HEADER VIRAL PROTEIN/IMMUNE SYSTEM 07-DEC-22 8HN6 TITLE CRYSTAL STRUCTURE OF MONOCLONAL ANTIBODY COMPLEXED WITH SARS-COV-2 RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF MONOCLONAL ANTIBODY 3G10; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF MONOCLONAL ANTIBODY 3G10; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 15 2; SOURCE 16 ORGANISM_TAXID: 2697049; SOURCE 17 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS SARS-COV-2, RBD, MONOCLONAL ANTIBODY, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.QI,Y.CHEN REVDAT 4 23-OCT-24 8HN6 1 REMARK REVDAT 3 07-JUN-23 8HN6 1 JRNL REVDAT 2 24-MAY-23 8HN6 1 COMPND JRNL REVDAT 1 17-MAY-23 8HN6 0 JRNL AUTH Z.WANG,D.LI,Y.CHEN,Y.SUN,C.JIN,C.HU,Y.FENG,J.SU,L.REN,Y.HAO, JRNL AUTH 2 S.WANG,M.ZHU,Y.LIU,J.QI,B.ZHU,Y.SHAO JRNL TITL CHARACTERIZATION OF RBD-SPECIFIC CROSS-NEUTRALIZING JRNL TITL 2 ANTIBODIES RESPONSES AGAINST SARS-COV-2 VARIANTS FROM JRNL TITL 3 COVID-19 CONVALESCENTS. JRNL REF FRONT IMMUNOL V. 14 60283 2023 JRNL REFN ESSN 1664-3224 JRNL PMID 37234155 JRNL DOI 10.3389/FIMMU.2023.1160283 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 66669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 3111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4300 - 5.7800 0.99 3073 149 0.1833 0.1805 REMARK 3 2 5.7800 - 4.6000 1.00 2955 149 0.1483 0.1723 REMARK 3 3 4.6000 - 4.0200 1.00 2944 136 0.1426 0.1521 REMARK 3 4 4.0200 - 3.6500 1.00 2933 134 0.1633 0.1954 REMARK 3 5 3.6500 - 3.3900 1.00 2909 157 0.1819 0.1895 REMARK 3 6 3.3900 - 3.1900 1.00 2901 142 0.1926 0.2005 REMARK 3 7 3.1900 - 3.0300 1.00 2916 129 0.1965 0.2441 REMARK 3 8 3.0300 - 2.9000 1.00 2909 125 0.2073 0.2389 REMARK 3 9 2.9000 - 2.7900 1.00 2880 146 0.2043 0.2494 REMARK 3 10 2.7900 - 2.6900 1.00 2899 134 0.2228 0.2561 REMARK 3 11 2.6900 - 2.6100 1.00 2865 157 0.2376 0.2494 REMARK 3 12 2.6100 - 2.5300 1.00 2868 157 0.2204 0.2716 REMARK 3 13 2.5300 - 2.4700 0.99 2853 139 0.2214 0.2635 REMARK 3 14 2.4700 - 2.4100 1.00 2839 142 0.2320 0.2648 REMARK 3 15 2.4100 - 2.3500 1.00 2879 150 0.2293 0.2519 REMARK 3 16 2.3500 - 2.3000 0.99 2878 137 0.2404 0.2735 REMARK 3 17 2.3000 - 2.2600 0.99 2840 129 0.2413 0.2348 REMARK 3 18 2.2600 - 2.2100 0.99 2886 135 0.2369 0.3121 REMARK 3 19 2.2100 - 2.1700 0.99 2868 135 0.2561 0.2616 REMARK 3 20 2.1700 - 2.1400 0.99 2819 154 0.2537 0.2931 REMARK 3 21 2.1400 - 2.1000 0.99 2854 145 0.2720 0.3146 REMARK 3 22 2.1000 - 2.0700 0.98 2790 130 0.2818 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.213 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6668 REMARK 3 ANGLE : 1.097 9066 REMARK 3 CHIRALITY : 0.075 985 REMARK 3 PLANARITY : 0.006 1171 REMARK 3 DIHEDRAL : 13.268 2364 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -39.7220 -20.8125 -20.8884 REMARK 3 T TENSOR REMARK 3 T11: 0.4130 T22: 0.3176 REMARK 3 T33: 0.3438 T12: 0.0038 REMARK 3 T13: -0.0221 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 1.3117 L22: 2.4965 REMARK 3 L33: 1.6677 L12: -0.0533 REMARK 3 L13: 0.3392 L23: -0.9317 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: 0.1630 S13: -0.2210 REMARK 3 S21: -0.3877 S22: -0.0753 S23: 0.1218 REMARK 3 S31: 0.3884 S32: -0.0896 S33: 0.0266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -31.8647 -14.8008 -0.8992 REMARK 3 T TENSOR REMARK 3 T11: 0.2541 T22: 0.2544 REMARK 3 T33: 0.2705 T12: -0.0081 REMARK 3 T13: 0.0076 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 2.3087 L22: 1.8060 REMARK 3 L33: 2.5226 L12: 0.2836 REMARK 3 L13: -0.1895 L23: -0.8432 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0989 S13: -0.0440 REMARK 3 S21: 0.0694 S22: -0.0653 S23: -0.0116 REMARK 3 S31: 0.0518 S32: -0.0736 S33: 0.0557 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -10.2836 -23.8961 -42.3956 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.3289 REMARK 3 T33: 0.3055 T12: -0.0104 REMARK 3 T13: -0.0117 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.6734 L22: 1.2509 REMARK 3 L33: 2.8427 L12: -0.4356 REMARK 3 L13: 0.2265 L23: -0.7462 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: 0.1568 S13: 0.0418 REMARK 3 S21: -0.0514 S22: 0.1326 S23: 0.1419 REMARK 3 S31: 0.0635 S32: -0.1817 S33: -0.1018 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 4.6753 -9.2783 -34.6671 REMARK 3 T TENSOR REMARK 3 T11: 0.2806 T22: 0.2871 REMARK 3 T33: 0.2903 T12: -0.0204 REMARK 3 T13: 0.0068 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 1.9185 L22: 2.4351 REMARK 3 L33: 3.3327 L12: -0.2762 REMARK 3 L13: -0.7672 L23: 0.3063 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.0422 S13: 0.1413 REMARK 3 S21: -0.0080 S22: 0.0935 S23: -0.0675 REMARK 3 S31: -0.2192 S32: 0.1810 S33: -0.1746 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -21.0010 4.9751 -27.7653 REMARK 3 T TENSOR REMARK 3 T11: 0.3511 T22: 0.2824 REMARK 3 T33: 0.3410 T12: 0.0444 REMARK 3 T13: 0.0315 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.6494 L22: 0.8122 REMARK 3 L33: 2.1823 L12: -0.3210 REMARK 3 L13: -1.2946 L23: -0.0655 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: 0.0675 S13: 0.2661 REMARK 3 S21: -0.1583 S22: -0.0972 S23: -0.1066 REMARK 3 S31: -0.2160 S32: 0.1341 S33: -0.0620 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): -8.8775 -30.6542 -10.3599 REMARK 3 T TENSOR REMARK 3 T11: 0.3274 T22: 0.3127 REMARK 3 T33: 0.2783 T12: 0.0600 REMARK 3 T13: -0.0174 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.8669 L22: 0.9549 REMARK 3 L33: 1.6679 L12: -0.2244 REMARK 3 L13: -1.1318 L23: 0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0786 S12: -0.1854 S13: -0.0619 REMARK 3 S21: 0.2188 S22: 0.0494 S23: 0.0661 REMARK 3 S31: 0.1156 S32: 0.0286 S33: 0.0311 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 16-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 28.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350,0.1 M HEPES,0.2 M LPROLINE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 104.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.86500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.86500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.88000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.34000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.86500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.88000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.34000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.86500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 221 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR E 369 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE E 374 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE D 7 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS F 458 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 95 N - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 100 -27.09 63.67 REMARK 500 SER B 30 -114.65 51.52 REMARK 500 ALA B 51 -26.56 70.30 REMARK 500 SER B 52 -2.76 -144.29 REMARK 500 ALA B 84 -178.74 -172.00 REMARK 500 PRO B 95 84.65 -60.95 REMARK 500 SER E 373 98.48 -41.16 REMARK 500 PHE E 374 46.25 -96.42 REMARK 500 SER E 375 -70.60 -0.54 REMARK 500 ASN E 422 -53.49 -123.61 REMARK 500 ASP E 428 32.99 -93.09 REMARK 500 CYS E 525 -53.46 -122.77 REMARK 500 SER C 100 -47.62 66.09 REMARK 500 SER D 30 -115.89 51.27 REMARK 500 ALA D 51 -23.44 70.60 REMARK 500 SER D 52 -3.30 -144.25 REMARK 500 PRO D 95 71.69 -66.52 REMARK 500 ALA F 352 41.40 -103.01 REMARK 500 ALA F 372 -54.67 80.82 REMARK 500 SER F 373 30.01 -80.04 REMARK 500 ASN F 388 8.54 -65.14 REMARK 500 ASP F 389 20.78 -146.52 REMARK 500 ASN F 422 -52.70 -122.46 REMARK 500 ASP F 428 34.87 -99.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HN6 A 2 118 PDB 8HN6 8HN6 2 118 DBREF 8HN6 B 0 107 PDB 8HN6 8HN6 0 107 DBREF 8HN6 E 333 527 UNP P0DTC2 SPIKE_SARS2 333 527 DBREF 8HN6 C 2 118 PDB 8HN6 8HN6 2 118 DBREF 8HN6 D 0 107 PDB 8HN6 8HN6 0 107 DBREF 8HN6 F 333 527 UNP P0DTC2 SPIKE_SARS2 333 527 SEQRES 1 A 117 VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN PRO SEQRES 2 A 117 GLY GLU SER LEU ARG LEU SER CYS ALA ALA SER GLY LEU SEQRES 3 A 117 THR VAL SER SER ASN TYR MET SER TRP VAL ARG GLN ALA SEQRES 4 A 117 PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TYR ALA SEQRES 5 A 117 GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY ARG SEQRES 6 A 117 PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU TYR SEQRES 7 A 117 LEU GLN MET ASN SER LEU ARG ALA GLU ASP MET ALA ILE SEQRES 8 A 117 TYR TYR CYS ALA ARG ASP LEU SER TYR TYR GLY MET ASP SEQRES 9 A 117 VAL TRP GLY GLN GLY THR THR VAL THR VAL SER SER ALA SEQRES 1 B 108 MET ASP ILE GLN LEU THR GLN PHE PRO PHE SER LEU SER SEQRES 2 B 108 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 B 108 SER GLN GLY ILE SER THR TYR LEU ALA TRP TYR GLN GLN SEQRES 4 B 108 LYS PRO GLY ARG ALA PRO LYS LEU LEU ILE TYR ALA ALA SEQRES 5 B 108 SER THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 B 108 SER GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER SEQRES 7 B 108 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN LEU SEQRES 8 B 108 LEU ASN SER TYR PRO VAL HIS PHE GLY GLN GLY THR LYS SEQRES 9 B 108 LEU GLU ILE LYS SEQRES 1 E 195 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 E 195 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 E 195 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 E 195 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 E 195 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 E 195 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 E 195 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 E 195 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 E 195 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 E 195 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 E 195 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 E 195 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 E 195 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 E 195 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 E 195 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 1 C 117 VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN PRO SEQRES 2 C 117 GLY GLU SER LEU ARG LEU SER CYS ALA ALA SER GLY LEU SEQRES 3 C 117 THR VAL SER SER ASN TYR MET SER TRP VAL ARG GLN ALA SEQRES 4 C 117 PRO GLY LYS GLY LEU GLU TRP VAL SER VAL ILE TYR ALA SEQRES 5 C 117 GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY ARG SEQRES 6 C 117 PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU TYR SEQRES 7 C 117 LEU GLN MET ASN SER LEU ARG ALA GLU ASP MET ALA ILE SEQRES 8 C 117 TYR TYR CYS ALA ARG ASP LEU SER TYR TYR GLY MET ASP SEQRES 9 C 117 VAL TRP GLY GLN GLY THR THR VAL THR VAL SER SER ALA SEQRES 1 D 108 MET ASP ILE GLN LEU THR GLN PHE PRO PHE SER LEU SER SEQRES 2 D 108 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 D 108 SER GLN GLY ILE SER THR TYR LEU ALA TRP TYR GLN GLN SEQRES 4 D 108 LYS PRO GLY ARG ALA PRO LYS LEU LEU ILE TYR ALA ALA SEQRES 5 D 108 SER THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 D 108 SER GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER SEQRES 7 D 108 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN LEU SEQRES 8 D 108 LEU ASN SER TYR PRO VAL HIS PHE GLY GLN GLY THR LYS SEQRES 9 D 108 LEU GLU ILE LYS SEQRES 1 F 195 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 F 195 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 F 195 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 F 195 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 F 195 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 F 195 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 F 195 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 F 195 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 F 195 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 F 195 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 F 195 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 F 195 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 F 195 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 F 195 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 F 195 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO FORMUL 7 HOH *505(H2 O) HELIX 1 AA1 THR A 28 ASN A 32 5 5 HELIX 2 AA2 ASP A 61 LYS A 64 5 4 HELIX 3 AA3 ARG A 86 MET A 90 5 5 HELIX 4 AA4 GLN B 79 PHE B 83 5 5 HELIX 5 AA5 PRO E 337 ASN E 343 1 7 HELIX 6 AA6 SER E 349 TRP E 353 5 5 HELIX 7 AA7 TYR E 365 SER E 371 1 7 HELIX 8 AA8 SER E 383 LEU E 390 5 8 HELIX 9 AA9 ASP E 405 ILE E 410 5 6 HELIX 10 AB1 GLY E 416 ASN E 422 1 7 HELIX 11 AB2 SER E 438 SER E 443 1 6 HELIX 12 AB3 GLY E 502 TYR E 505 5 4 HELIX 13 AB4 THR C 28 ASN C 32 5 5 HELIX 14 AB5 ASP C 61 LYS C 64 5 4 HELIX 15 AB6 ARG C 86 MET C 90 5 5 HELIX 16 AB7 GLN D 79 PHE D 83 5 5 HELIX 17 AB8 PHE F 338 ASN F 343 1 6 HELIX 18 AB9 TYR F 365 ASN F 370 1 6 HELIX 19 AC1 SER F 383 ASP F 389 5 7 HELIX 20 AC2 ASP F 405 ILE F 410 5 6 HELIX 21 AC3 GLY F 416 ASN F 422 1 7 HELIX 22 AC4 SER F 438 SER F 443 1 6 HELIX 23 AC5 GLY F 502 TYR F 505 5 4 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 111 VAL A 115 1 O THR A 114 N VAL A 12 SHEET 3 AA2 6 ALA A 91 ASP A 98 -1 N TYR A 93 O THR A 111 SHEET 4 AA2 6 TYR A 33 GLN A 39 -1 N VAL A 37 O TYR A 94 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 57 TYR A 59 -1 O PHE A 58 N VAL A 50 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 111 VAL A 115 1 O THR A 114 N VAL A 12 SHEET 3 AA3 4 ALA A 91 ASP A 98 -1 N TYR A 93 O THR A 111 SHEET 4 AA3 4 MET A 104 TRP A 107 -1 O VAL A 106 N ARG A 97 SHEET 1 AA4 4 LEU B 4 PHE B 7 0 SHEET 2 AA4 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA4 4 GLU B 70 ILE B 75 -1 O PHE B 71 N CYS B 23 SHEET 4 AA4 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 AA5 6 SER B 10 ALA B 13 0 SHEET 2 AA5 6 THR B 102 ILE B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA5 6 THR B 85 LEU B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA5 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA5 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA5 6 THR B 53 LEU B 54 -1 O THR B 53 N TYR B 49 SHEET 1 AA6 5 ASN E 354 ILE E 358 0 SHEET 2 AA6 5 ASN E 394 ARG E 403 -1 O VAL E 395 N ILE E 358 SHEET 3 AA6 5 PRO E 507 GLU E 516 -1 O VAL E 512 N ASP E 398 SHEET 4 AA6 5 GLY E 431 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AA6 5 THR E 376 TYR E 380 -1 N LYS E 378 O VAL E 433 SHEET 1 AA7 2 LEU E 452 ARG E 454 0 SHEET 2 AA7 2 LEU E 492 SER E 494 -1 O GLN E 493 N TYR E 453 SHEET 1 AA8 2 TYR E 473 GLN E 474 0 SHEET 2 AA8 2 CYS E 488 TYR E 489 -1 O TYR E 489 N TYR E 473 SHEET 1 AA9 4 GLN C 3 SER C 7 0 SHEET 2 AA9 4 LEU C 18 SER C 25 -1 O SER C 25 N GLN C 3 SHEET 3 AA9 4 THR C 77 MET C 82 -1 O MET C 82 N LEU C 18 SHEET 4 AA9 4 PHE C 67 ASP C 72 -1 N THR C 68 O GLN C 81 SHEET 1 AB1 6 GLY C 10 VAL C 12 0 SHEET 2 AB1 6 THR C 111 VAL C 115 1 O THR C 114 N VAL C 12 SHEET 3 AB1 6 ALA C 91 ASP C 98 -1 N ALA C 91 O VAL C 113 SHEET 4 AB1 6 TYR C 33 GLN C 39 -1 N VAL C 37 O TYR C 94 SHEET 5 AB1 6 LEU C 45 ILE C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 AB1 6 THR C 57 TYR C 59 -1 O PHE C 58 N VAL C 50 SHEET 1 AB2 4 GLY C 10 VAL C 12 0 SHEET 2 AB2 4 THR C 111 VAL C 115 1 O THR C 114 N VAL C 12 SHEET 3 AB2 4 ALA C 91 ASP C 98 -1 N ALA C 91 O VAL C 113 SHEET 4 AB2 4 MET C 104 TRP C 107 -1 O VAL C 106 N ARG C 97 SHEET 1 AB3 4 LEU D 4 PHE D 7 0 SHEET 2 AB3 4 VAL D 19 ALA D 25 -1 O ARG D 24 N THR D 5 SHEET 3 AB3 4 GLU D 70 ILE D 75 -1 O PHE D 71 N CYS D 23 SHEET 4 AB3 4 PHE D 62 SER D 67 -1 N SER D 63 O THR D 74 SHEET 1 AB4 6 SER D 10 ALA D 13 0 SHEET 2 AB4 6 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 AB4 6 ALA D 84 LEU D 90 -1 N ALA D 84 O LEU D 104 SHEET 4 AB4 6 LEU D 33 GLN D 38 -1 N TYR D 36 O TYR D 87 SHEET 5 AB4 6 LYS D 45 TYR D 49 -1 O LEU D 47 N TRP D 35 SHEET 6 AB4 6 THR D 53 LEU D 54 -1 O THR D 53 N TYR D 49 SHEET 1 AB5 5 ASN F 354 ILE F 358 0 SHEET 2 AB5 5 ASN F 394 ARG F 403 -1 O VAL F 395 N ILE F 358 SHEET 3 AB5 5 PRO F 507 GLU F 516 -1 O VAL F 512 N ASP F 398 SHEET 4 AB5 5 GLY F 431 ASN F 437 -1 N CYS F 432 O LEU F 513 SHEET 5 AB5 5 THR F 376 TYR F 380 -1 N LYS F 378 O VAL F 433 SHEET 1 AB6 3 CYS F 361 VAL F 362 0 SHEET 2 AB6 3 VAL F 524 CYS F 525 1 O CYS F 525 N CYS F 361 SHEET 3 AB6 3 CYS F 391 PHE F 392 -1 N PHE F 392 O VAL F 524 SHEET 1 AB7 2 LEU F 452 ARG F 454 0 SHEET 2 AB7 2 LEU F 492 SER F 494 -1 O GLN F 493 N TYR F 453 SHEET 1 AB8 2 TYR F 473 GLN F 474 0 SHEET 2 AB8 2 CYS F 488 TYR F 489 -1 O TYR F 489 N TYR F 473 SSBOND 1 CYS A 22 CYS A 95 1555 1555 2.05 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.10 SSBOND 3 CYS E 336 CYS E 361 1555 1555 2.04 SSBOND 4 CYS E 379 CYS E 432 1555 1555 2.06 SSBOND 5 CYS E 391 CYS E 525 1555 1555 2.04 SSBOND 6 CYS E 480 CYS E 488 1555 1555 2.07 SSBOND 7 CYS C 22 CYS C 95 1555 1555 2.06 SSBOND 8 CYS D 23 CYS D 88 1555 1555 2.12 SSBOND 9 CYS F 336 CYS F 361 1555 1555 2.04 SSBOND 10 CYS F 379 CYS F 432 1555 1555 2.06 SSBOND 11 CYS F 391 CYS F 525 1555 1555 2.04 SSBOND 12 CYS F 480 CYS F 488 1555 1555 2.10 CISPEP 1 PHE B 7 PRO B 8 0 -1.39 CISPEP 2 PHE D 7 PRO D 8 0 -10.36 CRYST1 98.680 105.730 209.760 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004767 0.00000