-555, membrane-bound' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MAEGKTIYEGGCNACHDAGMMGAPKPGDKAAWAPRIAKGEESVIKNTINGLNGMPPKGGNAALTDEQLTNAAKYLISISK _entity_poly.pdbx_seq_one_letter_code_can MAEGKTIYEGGCNACHDAGMMGAPKPGDKAAWAPRIAKGEESVIKNTINGLNGMPPKGGNAALTDEQLTNAAKYLISISK _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLU n 1 4 GLY n 1 5 LYS n 1 6 THR n 1 7 ILE n 1 8 TYR n 1 9 GLU n 1 10 GLY n 1 11 GLY n 1 12 CYS n 1 13 ASN n 1 14 ALA n 1 15 CYS n 1 16 HIS n 1 17 ASP n 1 18 ALA n 1 19 GLY n 1 20 MET n 1 21 MET n 1 22 GLY n 1 23 ALA n 1 24 PRO n 1 25 LYS n 1 26 PRO n 1 27 GLY n 1 28 ASP n 1 29 LYS n 1 30 ALA n 1 31 ALA n 1 32 TRP n 1 33 ALA n 1 34 PRO n 1 35 ARG n 1 36 ILE n 1 37 ALA n 1 38 LYS n 1 39 GLY n 1 40 GLU n 1 41 GLU n 1 42 SER n 1 43 VAL n 1 44 ILE n 1 45 LYS n 1 46 ASN n 1 47 THR n 1 48 ILE n 1 49 ASN n 1 50 GLY n 1 51 LEU n 1 52 ASN n 1 53 GLY n 1 54 MET n 1 55 PRO n 1 56 PRO n 1 57 LYS n 1 58 GLY n 1 59 GLY n 1 60 ASN n 1 61 ALA n 1 62 ALA n 1 63 LEU n 1 64 THR n 1 65 ASP n 1 66 GLU n 1 67 GLN n 1 68 LEU n 1 69 THR n 1 70 ASN n 1 71 ALA n 1 72 ALA n 1 73 LYS n 1 74 TYR n 1 75 LEU n 1 76 ILE n 1 77 SER n 1 78 ILE n 1 79 SER n 1 80 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 80 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CT0073 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chlorobaculum tepidum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1097 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8KG95_CHLTE _struct_ref.pdbx_db_accession Q8KG95 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AEGKTIYEGGCNACHDAGMMGAPKPGDKAAWAPRIAKGEESVIKNTINGLNGMPPKGGNAALTDEQLTNAAKYLISISK _struct_ref.pdbx_align_begin 65 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8HN3 A 2 ? 80 ? Q8KG95 65 ? 143 ? 1 79 2 1 8HN3 B 2 ? 80 ? Q8KG95 65 ? 143 ? 1 79 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8HN3 MET A 1 ? UNP Q8KG95 ? ? 'initiating methionine' 0 1 2 8HN3 MET B 1 ? UNP Q8KG95 ? ? 'initiating methionine' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HEC non-polymer . 'HEME C' ? 'C34 H34 Fe N4 O4' 618.503 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8HN3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 68.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.4 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate trihydrate pH 4.4, 1.8 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details Cryostream _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-07-05 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8HN3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 50.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32195 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 95.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.68 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3113 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.240 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -0.00 _refine.B_iso_max ? _refine.B_iso_mean 20.112 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8HN3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.65 _refine.ls_d_res_low 36.82 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 30276 _refine.ls_number_reflns_R_free 1972 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.94 _refine.ls_percent_reflns_R_free 6.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.15427 _refine.ls_R_factor_R_free 0.17357 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.15304 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.062 _refine.pdbx_overall_ESU_R_Free 0.064 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1,2 _refine.overall_SU_B 0.936 _refine.overall_SU_ML 0.033 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 36.82 _refine_hist.number_atoms_solvent 192 _refine_hist.number_atoms_total 1428 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1130 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 106 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.033 0.019 1264 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 1177 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 3.311 2.082 1731 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.382 3.000 2715 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.875 5.000 158 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 30.121 26.757 37 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.643 15.000 193 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 4.217 15.000 2 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.142 0.200 171 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.039 0.021 1454 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 248 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.048 1.753 639 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.018 1.743 637 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.855 2.608 794 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.855 2.612 795 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.780 1.959 624 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.769 1.959 624 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.864 2.785 938 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.913 15.654 1782 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.570 14.748 1695 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.65 _refine_ls_shell.d_res_low 1.692 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 138 _refine_ls_shell.number_reflns_R_work 2153 _refine_ls_shell.percent_reflns_obs 97.08 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.145 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.183 # _struct.entry_id 8HN3 _struct.title 'Soluble domain of cytochrome c-556 from Chlorobaculum tepidum' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8HN3 _struct_keywords.text 'cytochrome c, electron transport, photosynthesis, green sulfur bacteria, cytochrome bc complex' _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 5 ? H N N 3 ? I N N 6 ? J N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 2 ? GLU A 9 ? ALA A 1 GLU A 8 1 ? 8 HELX_P HELX_P2 AA2 GLY A 11 ? ASP A 17 ? GLY A 10 ASP A 16 1 ? 7 HELX_P HELX_P3 AA3 GLY A 19 ? ALA A 23 ? GLY A 18 ALA A 22 5 ? 5 HELX_P HELX_P4 AA4 ASP A 28 ? LYS A 38 ? ASP A 27 LYS A 37 1 ? 11 HELX_P HELX_P5 AA5 GLY A 39 ? GLY A 50 ? GLY A 38 GLY A 49 1 ? 12 HELX_P HELX_P6 AA6 PRO A 55 ? ASN A 60 ? PRO A 54 ASN A 59 5 ? 6 HELX_P HELX_P7 AA7 THR A 64 ? ILE A 78 ? THR A 63 ILE A 77 1 ? 15 HELX_P HELX_P8 AA8 ALA B 2 ? GLU B 9 ? ALA B 1 GLU B 8 1 ? 8 HELX_P HELX_P9 AA9 CYS B 12 ? ASP B 17 ? CYS B 11 ASP B 16 1 ? 6 HELX_P HELX_P10 AB1 GLY B 19 ? ALA B 23 ? GLY B 18 ALA B 22 5 ? 5 HELX_P HELX_P11 AB2 ASP B 28 ? LYS B 38 ? ASP B 27 LYS B 37 1 ? 11 HELX_P HELX_P12 AB3 GLY B 39 ? GLY B 50 ? GLY B 38 GLY B 49 1 ? 12 HELX_P HELX_P13 AB4 PRO B 55 ? ASN B 60 ? PRO B 54 ASN B 59 5 ? 6 HELX_P HELX_P14 AB5 THR B 64 ? ILE B 78 ? THR B 63 ILE B 77 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 12 SG ? ? ? 1_555 C HEC . CAB ? ? A CYS 11 A HEC 101 1_555 ? ? ? ? ? ? ? 1.883 ? ? covale2 covale none ? A CYS 15 SG ? ? ? 1_555 C HEC . CAC ? ? A CYS 14 A HEC 101 1_555 ? ? ? ? ? ? ? 1.938 ? ? covale3 covale none ? B CYS 12 SG ? ? ? 1_555 F HEC . CAB ? ? B CYS 11 B HEC 101 1_555 ? ? ? ? ? ? ? 1.903 ? ? covale4 covale none ? B CYS 15 SG ? ? ? 1_555 F HEC . CAC ? ? B CYS 14 B HEC 101 1_555 ? ? ? ? ? ? ? 1.920 ? ? metalc1 metalc ? ? A HIS 16 NE2 ? ? ? 1_555 C HEC . FE ? ? A HIS 15 A HEC 101 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc2 metalc ? ? A MET 54 SD ? ? ? 1_555 C HEC . FE ? ? A MET 53 A HEC 101 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc3 metalc ? ? B HIS 16 NE2 ? ? ? 1_555 F HEC . FE ? ? B HIS 15 B HEC 101 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc4 metalc ? ? B MET 54 SD ? ? ? 1_555 F HEC . FE ? ? B MET 53 B HEC 101 1_555 ? ? ? ? ? ? ? 2.315 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _atom_sites.entry_id 8HN3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.011761 _atom_sites.fract_transf_matrix[1][2] 0.006790 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013581 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008069 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 ALA 2 1 1 ALA ALA A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 GLY 4 3 3 GLY GLY A . n A 1 5 LYS 5 4 4 LYS LYS A . n A 1 6 THR 6 5 5 THR THR A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 TYR 8 7 7 TYR TYR A . n A 1 9 GLU 9 8 8 GLU GLU A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 CYS 12 11 11 CYS CYS A . n A 1 13 ASN 13 12 12 ASN ASN A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 CYS 15 14 14 CYS CYS A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 MET 20 19 19 MET MET A . n A 1 21 MET 21 20 20 MET MET A . n A 1 22 GLY 22 21 21 GLY GLY A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 PRO 24 23 23 PRO PRO A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 TRP 32 31 31 TRP TRP A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 ARG 35 34 34 ARG ARG A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 VAL 43 42 42 VAL VAL A . n A 1 44 ILE 44 43 43 ILE ILE A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 ASN 46 45 45 ASN ASN A . n A 1 47 THR 47 46 46 THR THR A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 ASN 49 48 48 ASN ASN A . n A 1 50 GLY 50 49 49 GLY GLY A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 ASN 52 51 51 ASN ASN A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 MET 54 53 53 MET MET A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 PRO 56 55 55 PRO PRO A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 ASN 60 59 59 ASN ASN A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 THR 64 63 63 THR THR A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 GLN 67 66 66 GLN GLN A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 THR 69 68 68 THR THR A . n A 1 70 ASN 70 69 69 ASN ASN A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 ALA 72 71 71 ALA ALA A . n A 1 73 LYS 73 72 72 LYS LYS A . n A 1 74 TYR 74 73 73 TYR TYR A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 SER 79 78 78 SER SER A . n A 1 80 LYS 80 79 79 LYS LYS A . n B 1 1 MET 1 0 0 MET MET B . n B 1 2 ALA 2 1 1 ALA ALA B . n B 1 3 GLU 3 2 2 GLU GLU B . n B 1 4 GLY 4 3 3 GLY GLY B . n B 1 5 LYS 5 4 4 LYS LYS B . n B 1 6 THR 6 5 5 THR THR B . n B 1 7 ILE 7 6 6 ILE ILE B . n B 1 8 TYR 8 7 7 TYR TYR B . n B 1 9 GLU 9 8 8 GLU GLU B . n B 1 10 GLY 10 9 9 GLY GLY B . n B 1 11 GLY 11 10 10 GLY GLY B . n B 1 12 CYS 12 11 11 CYS CYS B . n B 1 13 ASN 13 12 12 ASN ASN B . n B 1 14 ALA 14 13 13 ALA ALA B . n B 1 15 CYS 15 14 14 CYS CYS B . n B 1 16 HIS 16 15 15 HIS HIS B . n B 1 17 ASP 17 16 16 ASP ASP B . n B 1 18 ALA 18 17 17 ALA ALA B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 MET 20 19 19 MET MET B . n B 1 21 MET 21 20 20 MET MET B . n B 1 22 GLY 22 21 21 GLY GLY B . n B 1 23 ALA 23 22 22 ALA ALA B . n B 1 24 PRO 24 23 23 PRO PRO B . n B 1 25 LYS 25 24 24 LYS LYS B . n B 1 26 PRO 26 25 25 PRO PRO B . n B 1 27 GLY 27 26 26 GLY GLY B . n B 1 28 ASP 28 27 27 ASP ASP B . n B 1 29 LYS 29 28 28 LYS LYS B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 ALA 31 30 30 ALA ALA B . n B 1 32 TRP 32 31 31 TRP TRP B . n B 1 33 ALA 33 32 32 ALA ALA B . n B 1 34 PRO 34 33 33 PRO PRO B . n B 1 35 ARG 35 34 34 ARG ARG B . n B 1 36 ILE 36 35 35 ILE ILE B . n B 1 37 ALA 37 36 36 ALA ALA B . n B 1 38 LYS 38 37 37 LYS LYS B . n B 1 39 GLY 39 38 38 GLY GLY B . n B 1 40 GLU 40 39 39 GLU GLU B . n B 1 41 GLU 41 40 40 GLU GLU B . n B 1 42 SER 42 41 41 SER SER B . n B 1 43 VAL 43 42 42 VAL VAL B . n B 1 44 ILE 44 43 43 ILE ILE B . n B 1 45 LYS 45 44 44 LYS LYS B . n B 1 46 ASN 46 45 45 ASN ASN B . n B 1 47 THR 47 46 46 THR THR B . n B 1 48 ILE 48 47 47 ILE ILE B . n B 1 49 ASN 49 48 48 ASN ASN B . n B 1 50 GLY 50 49 49 GLY GLY B . n B 1 51 LEU 51 50 50 LEU LEU B . n B 1 52 ASN 52 51 51 ASN ASN B . n B 1 53 GLY 53 52 52 GLY GLY B . n B 1 54 MET 54 53 53 MET MET B . n B 1 55 PRO 55 54 54 PRO PRO B . n B 1 56 PRO 56 55 55 PRO PRO B . n B 1 57 LYS 57 56 56 LYS LYS B . n B 1 58 GLY 58 57 57 GLY GLY B . n B 1 59 GLY 59 58 58 GLY GLY B . n B 1 60 ASN 60 59 59 ASN ASN B . n B 1 61 ALA 61 60 60 ALA ALA B . n B 1 62 ALA 62 61 61 ALA ALA B . n B 1 63 LEU 63 62 62 LEU LEU B . n B 1 64 THR 64 63 63 THR THR B . n B 1 65 ASP 65 64 64 ASP ASP B . n B 1 66 GLU 66 65 65 GLU GLU B . n B 1 67 GLN 67 66 66 GLN GLN B . n B 1 68 LEU 68 67 67 LEU LEU B . n B 1 69 THR 69 68 68 THR THR B . n B 1 70 ASN 70 69 69 ASN ASN B . n B 1 71 ALA 71 70 70 ALA ALA B . n B 1 72 ALA 72 71 71 ALA ALA B . n B 1 73 LYS 73 72 72 LYS LYS B . n B 1 74 TYR 74 73 73 TYR TYR B . n B 1 75 LEU 75 74 74 LEU LEU B . n B 1 76 ILE 76 75 75 ILE ILE B . n B 1 77 SER 77 76 76 SER SER B . n B 1 78 ILE 78 77 77 ILE ILE B . n B 1 79 SER 79 78 78 SER SER B . n B 1 80 LYS 80 79 79 LYS LYS B . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 ohoka@bio.sci.osaka-u.ac.jp Hirozo Oh-oka ? 'principal investigator/group leader' 0000-0003-1866-7383 3 tana@protein.osaka-u.ac.jp Hideaki Tanaka ? 'principal investigator/group leader' 0000-0003-2035-954X 4 gkurisu@protein.osaka-u.ac.jp Genji Kurisu ? 'principal investigator/group leader' 0000-0002-5354-0807 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC 1 101 80 HEC HEC A . D 3 SO4 1 102 2 SO4 SO4 A . E 4 GOL 1 103 3968 GOL GOL A . F 2 HEC 1 101 80 HEC HEC B . G 5 ACT 1 102 1430 ACT ACT B . H 3 SO4 1 103 1 SO4 SO4 B . I 6 HOH 1 201 30 HOH HOH A . I 6 HOH 2 202 169 HOH HOH A . I 6 HOH 3 203 71 HOH HOH A . I 6 HOH 4 204 9 HOH HOH A . I 6 HOH 5 205 455 HOH HOH A . I 6 HOH 6 206 53 HOH HOH A . I 6 HOH 7 207 11 HOH HOH A . I 6 HOH 8 208 220 HOH HOH A . I 6 HOH 9 209 429 HOH HOH A . I 6 HOH 10 210 51 HOH HOH A . I 6 HOH 11 211 75 HOH HOH A . I 6 HOH 12 212 216 HOH HOH A . I 6 HOH 13 213 38 HOH HOH A . I 6 HOH 14 214 60 HOH HOH A . I 6 HOH 15 215 23 HOH HOH A . I 6 HOH 16 216 91 HOH HOH A . I 6 HOH 17 217 1 HOH HOH A . I 6 HOH 18 218 285 HOH HOH A . I 6 HOH 19 219 185 HOH HOH A . I 6 HOH 20 220 20 HOH HOH A . I 6 HOH 21 221 312 HOH HOH A . I 6 HOH 22 222 100 HOH HOH A . I 6 HOH 23 223 454 HOH HOH A . I 6 HOH 24 224 115 HOH HOH A . I 6 HOH 25 225 10 HOH HOH A . I 6 HOH 26 226 93 HOH HOH A . I 6 HOH 27 227 467 HOH HOH A . I 6 HOH 28 228 22 HOH HOH A . I 6 HOH 29 229 152 HOH HOH A . I 6 HOH 30 230 438 HOH HOH A . I 6 HOH 31 231 284 HOH HOH A . I 6 HOH 32 232 25 HOH HOH A . I 6 HOH 33 233 14 HOH HOH A . I 6 HOH 34 234 6 HOH HOH A . I 6 HOH 35 235 186 HOH HOH A . I 6 HOH 36 236 16 HOH HOH A . I 6 HOH 37 237 116 HOH HOH A . I 6 HOH 38 238 39 HOH HOH A . I 6 HOH 39 239 231 HOH HOH A . I 6 HOH 40 240 70 HOH HOH A . I 6 HOH 41 241 283 HOH HOH A . I 6 HOH 42 242 4 HOH HOH A . I 6 HOH 43 243 341 HOH HOH A . I 6 HOH 44 244 311 HOH HOH A . I 6 HOH 45 245 114 HOH HOH A . I 6 HOH 46 246 19 HOH HOH A . I 6 HOH 47 247 35 HOH HOH A . I 6 HOH 48 248 280 HOH HOH A . I 6 HOH 49 249 58 HOH HOH A . I 6 HOH 50 250 140 HOH HOH A . I 6 HOH 51 251 126 HOH HOH A . I 6 HOH 52 252 187 HOH HOH A . I 6 HOH 53 253 262 HOH HOH A . I 6 HOH 54 254 80 HOH HOH A . I 6 HOH 55 255 3 HOH HOH A . I 6 HOH 56 256 81 HOH HOH A . I 6 HOH 57 257 33 HOH HOH A . I 6 HOH 58 258 445 HOH HOH A . I 6 HOH 59 259 87 HOH HOH A . I 6 HOH 60 260 66 HOH HOH A . I 6 HOH 61 261 108 HOH HOH A . I 6 HOH 62 262 457 HOH HOH A . I 6 HOH 63 263 270 HOH HOH A . I 6 HOH 64 264 127 HOH HOH A . I 6 HOH 65 265 333 HOH HOH A . I 6 HOH 66 266 102 HOH HOH A . I 6 HOH 67 267 119 HOH HOH A . I 6 HOH 68 268 190 HOH HOH A . I 6 HOH 69 269 402 HOH HOH A . I 6 HOH 70 270 401 HOH HOH A . I 6 HOH 71 271 273 HOH HOH A . I 6 HOH 72 272 320 HOH HOH A . I 6 HOH 73 273 92 HOH HOH A . I 6 HOH 74 274 157 HOH HOH A . I 6 HOH 75 275 227 HOH HOH A . I 6 HOH 76 276 160 HOH HOH A . I 6 HOH 77 277 154 HOH HOH A . I 6 HOH 78 278 453 HOH HOH A . I 6 HOH 79 279 195 HOH HOH A . I 6 HOH 80 280 138 HOH HOH A . I 6 HOH 81 281 132 HOH HOH A . I 6 HOH 82 282 335 HOH HOH A . I 6 HOH 83 283 77 HOH HOH A . I 6 HOH 84 284 463 HOH HOH A . I 6 HOH 85 285 179 HOH HOH A . I 6 HOH 86 286 391 HOH HOH A . I 6 HOH 87 287 313 HOH HOH A . I 6 HOH 88 288 385 HOH HOH A . I 6 HOH 89 289 106 HOH HOH A . I 6 HOH 90 290 192 HOH HOH A . I 6 HOH 91 291 133 HOH HOH A . I 6 HOH 92 292 101 HOH HOH A . I 6 HOH 93 293 389 HOH HOH A . I 6 HOH 94 294 144 HOH HOH A . I 6 HOH 95 295 120 HOH HOH A . I 6 HOH 96 296 130 HOH HOH A . I 6 HOH 97 297 134 HOH HOH A . I 6 HOH 98 298 263 HOH HOH A . J 6 HOH 1 201 461 HOH HOH B . J 6 HOH 2 202 121 HOH HOH B . J 6 HOH 3 203 275 HOH HOH B . J 6 HOH 4 204 155 HOH HOH B . J 6 HOH 5 205 464 HOH HOH B . J 6 HOH 6 206 189 HOH HOH B . J 6 HOH 7 207 78 HOH HOH B . J 6 HOH 8 208 56 HOH HOH B . J 6 HOH 9 209 105 HOH HOH B . J 6 HOH 10 210 425 HOH HOH B . J 6 HOH 11 211 110 HOH HOH B . J 6 HOH 12 212 24 HOH HOH B . J 6 HOH 13 213 2 HOH HOH B . J 6 HOH 14 214 269 HOH HOH B . J 6 HOH 15 215 42 HOH HOH B . J 6 HOH 16 216 459 HOH HOH B . J 6 HOH 17 217 49 HOH HOH B . J 6 HOH 18 218 136 HOH HOH B . J 6 HOH 19 219 41 HOH HOH B . J 6 HOH 20 220 31 HOH HOH B . J 6 HOH 21 221 387 HOH HOH B . J 6 HOH 22 222 28 HOH HOH B . J 6 HOH 23 223 45 HOH HOH B . J 6 HOH 24 224 90 HOH HOH B . J 6 HOH 25 225 12 HOH HOH B . J 6 HOH 26 226 37 HOH HOH B . J 6 HOH 27 227 83 HOH HOH B . J 6 HOH 28 228 86 HOH HOH B . J 6 HOH 29 229 334 HOH HOH B . J 6 HOH 30 230 288 HOH HOH B . J 6 HOH 31 231 265 HOH HOH B . J 6 HOH 32 232 76 HOH HOH B . J 6 HOH 33 233 13 HOH HOH B . J 6 HOH 34 234 7 HOH HOH B . J 6 HOH 35 235 374 HOH HOH B . J 6 HOH 36 236 40 HOH HOH B . J 6 HOH 37 237 112 HOH HOH B . J 6 HOH 38 238 258 HOH HOH B . J 6 HOH 39 239 339 HOH HOH B . J 6 HOH 40 240 97 HOH HOH B . J 6 HOH 41 241 73 HOH HOH B . J 6 HOH 42 242 15 HOH HOH B . J 6 HOH 43 243 252 HOH HOH B . J 6 HOH 44 244 50 HOH HOH B . J 6 HOH 45 245 57 HOH HOH B . J 6 HOH 46 246 72 HOH HOH B . J 6 HOH 47 247 178 HOH HOH B . J 6 HOH 48 248 297 HOH HOH B . J 6 HOH 49 249 18 HOH HOH B . J 6 HOH 50 250 69 HOH HOH B . J 6 HOH 51 251 139 HOH HOH B . J 6 HOH 52 252 128 HOH HOH B . J 6 HOH 53 253 123 HOH HOH B . J 6 HOH 54 254 17 HOH HOH B . J 6 HOH 55 255 430 HOH HOH B . J 6 HOH 56 256 460 HOH HOH B . J 6 HOH 57 257 431 HOH HOH B . J 6 HOH 58 258 444 HOH HOH B . J 6 HOH 59 259 287 HOH HOH B . J 6 HOH 60 260 376 HOH HOH B . J 6 HOH 61 261 54 HOH HOH B . J 6 HOH 62 262 146 HOH HOH B . J 6 HOH 63 263 32 HOH HOH B . J 6 HOH 64 264 68 HOH HOH B . J 6 HOH 65 265 55 HOH HOH B . J 6 HOH 66 266 129 HOH HOH B . J 6 HOH 67 267 67 HOH HOH B . J 6 HOH 68 268 305 HOH HOH B . J 6 HOH 69 269 202 HOH HOH B . J 6 HOH 70 270 147 HOH HOH B . J 6 HOH 71 271 442 HOH HOH B . J 6 HOH 72 272 375 HOH HOH B . J 6 HOH 73 273 61 HOH HOH B . J 6 HOH 74 274 113 HOH HOH B . J 6 HOH 75 275 209 HOH HOH B . J 6 HOH 76 276 433 HOH HOH B . J 6 HOH 77 277 118 HOH HOH B . J 6 HOH 78 278 64 HOH HOH B . J 6 HOH 79 279 99 HOH HOH B . J 6 HOH 80 280 466 HOH HOH B . J 6 HOH 81 281 408 HOH HOH B . J 6 HOH 82 282 167 HOH HOH B . J 6 HOH 83 283 52 HOH HOH B . J 6 HOH 84 284 406 HOH HOH B . J 6 HOH 85 285 188 HOH HOH B . J 6 HOH 86 286 306 HOH HOH B . J 6 HOH 87 287 98 HOH HOH B . J 6 HOH 88 288 111 HOH HOH B . J 6 HOH 89 289 268 HOH HOH B . J 6 HOH 90 290 217 HOH HOH B . J 6 HOH 91 291 266 HOH HOH B . J 6 HOH 92 292 137 HOH HOH B . J 6 HOH 93 293 407 HOH HOH B . J 6 HOH 94 294 151 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,I 2 1 B,F,G,H,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 223 ? I HOH . 2 1 A HOH 255 ? I HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 16 ? A HIS 15 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 NA ? C HEC . ? A HEC 101 ? 1_555 88.7 ? 2 NE2 ? A HIS 16 ? A HIS 15 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 NB ? C HEC . ? A HEC 101 ? 1_555 91.4 ? 3 NA ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 NB ? C HEC . ? A HEC 101 ? 1_555 91.9 ? 4 NE2 ? A HIS 16 ? A HIS 15 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 NC ? C HEC . ? A HEC 101 ? 1_555 90.6 ? 5 NA ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 NC ? C HEC . ? A HEC 101 ? 1_555 179.0 ? 6 NB ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 NC ? C HEC . ? A HEC 101 ? 1_555 88.8 ? 7 NE2 ? A HIS 16 ? A HIS 15 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 ND ? C HEC . ? A HEC 101 ? 1_555 87.2 ? 8 NA ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 ND ? C HEC . ? A HEC 101 ? 1_555 88.3 ? 9 NB ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 ND ? C HEC . ? A HEC 101 ? 1_555 178.5 ? 10 NC ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 ND ? C HEC . ? A HEC 101 ? 1_555 91.0 ? 11 NE2 ? A HIS 16 ? A HIS 15 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 SD ? A MET 54 ? A MET 53 ? 1_555 175.2 ? 12 NA ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 SD ? A MET 54 ? A MET 53 ? 1_555 95.2 ? 13 NB ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 SD ? A MET 54 ? A MET 53 ? 1_555 85.9 ? 14 NC ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 SD ? A MET 54 ? A MET 53 ? 1_555 85.5 ? 15 ND ? C HEC . ? A HEC 101 ? 1_555 FE ? C HEC . ? A HEC 101 ? 1_555 SD ? A MET 54 ? A MET 53 ? 1_555 95.6 ? 16 NE2 ? B HIS 16 ? B HIS 15 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 NA ? F HEC . ? B HEC 101 ? 1_555 89.1 ? 17 NE2 ? B HIS 16 ? B HIS 15 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 NB ? F HEC . ? B HEC 101 ? 1_555 90.1 ? 18 NA ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 NB ? F HEC . ? B HEC 101 ? 1_555 90.4 ? 19 NE2 ? B HIS 16 ? B HIS 15 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 NC ? F HEC . ? B HEC 101 ? 1_555 90.9 ? 20 NA ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 NC ? F HEC . ? B HEC 101 ? 1_555 178.7 ? 21 NB ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 NC ? F HEC . ? B HEC 101 ? 1_555 90.9 ? 22 NE2 ? B HIS 16 ? B HIS 15 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 ND ? F HEC . ? B HEC 101 ? 1_555 89.5 ? 23 NA ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 ND ? F HEC . ? B HEC 101 ? 1_555 89.5 ? 24 NB ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 ND ? F HEC . ? B HEC 101 ? 1_555 179.5 ? 25 NC ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 ND ? F HEC . ? B HEC 101 ? 1_555 89.1 ? 26 NE2 ? B HIS 16 ? B HIS 15 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 SD ? B MET 54 ? B MET 53 ? 1_555 175.9 ? 27 NA ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 SD ? B MET 54 ? B MET 53 ? 1_555 94.5 ? 28 NB ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 SD ? B MET 54 ? B MET 53 ? 1_555 88.0 ? 29 NC ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 SD ? B MET 54 ? B MET 53 ? 1_555 85.6 ? 30 ND ? F HEC . ? B HEC 101 ? 1_555 FE ? F HEC . ? B HEC 101 ? 1_555 SD ? B MET 54 ? B MET 53 ? 1_555 92.5 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-07-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _pdbx_entry_details.entry_id 8HN3 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 37 ? ? O A HOH 201 ? ? 1.28 2 1 OXT B ACT 102 ? ? O B HOH 201 ? ? 2.07 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 245 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 281 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 10_666 _pdbx_validate_symm_contact.dist 2.09 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 2 ? ? OE1 A GLU 2 ? ? 1.360 1.252 0.108 0.011 N 2 1 CD A GLU 2 ? ? OE2 A GLU 2 ? ? 1.180 1.252 -0.072 0.011 N 3 1 CG B GLU 65 ? ? CD B GLU 65 ? ? 1.394 1.515 -0.121 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A MET 0 ? ? CB A MET 0 ? ? CG A MET 0 ? ? 123.89 113.30 10.59 1.70 N 2 1 CG A MET 19 ? ? SD A MET 19 ? ? CE A MET 19 ? ? 89.35 100.20 -10.85 1.60 N 3 1 CB A ASP 64 ? ? CG A ASP 64 ? ? OD1 A ASP 64 ? ? 124.74 118.30 6.44 0.90 N 4 1 CB B ASP 64 ? ? CG B ASP 64 ? ? OD1 B ASP 64 ? ? 125.28 118.30 6.98 0.90 N 5 1 OE1 B GLU 65 ? ? CD B GLU 65 ? ? OE2 B GLU 65 ? ? 132.66 123.30 9.36 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 51 ? ? 54.37 -122.34 2 1 ASN B 51 ? ? 56.20 -126.80 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 40 ? CG ? A GLU 41 CG 2 1 Y 1 A GLU 40 ? CD ? A GLU 41 CD 3 1 Y 1 A GLU 40 ? OE1 ? A GLU 41 OE1 4 1 Y 1 A GLU 40 ? OE2 ? A GLU 41 OE2 5 1 Y 1 A LYS 44 ? CD ? A LYS 45 CD 6 1 Y 1 A LYS 44 ? CE ? A LYS 45 CE 7 1 Y 1 A LYS 44 ? NZ ? A LYS 45 NZ 8 1 Y 1 B GLU 2 ? OE2 ? B GLU 3 OE2 9 1 Y 1 B LYS 28 ? NZ ? B LYS 29 NZ 10 1 Y 1 B LYS 37 ? NZ ? B LYS 38 NZ 11 1 Y 1 B GLU 40 ? CD ? B GLU 41 CD 12 1 Y 1 B GLU 40 ? OE1 ? B GLU 41 OE1 13 1 Y 1 B GLU 40 ? OE2 ? B GLU 41 OE2 14 1 Y 1 B LYS 44 ? CD ? B LYS 45 CD 15 1 Y 1 B LYS 44 ? CE ? B LYS 45 CE 16 1 Y 1 B LYS 44 ? NZ ? B LYS 45 NZ # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 15K21122 1 'Japan Society for the Promotion of Science (JSPS)' Japan T18K061530 2 'Japan Science and Technology' Japan JPMJCR20E1 3 'Japan Society for the Promotion of Science (JSPS)' Japan 19H04724 4 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id HEC _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id HEC _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'HEME C' HEC 3 'SULFATE ION' SO4 4 GLYCEROL GOL 5 'ACETATE ION' ACT 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #