HEADER IMMUNE SYSTEM 15-DEC-22 8HRH TITLE SN-131/1B2 ANTI-MUC1 ANTIBODY WITH A GLYCOPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF SN-131/1B2 ANTIBODY FAB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF SN-131/1B2 ANTIBODY FAB; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: HYBRIDOMA KEYWDS ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.WAKUI,C.HORIDOME,M.YAO,T.OSE,S.-I.NISHIMURA REVDAT 1 30-AUG-23 8HRH 0 JRNL AUTH H.WAKUI,Y.YOKOI,C.HORIDOME,T.OSE,M.YAO,Y.TANAKA,H.HINOU, JRNL AUTH 2 S.I.NISHIMURA JRNL TITL STRUCTURAL AND MOLECULAR INSIGHT INTO ANTIBODY RECOGNITION JRNL TITL 2 OF DYNAMIC NEOEPITOPES IN MEMBRANE TETHERED MUC1 OF JRNL TITL 3 PANCREATIC CANCER CELLS AND SECRETED EXOSOMES. JRNL REF RSC CHEM BIOL V. 4 564 2023 JRNL REFN ESSN 2633-0679 JRNL PMID 37547453 JRNL DOI 10.1039/D3CB00036B REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16-3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3568 REMARK 3 ANGLE : 0.879 4833 REMARK 3 CHIRALITY : 0.049 536 REMARK 3 PLANARITY : 0.004 596 REMARK 3 DIHEDRAL : 13.383 2088 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1300033581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36078 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 49.766 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 20.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (W/V) PEG300, 5% (W/V) PEG1000, REMARK 280 0.1M TRIS, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 180.84667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.42333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 135.63500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.21167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 226.05833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 180.84667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 90.42333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.21167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 135.63500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 226.05833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLU A -17 REMARK 465 TRP A -16 REMARK 465 ILE A -15 REMARK 465 TRP A -14 REMARK 465 ILE A -13 REMARK 465 PHE A -12 REMARK 465 LEU A -11 REMARK 465 PHE A -10 REMARK 465 ILE A -9 REMARK 465 LEU A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 THR A -5 REMARK 465 ALA A -4 REMARK 465 GLY A -3 REMARK 465 VAL A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 ASP A 135 REMARK 465 THR A 136 REMARK 465 THR A 137 REMARK 465 GLY A 138 REMARK 465 GLY A 219 REMARK 465 PRO A 220 REMARK 465 THR A 221 REMARK 465 ILE A 222 REMARK 465 LYS A 223 REMARK 465 PRO A 224 REMARK 465 CYS A 225 REMARK 465 PRO A 226 REMARK 465 PRO A 227 REMARK 465 CYS A 228 REMARK 465 LYS A 229 REMARK 465 CYS A 230 REMARK 465 PRO A 231 REMARK 465 ALA A 232 REMARK 465 PRO A 233 REMARK 465 ASN A 234 REMARK 465 LEU A 235 REMARK 465 LEU A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 PRO A 239 REMARK 465 SER A 240 REMARK 465 VAL A 241 REMARK 465 PHE A 242 REMARK 465 ILE A 243 REMARK 465 PHE A 244 REMARK 465 PRO A 245 REMARK 465 PRO A 246 REMARK 465 LYS A 247 REMARK 465 ILE A 248 REMARK 465 LYS A 249 REMARK 465 ASP A 250 REMARK 465 VAL A 251 REMARK 465 LEU A 252 REMARK 465 MET A 253 REMARK 465 ILE A 254 REMARK 465 SER A 255 REMARK 465 LEU A 256 REMARK 465 SER A 257 REMARK 465 PRO A 258 REMARK 465 ILE A 259 REMARK 465 VAL A 260 REMARK 465 THR A 261 REMARK 465 CYS A 262 REMARK 465 VAL A 263 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 ASP A 266 REMARK 465 VAL A 267 REMARK 465 SER A 268 REMARK 465 GLU A 269 REMARK 465 ASP A 270 REMARK 465 ASP A 271 REMARK 465 PRO A 272 REMARK 465 ASP A 273 REMARK 465 VAL A 274 REMARK 465 GLN A 275 REMARK 465 ILE A 276 REMARK 465 SER A 277 REMARK 465 TRP A 278 REMARK 465 PHE A 279 REMARK 465 VAL A 280 REMARK 465 ASN A 281 REMARK 465 ASN A 282 REMARK 465 VAL A 283 REMARK 465 GLU A 284 REMARK 465 VAL A 285 REMARK 465 HIS A 286 REMARK 465 THR A 287 REMARK 465 ALA A 288 REMARK 465 GLN A 289 REMARK 465 THR A 290 REMARK 465 GLN A 291 REMARK 465 THR A 292 REMARK 465 HIS A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 ASP A 296 REMARK 465 TYR A 297 REMARK 465 ASN A 298 REMARK 465 SER A 299 REMARK 465 THR A 300 REMARK 465 LEU A 301 REMARK 465 ARG A 302 REMARK 465 VAL A 303 REMARK 465 VAL A 304 REMARK 465 SER A 305 REMARK 465 ALA A 306 REMARK 465 LEU A 307 REMARK 465 PRO A 308 REMARK 465 ILE A 309 REMARK 465 GLN A 310 REMARK 465 HIS A 311 REMARK 465 GLN A 312 REMARK 465 ASP A 313 REMARK 465 TRP A 314 REMARK 465 MET A 315 REMARK 465 SER A 316 REMARK 465 GLY A 317 REMARK 465 LYS A 318 REMARK 465 GLU A 319 REMARK 465 PHE A 320 REMARK 465 LYS A 321 REMARK 465 CYS A 322 REMARK 465 LYS A 323 REMARK 465 VAL A 324 REMARK 465 ASN A 325 REMARK 465 ASN A 326 REMARK 465 LYS A 327 REMARK 465 ASP A 328 REMARK 465 LEU A 329 REMARK 465 PRO A 330 REMARK 465 ALA A 331 REMARK 465 PRO A 332 REMARK 465 ILE A 333 REMARK 465 GLU A 334 REMARK 465 ARG A 335 REMARK 465 THR A 336 REMARK 465 ILE A 337 REMARK 465 SER A 338 REMARK 465 LYS A 339 REMARK 465 PRO A 340 REMARK 465 LYS A 341 REMARK 465 GLY A 342 REMARK 465 SER A 343 REMARK 465 VAL A 344 REMARK 465 ARG A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 GLN A 348 REMARK 465 VAL A 349 REMARK 465 TYR A 350 REMARK 465 VAL A 351 REMARK 465 LEU A 352 REMARK 465 PRO A 353 REMARK 465 PRO A 354 REMARK 465 PRO A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 GLU A 358 REMARK 465 MET A 359 REMARK 465 THR A 360 REMARK 465 LYS A 361 REMARK 465 LYS A 362 REMARK 465 GLN A 363 REMARK 465 VAL A 364 REMARK 465 THR A 365 REMARK 465 LEU A 366 REMARK 465 THR A 367 REMARK 465 CYS A 368 REMARK 465 MET A 369 REMARK 465 VAL A 370 REMARK 465 THR A 371 REMARK 465 ASP A 372 REMARK 465 PHE A 373 REMARK 465 MET A 374 REMARK 465 PRO A 375 REMARK 465 GLU A 376 REMARK 465 ASP A 377 REMARK 465 ILE A 378 REMARK 465 TYR A 379 REMARK 465 VAL A 380 REMARK 465 GLU A 381 REMARK 465 TRP A 382 REMARK 465 THR A 383 REMARK 465 ASN A 384 REMARK 465 ASN A 385 REMARK 465 GLY A 386 REMARK 465 LYS A 387 REMARK 465 THR A 388 REMARK 465 GLU A 389 REMARK 465 LEU A 390 REMARK 465 ASN A 391 REMARK 465 TYR A 392 REMARK 465 LYS A 393 REMARK 465 ASN A 394 REMARK 465 THR A 395 REMARK 465 GLU A 396 REMARK 465 PRO A 397 REMARK 465 VAL A 398 REMARK 465 LEU A 399 REMARK 465 ASP A 400 REMARK 465 SER A 401 REMARK 465 ASP A 402 REMARK 465 GLY A 403 REMARK 465 SER A 404 REMARK 465 TYR A 405 REMARK 465 PHE A 406 REMARK 465 MET A 407 REMARK 465 TYR A 408 REMARK 465 SER A 409 REMARK 465 LYS A 410 REMARK 465 LEU A 411 REMARK 465 ARG A 412 REMARK 465 VAL A 413 REMARK 465 GLU A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 ASN A 417 REMARK 465 TRP A 418 REMARK 465 VAL A 419 REMARK 465 GLU A 420 REMARK 465 ARG A 421 REMARK 465 ASN A 422 REMARK 465 SER A 423 REMARK 465 TYR A 424 REMARK 465 SER A 425 REMARK 465 CYS A 426 REMARK 465 SER A 427 REMARK 465 VAL A 428 REMARK 465 VAL A 429 REMARK 465 HIS A 430 REMARK 465 GLU A 431 REMARK 465 GLY A 432 REMARK 465 LEU A 433 REMARK 465 HIS A 434 REMARK 465 ASN A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 THR A 438 REMARK 465 THR A 439 REMARK 465 LYS A 440 REMARK 465 SER A 441 REMARK 465 PHE A 442 REMARK 465 SER A 443 REMARK 465 ARG A 444 REMARK 465 THR A 445 REMARK 465 PRO A 446 REMARK 465 GLY A 447 REMARK 465 LYS A 448 REMARK 465 MET B -18 REMARK 465 LYS B -17 REMARK 465 LEU B -16 REMARK 465 PRO B -15 REMARK 465 VAL B -14 REMARK 465 ARG B -13 REMARK 465 LEU B -12 REMARK 465 LEU B -11 REMARK 465 VAL B -10 REMARK 465 LEU B -9 REMARK 465 MET B -8 REMARK 465 PHE B -7 REMARK 465 TRP B -6 REMARK 465 ILE B -5 REMARK 465 PRO B -4 REMARK 465 ALA B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 CYS B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ALA A 505 N LPD B 302 1.33 REMARK 500 C THR A 503 N ARG A 504 1.33 REMARK 500 C ASP A 502 N THR A 503 1.33 REMARK 500 NE2 GLN B 27 O HOH B 401 2.16 REMARK 500 O5 A2G D 1 OG1 THR A 503 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 16 -161.68 -100.74 REMARK 500 CYS A 133 85.83 -48.23 REMARK 500 SER A 165 -28.66 -150.44 REMARK 500 SER A 177 -120.58 59.80 REMARK 500 SER A 195 40.53 -72.43 REMARK 500 GLN A 196 125.38 173.16 REMARK 500 VAL B 56 -45.55 76.96 REMARK 500 SER B 57 6.88 -150.90 REMARK 500 ASP B 175 11.53 -142.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ASP A 502 REMARK 610 THR A 503 REMARK 610 ALA A 505 DBREF 8HRH A -18 448 PDB 8HRH 8HRH -18 448 DBREF 8HRH B -18 219 PDB 8HRH 8HRH -18 219 SEQRES 1 A 467 MET GLU TRP ILE TRP ILE PHE LEU PHE ILE LEU SER GLY SEQRES 2 A 467 THR ALA GLY VAL GLN SER GLN VAL GLN LEU GLN GLN SER SEQRES 3 A 467 GLY ALA GLU LEU ALA ARG PRO GLY ALA SER VAL MLY LEU SEQRES 4 A 467 SER CYS LYS ALA SER GLY TYR THR PHE THR ASN TYR GLY SEQRES 5 A 467 LEU SER TRP VAL MLY GLN ARG THR GLY GLN GLY LEU GLU SEQRES 6 A 467 TRP ILE GLY GLU ASN HIS PRO GLY SER GLY ILE ILE TYR SEQRES 7 A 467 HIS ASN GLU LYS PHE ARG GLY MLY ALA THR LEU THR ALA SEQRES 8 A 467 ASP MLY SER SER SER THR ALA TYR VAL GLN LEU SER SER SEQRES 9 A 467 LEU THR SER GLU ASP SER ALA VAL TYR PHE CYS ALA ARG SEQRES 10 A 467 SER SER GLY THR ARG GLY PHE ALA TYR TRP GLY GLN GLY SEQRES 11 A 467 THR LEU VAL THR VAL SER ALA ALA MLY THR THR ALA PRO SEQRES 12 A 467 SER VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR THR SEQRES 13 A 467 GLY SER SER VAL THR LEU GLY CYS LEU VAL MLY GLY TYR SEQRES 14 A 467 PHE PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER SEQRES 15 A 467 LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 16 A 467 SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL THR SEQRES 17 A 467 SER SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL SEQRES 18 A 467 ALA HIS PRO ALA SER SER THR LYS VAL ASP MLY MLY ILE SEQRES 19 A 467 GLU PRO ARG GLY PRO THR ILE LYS PRO CYS PRO PRO CYS SEQRES 20 A 467 LYS CYS PRO ALA PRO ASN LEU LEU GLY GLY PRO SER VAL SEQRES 21 A 467 PHE ILE PHE PRO PRO LYS ILE LYS ASP VAL LEU MET ILE SEQRES 22 A 467 SER LEU SER PRO ILE VAL THR CYS VAL VAL VAL ASP VAL SEQRES 23 A 467 SER GLU ASP ASP PRO ASP VAL GLN ILE SER TRP PHE VAL SEQRES 24 A 467 ASN ASN VAL GLU VAL HIS THR ALA GLN THR GLN THR HIS SEQRES 25 A 467 ARG GLU ASP TYR ASN SER THR LEU ARG VAL VAL SER ALA SEQRES 26 A 467 LEU PRO ILE GLN HIS GLN ASP TRP MET SER GLY LYS GLU SEQRES 27 A 467 PHE LYS CYS LYS VAL ASN ASN LYS ASP LEU PRO ALA PRO SEQRES 28 A 467 ILE GLU ARG THR ILE SER LYS PRO LYS GLY SER VAL ARG SEQRES 29 A 467 ALA PRO GLN VAL TYR VAL LEU PRO PRO PRO GLU GLU GLU SEQRES 30 A 467 MET THR LYS LYS GLN VAL THR LEU THR CYS MET VAL THR SEQRES 31 A 467 ASP PHE MET PRO GLU ASP ILE TYR VAL GLU TRP THR ASN SEQRES 32 A 467 ASN GLY LYS THR GLU LEU ASN TYR LYS ASN THR GLU PRO SEQRES 33 A 467 VAL LEU ASP SER ASP GLY SER TYR PHE MET TYR SER LYS SEQRES 34 A 467 LEU ARG VAL GLU LYS LYS ASN TRP VAL GLU ARG ASN SER SEQRES 35 A 467 TYR SER CYS SER VAL VAL HIS GLU GLY LEU HIS ASN HIS SEQRES 36 A 467 HIS THR THR LYS SER PHE SER ARG THR PRO GLY LYS SEQRES 1 B 238 MET LYS LEU PRO VAL ARG LEU LEU VAL LEU MET PHE TRP SEQRES 2 B 238 ILE PRO ALA SER SER SER ASP VAL LEU MET THR GLN THR SEQRES 3 B 238 PRO LEU SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER SEQRES 4 B 238 ILE SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN SEQRES 5 B 238 GLY ASN THR TYR LEU GLU TRP TYR LEU GLN MLY PRO GLY SEQRES 6 B 238 GLN SER PRO MLY LEU LEU ILE TYR MLY VAL SER ASN ARG SEQRES 7 B 238 PHE SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER SEQRES 8 B 238 GLY THR ASP PHE THR LEU MLY ILE SER ARG VAL GLU ALA SEQRES 9 B 238 GLU ASP LEU GLY VAL TYR TYR CYS PHE GLN GLY SER HIS SEQRES 10 B 238 GLY PRO TRP THR PHE GLY GLY GLY THR LYS LEU GLU ILE SEQRES 11 B 238 MLY ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE PRO SEQRES 12 B 238 PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER VAL SEQRES 13 B 238 VAL CYS PHE LEU ASN ASN PHE TYR PRO MLY ASP ILE ASN SEQRES 14 B 238 VAL MLY TRP MLY ILE ASP GLY SER GLU ARG GLN ASN GLY SEQRES 15 B 238 VAL LEU ASN SER TRP THR ASP GLN ASP SER MLY ASP SER SEQRES 16 B 238 THR TYR SER MET SER SER THR LEU THR LEU THR MLY ASP SEQRES 17 B 238 GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR SEQRES 18 B 238 HIS MLY THR SER THR SER PRO ILE VAL MLY SER PHE ASN SEQRES 19 B 238 ARG ASN GLU CYS HET MLY A 19 11 HET MLY A 38 11 HET MLY A 67 11 HET MLY A 74 11 HET MLY A 120 11 HET MLY A 148 11 HET MLY A 213 11 HET MLY A 214 11 HET MLY B 44 11 HET MLY B 50 11 HET MLY B 55 11 HET MLY B 79 11 HET MLY B 112 11 HET MLY B 147 11 HET MLY B 152 11 HET MLY B 154 11 HET MLY B 174 11 HET MLY B 188 11 HET MLY B 204 11 HET MLY B 212 11 HET A2G D 1 14 HET GAL D 2 11 HET SIA D 3 20 HET N7P A 501 10 HET ASP A 502 8 HET THR A 503 7 HET ARG A 504 11 HET ALA A 505 5 HET TRS A 506 8 HET PEG A 507 7 HET PEG A 508 7 HET GOL A 509 6 HET GOL A 510 6 HET PRO B 301 7 HET LPD B 302 8 HET PEG B 303 7 HET PEG B 304 7 HET PEG B 305 7 HET PEG B 306 7 HET PEG B 307 7 HETNAM MLY N-DIMETHYL-LYSINE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM N7P 1-ACETYL-L-PROLINE HETNAM ASP ASPARTIC ACID HETNAM THR THREONINE HETNAM ARG ARGININE HETNAM ALA ALANINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM PRO PROLINE HETNAM LPD L-PROLINAMIDE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN N7P N-ACETYLPROLINE HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MLY 20(C8 H18 N2 O2) FORMUL 3 A2G C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 4 N7P C7 H11 N O3 FORMUL 5 ASP C4 H7 N O4 FORMUL 6 THR C4 H9 N O3 FORMUL 7 ARG C6 H15 N4 O2 1+ FORMUL 8 ALA C3 H7 N O2 FORMUL 9 TRS C4 H12 N O3 1+ FORMUL 10 PEG 7(C4 H10 O3) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 14 PRO C5 H9 N O2 FORMUL 15 LPD C5 H10 N2 O FORMUL 21 HOH *213(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 ASN A 61 ARG A 65 5 5 HELIX 3 AA3 THR A 87 SER A 91 5 5 HELIX 4 AA4 SER A 161 SER A 163 5 3 HELIX 5 AA5 PRO A 205 SER A 208 5 4 HELIX 6 AA6 GLU B 84 LEU B 88 5 5 HELIX 7 AA7 SER B 126 SER B 132 1 7 HELIX 8 AA8 MLY B 188 GLU B 192 1 5 SHEET 1 AA1 4 GLN A 3 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 25 -1 O LYS A 23 N GLN A 5 SHEET 3 AA1 4 THR A 78 LEU A 83 -1 O ALA A 79 N CYS A 22 SHEET 4 AA1 4 ALA A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 GLU A 10 ALA A 12 0 SHEET 2 AA2 6 THR A 112 VAL A 116 1 O THR A 115 N ALA A 12 SHEET 3 AA2 6 ALA A 92 SER A 100 -1 N ALA A 92 O VAL A 114 SHEET 4 AA2 6 GLY A 33 GLN A 39 -1 N VAL A 37 O PHE A 95 SHEET 5 AA2 6 LEU A 45 ASN A 51 -1 O GLU A 46 N MLY A 38 SHEET 6 AA2 6 ILE A 58 TYR A 59 -1 O TYR A 59 N GLU A 50 SHEET 1 AA3 4 GLU A 10 ALA A 12 0 SHEET 2 AA3 4 THR A 112 VAL A 116 1 O THR A 115 N ALA A 12 SHEET 3 AA3 4 ALA A 92 SER A 100 -1 N ALA A 92 O VAL A 114 SHEET 4 AA3 4 GLY A 104 TRP A 108 -1 O TYR A 107 N ARG A 98 SHEET 1 AA4 4 SER A 125 LEU A 129 0 SHEET 2 AA4 4 SER A 140 TYR A 150 -1 O LEU A 146 N TYR A 127 SHEET 3 AA4 4 LEU A 179 THR A 189 -1 O TYR A 180 N TYR A 150 SHEET 4 AA4 4 VAL A 168 THR A 170 -1 N HIS A 169 O SER A 185 SHEET 1 AA5 4 SER A 125 LEU A 129 0 SHEET 2 AA5 4 SER A 140 TYR A 150 -1 O LEU A 146 N TYR A 127 SHEET 3 AA5 4 LEU A 179 THR A 189 -1 O TYR A 180 N TYR A 150 SHEET 4 AA5 4 VAL A 174 GLN A 176 -1 N GLN A 176 O LEU A 179 SHEET 1 AA6 3 THR A 156 TRP A 159 0 SHEET 2 AA6 3 THR A 199 HIS A 204 -1 O ASN A 201 N THR A 158 SHEET 3 AA6 3 THR A 209 MLY A 214 -1 O THR A 209 N HIS A 204 SHEET 1 AA7 4 MET B 4 THR B 7 0 SHEET 2 AA7 4 ALA B 19 SER B 25 -1 O ARG B 24 N THR B 5 SHEET 3 AA7 4 ASP B 75 ILE B 80 -1 O ILE B 80 N ALA B 19 SHEET 4 AA7 4 PHE B 67 SER B 72 -1 N SER B 68 O MLY B 79 SHEET 1 AA8 6 SER B 10 SER B 14 0 SHEET 2 AA8 6 THR B 107 MLY B 112 1 O LYS B 108 N LEU B 11 SHEET 3 AA8 6 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA8 6 LEU B 38 GLN B 43 -1 N TYR B 41 O TYR B 92 SHEET 5 AA8 6 MLY B 50 TYR B 54 -1 O LEU B 52 N TRP B 40 SHEET 6 AA8 6 ASN B 58 ARG B 59 -1 O ASN B 58 N TYR B 54 SHEET 1 AA9 4 SER B 10 SER B 14 0 SHEET 2 AA9 4 THR B 107 MLY B 112 1 O LYS B 108 N LEU B 11 SHEET 3 AA9 4 GLY B 89 GLN B 95 -1 N GLY B 89 O LEU B 109 SHEET 4 AA9 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 SHEET 1 AB1 4 THR B 119 PHE B 123 0 SHEET 2 AB1 4 GLY B 134 PHE B 144 -1 O PHE B 140 N SER B 121 SHEET 3 AB1 4 TYR B 178 THR B 187 -1 O LEU B 184 N VAL B 137 SHEET 4 AB1 4 VAL B 164 TRP B 168 -1 N SER B 167 O SER B 181 SHEET 1 AB2 4 SER B 158 ARG B 160 0 SHEET 2 AB2 4 ILE B 149 ILE B 155 -1 N ILE B 155 O SER B 158 SHEET 3 AB2 4 SER B 196 HIS B 203 -1 O GLU B 200 N MLY B 152 SHEET 4 AB2 4 ILE B 210 ASN B 215 -1 O ILE B 210 N ALA B 201 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 145 CYS A 200 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 93 1555 1555 2.05 SSBOND 4 CYS B 139 CYS B 199 1555 1555 2.05 LINK C VAL A 18 N MLY A 19 1555 1555 1.33 LINK C MLY A 19 N LEU A 20 1555 1555 1.33 LINK C VAL A 37 N MLY A 38 1555 1555 1.33 LINK C MLY A 38 N GLN A 39 1555 1555 1.33 LINK C GLY A 66 N MLY A 67 1555 1555 1.33 LINK C MLY A 67 N ALA A 68 1555 1555 1.33 LINK C ASP A 73 N MLY A 74 1555 1555 1.33 LINK C MLY A 74 N SER A 75 1555 1555 1.33 LINK C ALA A 119 N MLY A 120 1555 1555 1.33 LINK C MLY A 120 N THR A 121 1555 1555 1.32 LINK C VAL A 147 N MLY A 148 1555 1555 1.33 LINK C MLY A 148 N GLY A 149 1555 1555 1.33 LINK C ASP A 212 N MLY A 213 1555 1555 1.33 LINK C MLY A 213 N MLY A 214 1555 1555 1.33 LINK C MLY A 214 N ILE A 215 1555 1555 1.33 LINK C N7P A 501 N ASP A 502 1555 1555 1.31 LINK OG1 THR A 503 C1 A2G D 1 1555 1555 1.41 LINK C ARG A 504 N PRO B 301 1555 1555 1.33 LINK N ALA A 505 C PRO B 301 1555 1555 1.33 LINK C GLN B 43 N MLY B 44 1555 1555 1.33 LINK C MLY B 44 N PRO B 45 1555 1555 1.35 LINK C PRO B 49 N MLY B 50 1555 1555 1.33 LINK C MLY B 50 N LEU B 51 1555 1555 1.33 LINK C TYR B 54 N MLY B 55 1555 1555 1.34 LINK C MLY B 55 N VAL B 56 1555 1555 1.34 LINK C LEU B 78 N MLY B 79 1555 1555 1.33 LINK C MLY B 79 N ILE B 80 1555 1555 1.33 LINK C ILE B 111 N MLY B 112 1555 1555 1.33 LINK C MLY B 112 N ARG B 113 1555 1555 1.33 LINK C PRO B 146 N MLY B 147 1555 1555 1.33 LINK C MLY B 147 N ASP B 148 1555 1555 1.33 LINK C VAL B 151 N MLY B 152 1555 1555 1.33 LINK C MLY B 152 N TRP B 153 1555 1555 1.33 LINK C TRP B 153 N MLY B 154 1555 1555 1.33 LINK C MLY B 154 N ILE B 155 1555 1555 1.33 LINK C SER B 173 N MLY B 174 1555 1555 1.33 LINK C MLY B 174 N ASP B 175 1555 1555 1.33 LINK C THR B 187 N MLY B 188 1555 1555 1.33 LINK C MLY B 188 N ASP B 189 1555 1555 1.33 LINK C HIS B 203 N MLY B 204 1555 1555 1.33 LINK C MLY B 204 N THR B 205 1555 1555 1.33 LINK C VAL B 211 N MLY B 212 1555 1555 1.33 LINK C MLY B 212 N SER B 213 1555 1555 1.33 LINK O3 A2G D 1 C1 GAL D 2 1555 1555 1.41 LINK O3 GAL D 2 C2 SIA D 3 1555 1555 1.42 CISPEP 1 PHE A 151 PRO A 152 0 -4.99 CISPEP 2 GLU A 153 PRO A 154 0 1.54 CISPEP 3 TRP A 193 PRO A 194 0 0.73 CISPEP 4 THR B 7 PRO B 8 0 -4.08 CISPEP 5 GLY B 99 PRO B 100 0 -6.46 CISPEP 6 TYR B 145 PRO B 146 0 2.49 CRYST1 84.590 84.590 271.270 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011822 0.006825 0.000000 0.00000 SCALE2 0.000000 0.013651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003686 0.00000