HEADER OXIDOREDUCTASE 11-DEC-22 8HP0 TITLE CRYSTAL STRUCTURE OF MESO-DIAMINOPIMELATE DEHYDROGENASE FROM TITLE 2 PREVOTELLA TIMONENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MESO-DIAMINOPIMELATE D-DEHYDROGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DAPDH,MESO-DAP DEHYDROGENASE; COMPND 5 EC: 1.4.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PREVOTELLA TIMONENSIS; SOURCE 3 ORGANISM_TAXID: 386414; SOURCE 4 GENE: BFS16_11360; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASYMMETRIC UNIT, C221, FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.TAN,W.SONG REVDAT 2 21-FEB-24 8HP0 1 JRNL REVDAT 1 13-DEC-23 8HP0 0 JRNL AUTH Y.TAN,C.GAO,W.SONG,W.WEI,J.LIU,C.GAO,L.GUO,X.CHEN,L.LIU,J.WU JRNL TITL RATIONAL DESIGN OF MESO -DIAMINOPIMELATE DEHYDROGENASE WITH JRNL TITL 2 ENHANCED REDUCTIVE AMINATION ACTIVITY FOR EFFICIENT JRNL TITL 3 PRODUCTION OF D- P -HYDROXYPHENYLGLYCINE. JRNL REF APPL.ENVIRON.MICROBIOL. V. 89 10923 2023 JRNL REFN ESSN 1098-5336 JRNL PMID 37070978 JRNL DOI 10.1128/AEM.00109-23 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2421 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.18000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : 2.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.638 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.393 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7026 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6794 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9513 ; 1.271 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15708 ; 1.118 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 899 ; 7.188 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 324 ;32.663 ;22.809 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1243 ;14.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.929 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 925 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7817 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1421 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3581 ; 1.971 ; 4.335 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3580 ; 1.971 ; 4.335 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4473 ; 3.199 ; 6.498 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4474 ; 3.199 ; 6.498 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3445 ; 2.009 ; 4.592 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3411 ; 1.992 ; 4.566 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4989 ; 3.383 ; 6.743 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7178 ; 5.292 ;50.321 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7159 ; 5.244 ;50.316 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 9073 0.06 0.05 REMARK 3 2 A C 9035 0.06 0.05 REMARK 3 3 B C 9030 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8HP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 44.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, AND 0.1 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.57500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.57500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 95.23500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 95.23500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.57500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.87500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 95.23500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.57500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.87500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 95.23500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.75000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.57500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 125 O HOH A 401 1.98 REMARK 500 OE2 GLU A 246 O HOH A 402 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 41 55.98 -111.08 REMARK 500 ALA A 67 46.81 -84.90 REMARK 500 ALA A 119 59.36 -109.94 REMARK 500 GLU A 189 122.15 -36.37 REMARK 500 ASN A 242 32.60 70.88 REMARK 500 ALA B 67 47.11 -86.01 REMARK 500 ALA B 119 59.31 -109.57 REMARK 500 ASN B 242 33.42 71.06 REMARK 500 TYR C 11 41.94 -140.16 REMARK 500 ASN C 41 53.20 -111.53 REMARK 500 ALA C 67 47.96 -85.97 REMARK 500 ALA C 119 59.64 -109.61 REMARK 500 ASN C 242 33.25 71.19 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8HP0 A 1 299 UNP A0A2K0XCZ3_9BACT DBREF2 8HP0 A A0A2K0XCZ3 1 299 DBREF1 8HP0 B 1 299 UNP A0A2K0XCZ3_9BACT DBREF2 8HP0 B A0A2K0XCZ3 1 299 DBREF1 8HP0 C 1 299 UNP A0A2K0XCZ3_9BACT DBREF2 8HP0 C A0A2K0XCZ3 1 299 SEQRES 1 A 299 MET LYS LYS ILE ARG ALA ALA ILE VAL GLY TYR GLY ASN SEQRES 2 A 299 ILE GLY LYS PHE THR VAL GLU ALA VAL GLU ALA ALA GLU SEQRES 3 A 299 ASP PHE GLU LEU VAL GLY ILE VAL ARG ARG GLN GLY ALA SEQRES 4 A 299 GLU ASN LYS PRO ALA GLU LEU ALA PRO TYR LYS VAL VAL SEQRES 5 A 299 GLN ASP ILE LYS GLU LEU GLU GLY VAL ASP VAL ALA ILE SEQRES 6 A 299 LEU ALA THR PRO SER ARG SER CYS LYS GLU TYR ALA GLU SEQRES 7 A 299 LYS ILE LEU PRO LEU GLY ILE ASN THR VAL ASP SER PHE SEQRES 8 A 299 ASP ILE HIS THR ASP ILE VAL ASP TYR ARG SER ALA LEU SEQRES 9 A 299 MET PRO LEU CYS LYS GLU HIS HIS ALA VAL SER ILE ILE SEQRES 10 A 299 SER ALA GLY TRP ASP PRO GLY SER ASP SER VAL VAL ARG SEQRES 11 A 299 THR LEU MET GLN SER LEU ALA PRO LYS GLY LEU SER TYR SEQRES 12 A 299 THR ASN PHE GLY PRO GLY MET SER MET GLY HIS SER VAL SEQRES 13 A 299 CYS ALA ARG SER LYS LYS GLY VAL LYS ASN ALA LEU SER SEQRES 14 A 299 MET THR ILE PRO LEU GLY GLU GLY ILE HIS ARG ARG MET SEQRES 15 A 299 VAL TYR VAL GLU LEU GLU GLU GLY ALA THR LEU ASP GLU SEQRES 16 A 299 VAL THR LYS GLU ILE LYS ALA ASP PRO TYR PHE ALA HIS SEQRES 17 A 299 ASP GLU THR HIS VAL MET ALA VAL ASP SER VAL ASP ALA SEQRES 18 A 299 VAL LYS ASP MET GLY HIS GLY VAL HIS LEU VAL ARG LYS SEQRES 19 A 299 GLY VAL SER GLY LYS THR GLN ASN GLN ARG MET GLU PHE SEQRES 20 A 299 SER MET SER ILE ASN ASN PRO ALA LEU THR ALA GLN VAL SEQRES 21 A 299 LEU VAL ASN VAL ALA ARG ALA SER MET HIS GLN GLN PRO SEQRES 22 A 299 GLY CYS TYR THR MET VAL GLU ILE PRO VAL ILE ASP LEU SEQRES 23 A 299 LEU ALA GLY GLU ARG GLU ASP LEU ILE LYS ALA LEU VAL SEQRES 1 B 299 MET LYS LYS ILE ARG ALA ALA ILE VAL GLY TYR GLY ASN SEQRES 2 B 299 ILE GLY LYS PHE THR VAL GLU ALA VAL GLU ALA ALA GLU SEQRES 3 B 299 ASP PHE GLU LEU VAL GLY ILE VAL ARG ARG GLN GLY ALA SEQRES 4 B 299 GLU ASN LYS PRO ALA GLU LEU ALA PRO TYR LYS VAL VAL SEQRES 5 B 299 GLN ASP ILE LYS GLU LEU GLU GLY VAL ASP VAL ALA ILE SEQRES 6 B 299 LEU ALA THR PRO SER ARG SER CYS LYS GLU TYR ALA GLU SEQRES 7 B 299 LYS ILE LEU PRO LEU GLY ILE ASN THR VAL ASP SER PHE SEQRES 8 B 299 ASP ILE HIS THR ASP ILE VAL ASP TYR ARG SER ALA LEU SEQRES 9 B 299 MET PRO LEU CYS LYS GLU HIS HIS ALA VAL SER ILE ILE SEQRES 10 B 299 SER ALA GLY TRP ASP PRO GLY SER ASP SER VAL VAL ARG SEQRES 11 B 299 THR LEU MET GLN SER LEU ALA PRO LYS GLY LEU SER TYR SEQRES 12 B 299 THR ASN PHE GLY PRO GLY MET SER MET GLY HIS SER VAL SEQRES 13 B 299 CYS ALA ARG SER LYS LYS GLY VAL LYS ASN ALA LEU SER SEQRES 14 B 299 MET THR ILE PRO LEU GLY GLU GLY ILE HIS ARG ARG MET SEQRES 15 B 299 VAL TYR VAL GLU LEU GLU GLU GLY ALA THR LEU ASP GLU SEQRES 16 B 299 VAL THR LYS GLU ILE LYS ALA ASP PRO TYR PHE ALA HIS SEQRES 17 B 299 ASP GLU THR HIS VAL MET ALA VAL ASP SER VAL ASP ALA SEQRES 18 B 299 VAL LYS ASP MET GLY HIS GLY VAL HIS LEU VAL ARG LYS SEQRES 19 B 299 GLY VAL SER GLY LYS THR GLN ASN GLN ARG MET GLU PHE SEQRES 20 B 299 SER MET SER ILE ASN ASN PRO ALA LEU THR ALA GLN VAL SEQRES 21 B 299 LEU VAL ASN VAL ALA ARG ALA SER MET HIS GLN GLN PRO SEQRES 22 B 299 GLY CYS TYR THR MET VAL GLU ILE PRO VAL ILE ASP LEU SEQRES 23 B 299 LEU ALA GLY GLU ARG GLU ASP LEU ILE LYS ALA LEU VAL SEQRES 1 C 299 MET LYS LYS ILE ARG ALA ALA ILE VAL GLY TYR GLY ASN SEQRES 2 C 299 ILE GLY LYS PHE THR VAL GLU ALA VAL GLU ALA ALA GLU SEQRES 3 C 299 ASP PHE GLU LEU VAL GLY ILE VAL ARG ARG GLN GLY ALA SEQRES 4 C 299 GLU ASN LYS PRO ALA GLU LEU ALA PRO TYR LYS VAL VAL SEQRES 5 C 299 GLN ASP ILE LYS GLU LEU GLU GLY VAL ASP VAL ALA ILE SEQRES 6 C 299 LEU ALA THR PRO SER ARG SER CYS LYS GLU TYR ALA GLU SEQRES 7 C 299 LYS ILE LEU PRO LEU GLY ILE ASN THR VAL ASP SER PHE SEQRES 8 C 299 ASP ILE HIS THR ASP ILE VAL ASP TYR ARG SER ALA LEU SEQRES 9 C 299 MET PRO LEU CYS LYS GLU HIS HIS ALA VAL SER ILE ILE SEQRES 10 C 299 SER ALA GLY TRP ASP PRO GLY SER ASP SER VAL VAL ARG SEQRES 11 C 299 THR LEU MET GLN SER LEU ALA PRO LYS GLY LEU SER TYR SEQRES 12 C 299 THR ASN PHE GLY PRO GLY MET SER MET GLY HIS SER VAL SEQRES 13 C 299 CYS ALA ARG SER LYS LYS GLY VAL LYS ASN ALA LEU SER SEQRES 14 C 299 MET THR ILE PRO LEU GLY GLU GLY ILE HIS ARG ARG MET SEQRES 15 C 299 VAL TYR VAL GLU LEU GLU GLU GLY ALA THR LEU ASP GLU SEQRES 16 C 299 VAL THR LYS GLU ILE LYS ALA ASP PRO TYR PHE ALA HIS SEQRES 17 C 299 ASP GLU THR HIS VAL MET ALA VAL ASP SER VAL ASP ALA SEQRES 18 C 299 VAL LYS ASP MET GLY HIS GLY VAL HIS LEU VAL ARG LYS SEQRES 19 C 299 GLY VAL SER GLY LYS THR GLN ASN GLN ARG MET GLU PHE SEQRES 20 C 299 SER MET SER ILE ASN ASN PRO ALA LEU THR ALA GLN VAL SEQRES 21 C 299 LEU VAL ASN VAL ALA ARG ALA SER MET HIS GLN GLN PRO SEQRES 22 C 299 GLY CYS TYR THR MET VAL GLU ILE PRO VAL ILE ASP LEU SEQRES 23 C 299 LEU ALA GLY GLU ARG GLU ASP LEU ILE LYS ALA LEU VAL HET EPE A 301 15 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET EPE B 301 15 HET SO4 B 302 5 HET SO4 B 303 5 HET EPE C 301 15 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 C 304 5 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETSYN EPE HEPES FORMUL 4 EPE 3(C8 H18 N2 O4 S) FORMUL 5 SO4 8(O4 S 2-) FORMUL 15 HOH *162(H2 O) HELIX 1 AA1 GLY A 12 ALA A 25 1 14 HELIX 2 AA2 PRO A 43 ALA A 47 5 5 HELIX 3 AA3 ASP A 54 LEU A 58 5 5 HELIX 4 AA4 PRO A 69 ARG A 71 5 3 HELIX 5 AA5 SER A 72 LEU A 81 1 10 HELIX 6 AA6 PRO A 82 GLY A 84 5 3 HELIX 7 AA7 ILE A 93 THR A 95 5 3 HELIX 8 AA8 ASP A 96 HIS A 111 1 16 HELIX 9 AA9 GLY A 124 ALA A 137 1 14 HELIX 10 AB1 SER A 151 SER A 160 1 10 HELIX 11 AB2 THR A 192 ASP A 203 1 12 HELIX 12 AB3 ASP A 203 HIS A 208 1 6 HELIX 13 AB4 VAL A 219 LYS A 223 5 5 HELIX 14 AB5 ASN A 253 MET A 269 1 17 HELIX 15 AB6 THR A 277 ILE A 281 5 5 HELIX 16 AB7 PRO A 282 LEU A 287 5 6 HELIX 17 AB8 GLU A 290 VAL A 299 1 10 HELIX 18 AB9 GLY B 12 ALA B 25 1 14 HELIX 19 AC1 PRO B 43 ALA B 47 5 5 HELIX 20 AC2 ASP B 54 LEU B 58 5 5 HELIX 21 AC3 PRO B 69 ARG B 71 5 3 HELIX 22 AC4 SER B 72 LEU B 81 1 10 HELIX 23 AC5 PRO B 82 GLY B 84 5 3 HELIX 24 AC6 ILE B 93 THR B 95 5 3 HELIX 25 AC7 ASP B 96 HIS B 111 1 16 HELIX 26 AC8 GLY B 124 ALA B 137 1 14 HELIX 27 AC9 SER B 151 SER B 160 1 10 HELIX 28 AD1 THR B 192 ASP B 203 1 12 HELIX 29 AD2 ASP B 203 HIS B 208 1 6 HELIX 30 AD3 VAL B 219 LYS B 223 5 5 HELIX 31 AD4 ASN B 253 MET B 269 1 17 HELIX 32 AD5 THR B 277 ILE B 281 5 5 HELIX 33 AD6 PRO B 282 LEU B 287 5 6 HELIX 34 AD7 GLU B 290 VAL B 299 1 10 HELIX 35 AD8 GLY C 12 ALA C 25 1 14 HELIX 36 AD9 PRO C 43 ALA C 47 5 5 HELIX 37 AE1 ASP C 54 LEU C 58 5 5 HELIX 38 AE2 PRO C 69 ARG C 71 5 3 HELIX 39 AE3 SER C 72 LEU C 81 1 10 HELIX 40 AE4 PRO C 82 GLY C 84 5 3 HELIX 41 AE5 ILE C 93 THR C 95 5 3 HELIX 42 AE6 ASP C 96 HIS C 111 1 16 HELIX 43 AE7 GLY C 124 ALA C 137 1 14 HELIX 44 AE8 SER C 151 SER C 160 1 10 HELIX 45 AE9 THR C 192 ASP C 203 1 12 HELIX 46 AF1 ASP C 203 HIS C 208 1 6 HELIX 47 AF2 VAL C 219 LYS C 223 5 5 HELIX 48 AF3 ASN C 253 MET C 269 1 17 HELIX 49 AF4 THR C 277 ILE C 281 5 5 HELIX 50 AF5 PRO C 282 LEU C 287 5 6 HELIX 51 AF6 GLU C 290 VAL C 299 1 10 SHEET 1 AA1 7 LYS A 50 VAL A 52 0 SHEET 2 AA1 7 PHE A 28 VAL A 34 1 N ILE A 33 O VAL A 52 SHEET 3 AA1 7 ILE A 4 VAL A 9 1 N ILE A 8 O VAL A 34 SHEET 4 AA1 7 VAL A 63 LEU A 66 1 O ILE A 65 N ALA A 7 SHEET 5 AA1 7 ASN A 86 ASP A 89 1 O ASN A 86 N ALA A 64 SHEET 6 AA1 7 VAL A 114 ILE A 116 1 O ILE A 116 N THR A 87 SHEET 7 AA1 7 GLY A 274 TYR A 276 1 O TYR A 276 N SER A 115 SHEET 1 AA2 6 LYS A 139 PHE A 146 0 SHEET 2 AA2 6 GLY A 226 SER A 237 -1 O VAL A 236 N LYS A 139 SHEET 3 AA2 6 THR A 240 ASN A 252 -1 O PHE A 247 N LEU A 231 SHEET 4 AA2 6 THR B 240 ASN B 252 -1 O SER B 248 N GLU A 246 SHEET 5 AA2 6 GLY B 226 SER B 237 -1 N LEU B 231 O PHE B 247 SHEET 6 AA2 6 LYS B 139 PHE B 146 -1 N LYS B 139 O VAL B 236 SHEET 1 AA3 4 GLY A 149 MET A 150 0 SHEET 2 AA3 4 VAL A 164 PRO A 173 -1 O THR A 171 N GLY A 149 SHEET 3 AA3 4 HIS A 179 LEU A 187 -1 O TYR A 184 N LEU A 168 SHEET 4 AA3 4 GLU A 210 ALA A 215 1 O HIS A 212 N VAL A 183 SHEET 1 AA4 7 LYS B 50 VAL B 52 0 SHEET 2 AA4 7 PHE B 28 VAL B 34 1 N ILE B 33 O VAL B 52 SHEET 3 AA4 7 ILE B 4 VAL B 9 1 N ILE B 8 O VAL B 34 SHEET 4 AA4 7 VAL B 63 LEU B 66 1 O ILE B 65 N ALA B 7 SHEET 5 AA4 7 ASN B 86 ASP B 89 1 O ASN B 86 N ALA B 64 SHEET 6 AA4 7 VAL B 114 ILE B 116 1 O ILE B 116 N THR B 87 SHEET 7 AA4 7 GLY B 274 TYR B 276 1 O TYR B 276 N SER B 115 SHEET 1 AA5 4 GLY B 149 MET B 150 0 SHEET 2 AA5 4 VAL B 164 PRO B 173 -1 O THR B 171 N GLY B 149 SHEET 3 AA5 4 HIS B 179 LEU B 187 -1 O TYR B 184 N LEU B 168 SHEET 4 AA5 4 GLU B 210 ALA B 215 1 O HIS B 212 N VAL B 183 SHEET 1 AA6 7 LYS C 50 VAL C 52 0 SHEET 2 AA6 7 PHE C 28 VAL C 34 1 N ILE C 33 O VAL C 52 SHEET 3 AA6 7 ILE C 4 VAL C 9 1 N ILE C 8 O VAL C 34 SHEET 4 AA6 7 VAL C 63 LEU C 66 1 O ILE C 65 N ALA C 7 SHEET 5 AA6 7 ASN C 86 ASP C 89 1 O ASN C 86 N ALA C 64 SHEET 6 AA6 7 VAL C 114 ILE C 116 1 O ILE C 116 N THR C 87 SHEET 7 AA6 7 GLY C 274 TYR C 276 1 O TYR C 276 N SER C 115 SHEET 1 AA7 3 LYS C 139 PHE C 146 0 SHEET 2 AA7 3 GLY C 226 SER C 237 -1 O VAL C 236 N LYS C 139 SHEET 3 AA7 3 THR C 240 ASN C 252 -1 O PHE C 247 N LEU C 231 SHEET 1 AA8 4 GLY C 149 MET C 150 0 SHEET 2 AA8 4 VAL C 164 PRO C 173 -1 O THR C 171 N GLY C 149 SHEET 3 AA8 4 HIS C 179 LEU C 187 -1 O TYR C 184 N LEU C 168 SHEET 4 AA8 4 GLU C 210 ALA C 215 1 O HIS C 212 N VAL C 183 CISPEP 1 ASP A 122 PRO A 123 0 0.26 CISPEP 2 GLY A 147 PRO A 148 0 0.28 CISPEP 3 ASP B 122 PRO B 123 0 0.65 CISPEP 4 GLY B 147 PRO B 148 0 0.26 CISPEP 5 ASP C 122 PRO C 123 0 1.89 CISPEP 6 GLY C 147 PRO C 148 0 1.21 CRYST1 101.750 190.470 101.150 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009828 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005250 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009886 0.00000