HEADER LYASE 07-DEC-22 8HN9 TITLE HUMAN SIRT3 RECOGNIZING CCNE2K348LA PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CCNE2 PEPTIDE; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA PHAGE ECSZW-2; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2419741; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA PHAGE ECSZW-2; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 2419741 KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,W.DING REVDAT 3 15-NOV-23 8HN9 1 LINK ATOM REVDAT 2 17-MAY-23 8HN9 1 JRNL REVDAT 1 10-MAY-23 8HN9 0 JRNL AUTH J.JIN,L.BAI,D.WANG,W.DING,Z.CAO,P.YAN,Y.LI,L.XI,Y.WANG, JRNL AUTH 2 X.ZHENG,H.WEI,C.DING,Y.WANG JRNL TITL SIRT3-DEPENDENT DELACTYLATION OF CYCLIN E2 PREVENTS JRNL TITL 2 HEPATOCELLULAR CARCINOMA GROWTH. JRNL REF EMBO REP. V. 24 56052 2023 JRNL REFN ESSN 1469-3178 JRNL PMID 36896611 JRNL DOI 10.15252/EMBR.202256052 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2300 - 7.6900 0.94 2528 154 0.2103 0.1645 REMARK 3 2 7.6800 - 6.1100 0.94 2472 143 0.2656 0.2985 REMARK 3 3 6.1000 - 5.3300 0.95 2456 142 0.2550 0.2462 REMARK 3 4 5.3300 - 4.8500 0.95 2447 131 0.2105 0.2295 REMARK 3 5 4.8500 - 4.5000 0.96 2472 104 0.2032 0.2081 REMARK 3 6 4.5000 - 4.2400 0.95 2453 137 0.1986 0.2066 REMARK 3 7 4.2300 - 4.0200 0.95 2425 130 0.2077 0.2902 REMARK 3 8 4.0200 - 3.8500 0.92 2346 124 0.3305 0.3566 REMARK 3 9 3.8500 - 3.7000 0.94 2443 131 0.2466 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4525 REMARK 3 ANGLE : 1.001 6155 REMARK 3 CHIRALITY : 0.062 699 REMARK 3 PLANARITY : 0.010 801 REMARK 3 DIHEDRAL : 17.240 1683 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 33.5357 49.1548 11.9943 REMARK 3 T TENSOR REMARK 3 T11: 0.3570 T22: 0.4626 REMARK 3 T33: 0.5133 T12: 0.0127 REMARK 3 T13: -0.0168 T23: 0.1816 REMARK 3 L TENSOR REMARK 3 L11: -0.0017 L22: 0.7865 REMARK 3 L33: 0.6765 L12: 0.1767 REMARK 3 L13: -0.2578 L23: 0.7313 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.2274 S13: 0.2960 REMARK 3 S21: -0.1340 S22: -0.0283 S23: -0.0496 REMARK 3 S31: -0.1973 S32: 0.0447 S33: 0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27432 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 85.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SUCCINIC ACID, PH 7.0, 0.01M REMARK 280 IMIDAZOLE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.83800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 117.83800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.83800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 117.83800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 117.83800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 117.83800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 117.83800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 117.83800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 117.83800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 117.83800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 117.83800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 117.83800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 117.83800 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 117.83800 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 117.83800 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 117.83800 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 117.83800 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 117.83800 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 117.83800 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 117.83800 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 117.83800 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 117.83800 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 117.83800 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 117.83800 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 117.83800 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 122 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 235 CZ REMARK 480 ARG B 235 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 D8R C 10 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 146 1.46 -67.86 REMARK 500 LEU A 314 139.05 -172.87 REMARK 500 PHE C 8 115.09 -161.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 280 SG REMARK 620 2 CYS A 283 SG 130.9 REMARK 620 N 1 DBREF 8HN9 A 122 395 UNP Q9NTG7 SIR3_HUMAN 122 395 DBREF 8HN9 B 122 395 UNP Q9NTG7 SIR3_HUMAN 122 395 DBREF 8HN9 C 1 13 PDB 8HN9 8HN9 1 13 SEQRES 1 A 274 LYS LEU SER LEU GLN ASP VAL ALA GLU LEU ILE ARG ALA SEQRES 2 A 274 ARG ALA CYS GLN ARG VAL VAL VAL MET VAL GLY ALA GLY SEQRES 3 A 274 ILE SER THR PRO SER GLY ILE PRO ASP PHE ARG SER PRO SEQRES 4 A 274 GLY SER GLY LEU TYR SER ASN LEU GLN GLN TYR ASP LEU SEQRES 5 A 274 PRO TYR PRO GLU ALA ILE PHE GLU LEU PRO PHE PHE PHE SEQRES 6 A 274 HIS ASN PRO LYS PRO PHE PHE THR LEU ALA LYS GLU LEU SEQRES 7 A 274 TYR PRO GLY ASN TYR LYS PRO ASN VAL THR HIS TYR PHE SEQRES 8 A 274 LEU ARG LEU LEU HIS ASP LYS GLY LEU LEU LEU ARG LEU SEQRES 9 A 274 TYR THR GLN ASN ILE ASP GLY LEU GLU ARG VAL SER GLY SEQRES 10 A 274 ILE PRO ALA SER LYS LEU VAL GLU ALA HIS GLY THR PHE SEQRES 11 A 274 ALA SER ALA THR CYS THR VAL CYS GLN ARG PRO PHE PRO SEQRES 12 A 274 GLY GLU ASP ILE ARG ALA ASP VAL MET ALA ASP ARG VAL SEQRES 13 A 274 PRO ARG CYS PRO VAL CYS THR GLY VAL VAL LYS PRO ASP SEQRES 14 A 274 ILE VAL PHE PHE GLY GLU PRO LEU PRO GLN ARG PHE LEU SEQRES 15 A 274 LEU HIS VAL VAL ASP PHE PRO MET ALA ASP LEU LEU LEU SEQRES 16 A 274 ILE LEU GLY THR SER LEU GLU VAL GLU PRO PHE ALA SER SEQRES 17 A 274 LEU THR GLU ALA VAL ARG SER SER VAL PRO ARG LEU LEU SEQRES 18 A 274 ILE ASN ARG ASP LEU VAL GLY PRO LEU ALA TRP HIS PRO SEQRES 19 A 274 ARG SER ARG ASP VAL ALA GLN LEU GLY ASP VAL VAL HIS SEQRES 20 A 274 GLY VAL GLU SER LEU VAL GLU LEU LEU GLY TRP THR GLU SEQRES 21 A 274 GLU MET ARG ASP LEU VAL GLN ARG GLU THR GLY LYS LEU SEQRES 22 A 274 ASP SEQRES 1 B 274 LYS LEU SER LEU GLN ASP VAL ALA GLU LEU ILE ARG ALA SEQRES 2 B 274 ARG ALA CYS GLN ARG VAL VAL VAL MET VAL GLY ALA GLY SEQRES 3 B 274 ILE SER THR PRO SER GLY ILE PRO ASP PHE ARG SER PRO SEQRES 4 B 274 GLY SER GLY LEU TYR SER ASN LEU GLN GLN TYR ASP LEU SEQRES 5 B 274 PRO TYR PRO GLU ALA ILE PHE GLU LEU PRO PHE PHE PHE SEQRES 6 B 274 HIS ASN PRO LYS PRO PHE PHE THR LEU ALA LYS GLU LEU SEQRES 7 B 274 TYR PRO GLY ASN TYR LYS PRO ASN VAL THR HIS TYR PHE SEQRES 8 B 274 LEU ARG LEU LEU HIS ASP LYS GLY LEU LEU LEU ARG LEU SEQRES 9 B 274 TYR THR GLN ASN ILE ASP GLY LEU GLU ARG VAL SER GLY SEQRES 10 B 274 ILE PRO ALA SER LYS LEU VAL GLU ALA HIS GLY THR PHE SEQRES 11 B 274 ALA SER ALA THR CYS THR VAL CYS GLN ARG PRO PHE PRO SEQRES 12 B 274 GLY GLU ASP ILE ARG ALA ASP VAL MET ALA ASP ARG VAL SEQRES 13 B 274 PRO ARG CYS PRO VAL CYS THR GLY VAL VAL LYS PRO ASP SEQRES 14 B 274 ILE VAL PHE PHE GLY GLU PRO LEU PRO GLN ARG PHE LEU SEQRES 15 B 274 LEU HIS VAL VAL ASP PHE PRO MET ALA ASP LEU LEU LEU SEQRES 16 B 274 ILE LEU GLY THR SER LEU GLU VAL GLU PRO PHE ALA SER SEQRES 17 B 274 LEU THR GLU ALA VAL ARG SER SER VAL PRO ARG LEU LEU SEQRES 18 B 274 ILE ASN ARG ASP LEU VAL GLY PRO LEU ALA TRP HIS PRO SEQRES 19 B 274 ARG SER ARG ASP VAL ALA GLN LEU GLY ASP VAL VAL HIS SEQRES 20 B 274 GLY VAL GLU SER LEU VAL GLU LEU LEU GLY TRP THR GLU SEQRES 21 B 274 GLU MET ARG ASP LEU VAL GLN ARG GLU THR GLY LYS LEU SEQRES 22 B 274 ASP SEQRES 1 C 13 SER PRO VAL LYS LEU LYS THR PHE LYS D8R ILE PRO MET HET D8R C 10 14 HET ZN A 401 1 HET ZN B 401 1 HET IMD C 201 5 HET IMD C 202 5 HETNAM D8R (2~{S})-2-AZANYL-6-[[(2~{R})-2- HETNAM 2 D8R OXIDANYLPROPANOYL]AMINO]HEXANOIC ACID HETNAM ZN ZINC ION HETNAM IMD IMIDAZOLE FORMUL 3 D8R C9 H18 N2 O4 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 IMD 2(C3 H5 N2 1+) HELIX 1 AA1 SER A 124 ALA A 134 1 11 HELIX 2 AA2 SER A 149 GLY A 153 5 5 HELIX 3 AA3 GLY A 163 TYR A 171 1 9 HELIX 4 AA4 TYR A 175 PHE A 180 5 6 HELIX 5 AA5 GLU A 181 ASN A 188 1 8 HELIX 6 AA6 PRO A 189 TYR A 200 1 12 HELIX 7 AA7 ASN A 207 LYS A 219 1 13 HELIX 8 AA8 GLY A 232 SER A 237 1 6 HELIX 9 AA9 ILE A 268 ALA A 274 1 7 HELIX 10 AB1 PRO A 299 LEU A 303 5 5 HELIX 11 AB2 LEU A 304 ALA A 312 1 9 HELIX 12 AB3 VAL A 324 SER A 329 1 6 HELIX 13 AB4 LEU A 330 ALA A 333 5 4 HELIX 14 AB5 VAL A 348 HIS A 354 1 7 HELIX 15 AB6 ASP A 365 GLY A 378 1 14 HELIX 16 AB7 TRP A 379 ASP A 395 1 17 HELIX 17 AB8 SER B 124 ALA B 134 1 11 HELIX 18 AB9 ALA B 146 GLY B 153 5 8 HELIX 19 AC1 SER B 162 GLN B 170 1 9 HELIX 20 AC2 TYR B 175 PHE B 180 5 6 HELIX 21 AC3 GLU B 181 ASN B 188 1 8 HELIX 22 AC4 PRO B 189 TYR B 200 1 12 HELIX 23 AC5 ASN B 207 LYS B 219 1 13 HELIX 24 AC6 GLY B 232 SER B 237 1 6 HELIX 25 AC7 ILE B 268 ALA B 274 1 7 HELIX 26 AC8 PRO B 299 LEU B 303 5 5 HELIX 27 AC9 LEU B 304 ALA B 312 1 9 HELIX 28 AD1 PHE B 327 ALA B 333 5 7 HELIX 29 AD2 GLY B 349 HIS B 354 1 6 HELIX 30 AD3 ASP B 365 GLY B 378 1 14 HELIX 31 AD4 TRP B 379 ASP B 395 1 17 SHEET 1 AA1 6 LEU A 244 GLU A 246 0 SHEET 2 AA1 6 LEU A 222 THR A 227 1 N LEU A 225 O VAL A 245 SHEET 3 AA1 6 VAL A 140 VAL A 144 1 N VAL A 140 O LEU A 223 SHEET 4 AA1 6 LEU A 314 LEU A 318 1 O LEU A 316 N MET A 143 SHEET 5 AA1 6 ARG A 340 LEU A 342 1 O LEU A 341 N LEU A 315 SHEET 6 AA1 6 ASP A 359 ALA A 361 1 O VAL A 360 N LEU A 342 SHEET 1 AA2 3 PRO A 262 PRO A 264 0 SHEET 2 AA2 3 GLY A 249 CYS A 256 -1 N ALA A 254 O PHE A 263 SHEET 3 AA2 3 VAL A 287 ILE A 291 -1 O ASP A 290 N THR A 250 SHEET 1 AA3 6 LEU B 244 GLU B 246 0 SHEET 2 AA3 6 LEU B 222 THR B 227 1 N LEU B 225 O VAL B 245 SHEET 3 AA3 6 VAL B 140 VAL B 144 1 N VAL B 140 O LEU B 223 SHEET 4 AA3 6 LEU B 314 LEU B 318 1 O LEU B 316 N MET B 143 SHEET 5 AA3 6 ARG B 340 LEU B 342 1 O LEU B 341 N ILE B 317 SHEET 6 AA3 6 VAL B 360 ALA B 361 1 O VAL B 360 N LEU B 342 SHEET 1 AA4 3 PRO B 262 PRO B 264 0 SHEET 2 AA4 3 GLY B 249 CYS B 256 -1 N ALA B 254 O PHE B 263 SHEET 3 AA4 3 VAL B 287 ILE B 291 -1 O ASP B 290 N THR B 250 LINK C LYS C 9 N D8R C 10 1555 1555 1.33 LINK C D8R C 10 N ILE C 11 1555 1555 1.36 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.47 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.55 LINK SG CYS B 280 ZN ZN B 401 1555 1555 2.85 CISPEP 1 GLU B 325 PRO B 326 0 25.80 CRYST1 235.676 235.676 235.676 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004243 0.00000