HEADER TRANSCRIPTION 12-DEC-22 8HPP TITLE CRYSTAL STRUCTURE OF HUMAN INTS3 WITH SAGE1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRATOR COMPLEX SUBUNIT 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL MOTIF; COMPND 5 SYNONYM: INT3,SOSS COMPLEX SUBUNIT A,SENSOR OF SINGLE-STRAND DNA COMPND 6 COMPLEX SUBUNIT A,SOSS-A,SENSOR OF SSDNA SUBUNIT A; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SARCOMA ANTIGEN 1; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: CANCER/TESTIS ANTIGEN 14,CT14; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INTS3, C1ORF193, C1ORF60; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: SAGE1, SAGE; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS INTEGRATOR, CANCER-TESTIS ANTIGEN, TUMORIGENESIS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.DENG,J.WU,M.LEI REVDAT 1 20-DEC-23 8HPP 0 JRNL AUTH W.DENG,J.WU,M.LEI JRNL TITL CANCER-TESTIS ANTIGEN SAGE1 IS A PAN-CANCER MASTER REGULATOR JRNL TITL 2 OF RNA POLYMERASE II JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 21484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7102 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.95000 REMARK 3 B22 (A**2) : -7.76000 REMARK 3 B33 (A**2) : 9.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.455 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.390 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7224 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9741 ; 0.975 ; 1.625 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 870 ; 6.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 383 ;39.848 ;24.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1407 ;19.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.917 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 930 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5343 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 8HPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300034088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22718 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE AND 25% REMARK 280 ETHYLENE GLYCOL 3350, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 130.05950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.12050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 130.05950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.12050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 902 REMARK 465 ARG A 903 REMARK 465 LYS A 904 REMARK 465 ARG A 905 REMARK 465 GLN A 906 REMARK 465 SER A 907 REMARK 465 LEU A 908 REMARK 465 ARG A 909 REMARK 465 SER A 910 REMARK 465 SER A 911 REMARK 465 GLU A 977 REMARK 465 ASP A 978 REMARK 465 SER A 979 REMARK 465 SER A 980 REMARK 465 THR A 981 REMARK 465 LYS A 982 REMARK 465 PRO A 983 REMARK 465 PRO A 984 REMARK 465 LYS A 985 REMARK 465 SER A 986 REMARK 465 ARG A 987 REMARK 465 ARG A 988 REMARK 465 LYS A 989 REMARK 465 ALA A 990 REMARK 465 ALA A 991 REMARK 465 LEU A 992 REMARK 465 SER A 993 REMARK 465 SER A 994 REMARK 465 PRO A 995 REMARK 465 ARG A 996 REMARK 465 SER A 997 REMARK 465 ARG A 998 REMARK 465 LYS A 999 REMARK 465 ASN A 1000 REMARK 465 ALA A 1001 REMARK 465 THR A 1002 REMARK 465 GLN A 1003 REMARK 465 PRO A 1004 REMARK 465 PRO A 1005 REMARK 465 ASN A 1006 REMARK 465 ALA A 1007 REMARK 465 GLU A 1008 REMARK 465 GLU A 1009 REMARK 465 GLU A 1010 REMARK 465 SER A 1011 REMARK 465 GLY A 1012 REMARK 465 SER A 1013 REMARK 465 SER A 1014 REMARK 465 SER A 1015 REMARK 465 ALA A 1016 REMARK 465 SER A 1017 REMARK 465 GLU A 1018 REMARK 465 GLU A 1019 REMARK 465 GLU A 1020 REMARK 465 ASP A 1021 REMARK 465 THR A 1022 REMARK 465 LYS A 1023 REMARK 465 PRO A 1024 REMARK 465 LYS A 1025 REMARK 465 PRO A 1026 REMARK 465 THR A 1027 REMARK 465 LYS A 1028 REMARK 465 ARG A 1029 REMARK 465 LYS A 1030 REMARK 465 ARG A 1031 REMARK 465 LYS A 1032 REMARK 465 GLY A 1033 REMARK 465 SER A 1034 REMARK 465 SER A 1035 REMARK 465 ALA A 1036 REMARK 465 VAL A 1037 REMARK 465 GLY A 1038 REMARK 465 SER A 1039 REMARK 465 ASP A 1040 REMARK 465 SER A 1041 REMARK 465 ASP A 1042 REMARK 465 PRO B 902 REMARK 465 ARG B 903 REMARK 465 LYS B 904 REMARK 465 ARG B 905 REMARK 465 GLN B 906 REMARK 465 SER B 907 REMARK 465 LEU B 908 REMARK 465 ARG B 909 REMARK 465 SER B 910 REMARK 465 SER B 911 REMARK 465 SER B 912 REMARK 465 GLU B 977 REMARK 465 ASP B 978 REMARK 465 SER B 979 REMARK 465 SER B 980 REMARK 465 THR B 981 REMARK 465 LYS B 982 REMARK 465 PRO B 983 REMARK 465 PRO B 984 REMARK 465 LYS B 985 REMARK 465 SER B 986 REMARK 465 ARG B 987 REMARK 465 ARG B 988 REMARK 465 LYS B 989 REMARK 465 ALA B 990 REMARK 465 ALA B 991 REMARK 465 LEU B 992 REMARK 465 SER B 993 REMARK 465 SER B 994 REMARK 465 PRO B 995 REMARK 465 ARG B 996 REMARK 465 SER B 997 REMARK 465 ARG B 998 REMARK 465 LYS B 999 REMARK 465 ASN B 1000 REMARK 465 ALA B 1001 REMARK 465 THR B 1002 REMARK 465 GLN B 1003 REMARK 465 PRO B 1004 REMARK 465 PRO B 1005 REMARK 465 ASN B 1006 REMARK 465 ALA B 1007 REMARK 465 GLU B 1008 REMARK 465 GLU B 1009 REMARK 465 GLU B 1010 REMARK 465 SER B 1011 REMARK 465 GLY B 1012 REMARK 465 SER B 1013 REMARK 465 SER B 1014 REMARK 465 SER B 1015 REMARK 465 ALA B 1016 REMARK 465 SER B 1017 REMARK 465 GLU B 1018 REMARK 465 GLU B 1019 REMARK 465 GLU B 1020 REMARK 465 ASP B 1021 REMARK 465 THR B 1022 REMARK 465 LYS B 1023 REMARK 465 PRO B 1024 REMARK 465 LYS B 1025 REMARK 465 PRO B 1026 REMARK 465 THR B 1027 REMARK 465 LYS B 1028 REMARK 465 ARG B 1029 REMARK 465 LYS B 1030 REMARK 465 ARG B 1031 REMARK 465 LYS B 1032 REMARK 465 GLY B 1033 REMARK 465 SER B 1034 REMARK 465 SER B 1035 REMARK 465 ALA B 1036 REMARK 465 VAL B 1037 REMARK 465 GLY B 1038 REMARK 465 SER B 1039 REMARK 465 ASP B 1040 REMARK 465 SER B 1041 REMARK 465 ASP B 1042 REMARK 465 MET C 901 REMARK 465 ARG C 902 REMARK 465 LYS C 903 REMARK 465 ARG C 904 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 701 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 ALA A 701 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 SER A 900 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 SER A 900 N - CA - C ANGL. DEV. = 29.6 DEGREES REMARK 500 LEU A 901 N - CA - CB ANGL. DEV. = -16.8 DEGREES REMARK 500 ALA A 956 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 SER A 957 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 ALA B 628 CB - CA - C ANGL. DEV. = 23.3 DEGREES REMARK 500 HIS B 629 N - CA - CB ANGL. DEV. = -19.8 DEGREES REMARK 500 ILE C 847 CB - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 LEU C 848 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 587 -76.10 -68.36 REMARK 500 THR A 591 -76.04 -42.54 REMARK 500 LEU A 606 -82.68 -77.80 REMARK 500 GLU A 607 -125.61 34.97 REMARK 500 GLU A 608 -138.98 -114.75 REMARK 500 ASP A 611 -141.41 57.93 REMARK 500 SER A 612 -60.37 -160.33 REMARK 500 GLU A 613 42.65 -99.54 REMARK 500 LYS A 627 2.91 -63.38 REMARK 500 ILE A 639 72.69 -110.00 REMARK 500 GLN A 661 52.59 -107.16 REMARK 500 MET A 662 -141.28 -145.04 REMARK 500 GLN A 683 86.67 -154.15 REMARK 500 ALA A 701 -115.81 57.94 REMARK 500 LYS A 703 76.33 -105.15 REMARK 500 ASN A 940 59.15 -97.15 REMARK 500 PHE A 966 38.47 -98.81 REMARK 500 GLN B 573 -93.80 -150.93 REMARK 500 ALA B 593 49.01 -83.71 REMARK 500 GLN B 594 -41.44 -141.68 REMARK 500 VAL B 597 47.49 -103.26 REMARK 500 MET B 598 -32.60 -149.53 REMARK 500 ASP B 611 -165.39 53.34 REMARK 500 PRO B 684 32.30 -77.29 REMARK 500 LEU B 800 -8.11 -58.65 REMARK 500 GLU B 835 -2.70 -156.97 REMARK 500 HIS B 883 57.06 -148.01 REMARK 500 ASN B 936 0.80 -69.06 REMARK 500 SER B 943 73.70 -103.21 REMARK 500 SER B 971 1.30 -66.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HPP A 572 1042 UNP Q68E01 INT3_HUMAN 573 1043 DBREF 8HPP B 572 1042 UNP Q68E01 INT3_HUMAN 573 1043 DBREF 8HPP C 818 904 UNP Q9NXZ1 SAGE1_HUMAN 818 904 SEQADV 8HPP PRO C 815 UNP Q9NXZ1 EXPRESSION TAG SEQADV 8HPP GLY C 816 UNP Q9NXZ1 EXPRESSION TAG SEQADV 8HPP SER C 817 UNP Q9NXZ1 EXPRESSION TAG SEQRES 1 A 471 ASP GLN LEU ASP GLU SER LEU ARG ASP LYS VAL LEU GLN SEQRES 2 A 471 LEU GLN LYS GLY SER ASP THR GLU ALA GLN CYS GLU VAL SEQRES 3 A 471 MET GLN GLU ILE VAL ASP GLN VAL LEU GLU GLU ASP PHE SEQRES 4 A 471 ASP SER GLU GLN LEU SER VAL LEU ALA SER CYS LEU GLN SEQRES 5 A 471 GLU LEU PHE LYS ALA HIS PHE ARG GLY GLU VAL LEU PRO SEQRES 6 A 471 GLU GLU ILE THR GLU GLU SER LEU GLU GLU SER VAL GLY SEQRES 7 A 471 LYS PRO LEU TYR LEU ILE PHE ARG ASN LEU CYS GLN MET SEQRES 8 A 471 GLN GLU ASP ASN SER SER PHE SER LEU LEU LEU ASP LEU SEQRES 9 A 471 LEU SER GLU LEU TYR GLN LYS GLN PRO LYS ILE GLY TYR SEQRES 10 A 471 HIS LEU LEU TYR TYR LEU ARG ALA SER LYS ALA ALA ALA SEQRES 11 A 471 GLY LYS MET ASN LEU TYR GLU SER PHE ALA GLN ALA THR SEQRES 12 A 471 GLN LEU GLY ASP LEU HIS THR CYS LEU MET MET ASP MET SEQRES 13 A 471 LYS ALA CYS GLN GLU ASP ASP VAL ARG LEU LEU CYS HIS SEQRES 14 A 471 LEU THR PRO SER ILE TYR THR GLU PHE PRO ASP GLU THR SEQRES 15 A 471 LEU ARG SER GLY GLU LEU LEU ASN MET ILE VAL ALA VAL SEQRES 16 A 471 ILE ASP SER ALA GLN LEU GLN GLU LEU VAL CYS HIS VAL SEQRES 17 A 471 MET MET GLY ASN LEU VAL MET PHE ARG LYS ASP SER VAL SEQRES 18 A 471 LEU ASN ILE LEU ILE GLN SER LEU ASP TRP GLU THR PHE SEQRES 19 A 471 GLU GLN TYR CYS ALA TRP GLN LEU PHE LEU ALA HIS ASN SEQRES 20 A 471 ILE PRO LEU GLU THR ILE ILE PRO ILE LEU GLN HIS LEU SEQRES 21 A 471 LYS TYR LYS GLU HIS PRO GLU ALA LEU SER CYS LEU LEU SEQRES 22 A 471 LEU GLN LEU ARG ARG GLU LYS PRO SER GLU GLU MET VAL SEQRES 23 A 471 LYS MET VAL LEU SER ARG PRO CYS HIS PRO ASP ASP GLN SEQRES 24 A 471 PHE THR THR SER ILE LEU ARG HIS TRP CYS MET LYS HIS SEQRES 25 A 471 ASP GLU LEU LEU ALA GLU HIS ILE LYS SER LEU LEU ILE SEQRES 26 A 471 LYS ASN ASN SER LEU PRO ARG LYS ARG GLN SER LEU ARG SEQRES 27 A 471 SER SER SER SER LYS LEU ALA GLN LEU THR LEU GLU GLN SEQRES 28 A 471 ILE LEU GLU HIS LEU ASP ASN LEU ARG LEU ASN LEU THR SEQRES 29 A 471 ASN THR LYS GLN ASN PHE PHE SER GLN THR PRO ILE LEU SEQRES 30 A 471 GLN ALA LEU GLN HIS VAL GLN ALA SER CYS ASP GLU ALA SEQRES 31 A 471 HIS LYS MET LYS PHE SER ASP LEU PHE SER LEU ALA GLU SEQRES 32 A 471 GLU TYR GLU ASP SER SER THR LYS PRO PRO LYS SER ARG SEQRES 33 A 471 ARG LYS ALA ALA LEU SER SER PRO ARG SER ARG LYS ASN SEQRES 34 A 471 ALA THR GLN PRO PRO ASN ALA GLU GLU GLU SER GLY SER SEQRES 35 A 471 SER SER ALA SER GLU GLU GLU ASP THR LYS PRO LYS PRO SEQRES 36 A 471 THR LYS ARG LYS ARG LYS GLY SER SER ALA VAL GLY SER SEQRES 37 A 471 ASP SER ASP SEQRES 1 B 471 ASP GLN LEU ASP GLU SER LEU ARG ASP LYS VAL LEU GLN SEQRES 2 B 471 LEU GLN LYS GLY SER ASP THR GLU ALA GLN CYS GLU VAL SEQRES 3 B 471 MET GLN GLU ILE VAL ASP GLN VAL LEU GLU GLU ASP PHE SEQRES 4 B 471 ASP SER GLU GLN LEU SER VAL LEU ALA SER CYS LEU GLN SEQRES 5 B 471 GLU LEU PHE LYS ALA HIS PHE ARG GLY GLU VAL LEU PRO SEQRES 6 B 471 GLU GLU ILE THR GLU GLU SER LEU GLU GLU SER VAL GLY SEQRES 7 B 471 LYS PRO LEU TYR LEU ILE PHE ARG ASN LEU CYS GLN MET SEQRES 8 B 471 GLN GLU ASP ASN SER SER PHE SER LEU LEU LEU ASP LEU SEQRES 9 B 471 LEU SER GLU LEU TYR GLN LYS GLN PRO LYS ILE GLY TYR SEQRES 10 B 471 HIS LEU LEU TYR TYR LEU ARG ALA SER LYS ALA ALA ALA SEQRES 11 B 471 GLY LYS MET ASN LEU TYR GLU SER PHE ALA GLN ALA THR SEQRES 12 B 471 GLN LEU GLY ASP LEU HIS THR CYS LEU MET MET ASP MET SEQRES 13 B 471 LYS ALA CYS GLN GLU ASP ASP VAL ARG LEU LEU CYS HIS SEQRES 14 B 471 LEU THR PRO SER ILE TYR THR GLU PHE PRO ASP GLU THR SEQRES 15 B 471 LEU ARG SER GLY GLU LEU LEU ASN MET ILE VAL ALA VAL SEQRES 16 B 471 ILE ASP SER ALA GLN LEU GLN GLU LEU VAL CYS HIS VAL SEQRES 17 B 471 MET MET GLY ASN LEU VAL MET PHE ARG LYS ASP SER VAL SEQRES 18 B 471 LEU ASN ILE LEU ILE GLN SER LEU ASP TRP GLU THR PHE SEQRES 19 B 471 GLU GLN TYR CYS ALA TRP GLN LEU PHE LEU ALA HIS ASN SEQRES 20 B 471 ILE PRO LEU GLU THR ILE ILE PRO ILE LEU GLN HIS LEU SEQRES 21 B 471 LYS TYR LYS GLU HIS PRO GLU ALA LEU SER CYS LEU LEU SEQRES 22 B 471 LEU GLN LEU ARG ARG GLU LYS PRO SER GLU GLU MET VAL SEQRES 23 B 471 LYS MET VAL LEU SER ARG PRO CYS HIS PRO ASP ASP GLN SEQRES 24 B 471 PHE THR THR SER ILE LEU ARG HIS TRP CYS MET LYS HIS SEQRES 25 B 471 ASP GLU LEU LEU ALA GLU HIS ILE LYS SER LEU LEU ILE SEQRES 26 B 471 LYS ASN ASN SER LEU PRO ARG LYS ARG GLN SER LEU ARG SEQRES 27 B 471 SER SER SER SER LYS LEU ALA GLN LEU THR LEU GLU GLN SEQRES 28 B 471 ILE LEU GLU HIS LEU ASP ASN LEU ARG LEU ASN LEU THR SEQRES 29 B 471 ASN THR LYS GLN ASN PHE PHE SER GLN THR PRO ILE LEU SEQRES 30 B 471 GLN ALA LEU GLN HIS VAL GLN ALA SER CYS ASP GLU ALA SEQRES 31 B 471 HIS LYS MET LYS PHE SER ASP LEU PHE SER LEU ALA GLU SEQRES 32 B 471 GLU TYR GLU ASP SER SER THR LYS PRO PRO LYS SER ARG SEQRES 33 B 471 ARG LYS ALA ALA LEU SER SER PRO ARG SER ARG LYS ASN SEQRES 34 B 471 ALA THR GLN PRO PRO ASN ALA GLU GLU GLU SER GLY SER SEQRES 35 B 471 SER SER ALA SER GLU GLU GLU ASP THR LYS PRO LYS PRO SEQRES 36 B 471 THR LYS ARG LYS ARG LYS GLY SER SER ALA VAL GLY SER SEQRES 37 B 471 ASP SER ASP SEQRES 1 C 90 PRO GLY SER ALA MET ALA LYS LYS ILE ASN ASP ASP ILE SEQRES 2 C 90 LYS TYR GLN LEU MET LYS GLU VAL ARG ARG PHE GLY GLN SEQRES 3 C 90 ASN TYR GLU ARG ILE PHE ILE LEU LEU GLU GLU VAL GLN SEQRES 4 C 90 GLY SER MET LYS VAL LYS ARG GLN PHE VAL GLU PHE THR SEQRES 5 C 90 ILE LYS GLU ALA ALA ARG PHE LYS LYS VAL VAL LEU ILE SEQRES 6 C 90 GLN GLN LEU GLU LYS ALA LEU LYS GLU ILE ASP SER HIS SEQRES 7 C 90 CYS HIS LEU ARG LYS VAL LYS HIS MET ARG LYS ARG HELIX 1 AA1 ASP A 575 ASP A 580 1 6 HELIX 2 AA2 LEU A 583 GLY A 588 1 6 HELIX 3 AA3 ASP A 590 GLN A 604 1 15 HELIX 4 AA4 GLN A 614 LYS A 627 1 14 HELIX 5 AA5 THR A 640 VAL A 648 1 9 HELIX 6 AA6 LYS A 650 GLN A 661 1 12 HELIX 7 AA7 SER A 668 TYR A 680 1 13 HELIX 8 AA8 LYS A 685 SER A 697 1 13 HELIX 9 AA9 MET A 704 GLN A 712 1 9 HELIX 10 AB1 ASP A 718 ASP A 734 1 17 HELIX 11 AB2 ASP A 734 PHE A 749 1 16 HELIX 12 AB3 PHE A 749 LEU A 754 1 6 HELIX 13 AB4 GLY A 757 VAL A 764 1 8 HELIX 14 AB5 ASP A 768 GLY A 782 1 15 HELIX 15 AB6 ARG A 788 LEU A 800 1 13 HELIX 16 AB7 GLU A 803 ASN A 818 1 16 HELIX 17 AB8 ILE A 824 HIS A 830 5 7 HELIX 18 AB9 HIS A 836 ARG A 848 1 13 HELIX 19 AC1 SER A 853 ARG A 863 1 11 HELIX 20 AC2 GLN A 870 HIS A 883 1 14 HELIX 21 AC3 HIS A 883 SER A 900 1 18 HELIX 22 AC4 SER A 913 LEU A 934 1 22 HELIX 23 AC5 THR A 935 THR A 937 5 3 HELIX 24 AC6 GLN A 944 ALA A 956 1 13 HELIX 25 AC7 ALA A 961 LYS A 965 5 5 HELIX 26 AC8 PHE A 966 LEU A 972 1 7 HELIX 27 AC9 THR B 591 GLU B 596 1 6 HELIX 28 AD1 MET B 598 GLN B 604 1 7 HELIX 29 AD2 ALA B 619 GLU B 624 1 6 HELIX 30 AD3 PHE B 626 ARG B 631 1 6 HELIX 31 AD4 THR B 640 GLY B 649 1 10 HELIX 32 AD5 LYS B 650 LEU B 652 5 3 HELIX 33 AD6 TYR B 653 MET B 662 1 10 HELIX 34 AD7 SER B 667 GLN B 683 1 17 HELIX 35 AD8 LYS B 685 SER B 697 1 13 HELIX 36 AD9 MET B 704 THR B 714 1 11 HELIX 37 AE1 ASP B 718 ASP B 734 1 17 HELIX 38 AE2 ASP B 734 PHE B 749 1 16 HELIX 39 AE3 PHE B 749 LEU B 754 1 6 HELIX 40 AE4 GLY B 757 VAL B 764 1 8 HELIX 41 AE5 ASP B 768 MET B 781 1 14 HELIX 42 AE6 ARG B 788 LEU B 800 1 13 HELIX 43 AE7 GLU B 803 ALA B 816 1 14 HELIX 44 AE8 PRO B 820 LEU B 831 5 12 HELIX 45 AE9 HIS B 836 ARG B 848 1 13 HELIX 46 AF1 SER B 853 ARG B 863 1 11 HELIX 47 AF2 GLN B 870 LEU B 901 1 32 HELIX 48 AF3 LYS B 914 THR B 935 1 22 HELIX 49 AF4 GLN B 944 VAL B 954 1 11 HELIX 50 AF5 ASP B 959 MET B 964 1 6 HELIX 51 AF6 PHE B 966 SER B 971 1 6 HELIX 52 AF7 LEU B 972 GLU B 974 5 3 HELIX 53 AF8 SER C 817 ARG C 836 1 20 HELIX 54 AF9 TYR C 842 GLU C 850 1 9 HELIX 55 AG1 SER C 855 PHE C 873 1 19 HELIX 56 AG2 LYS C 875 HIS C 900 1 26 CRYST1 260.119 46.241 103.104 90.00 113.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003844 0.000000 0.001654 0.00000 SCALE2 0.000000 0.021626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010559 0.00000