HEADER TRANSLATION 25-DEC-22 8HUZ TITLE THE STRUCTURE OF TRANS-EDITING FACTOR PROX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN COMPND 3 1; COMPND 4 CHAIN: F, A, B, C, D, E; COMPND 5 SYNONYM: PRDX DEACYLASE DOMAIN-CONTAINING PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRORSD1, PRDXDD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOACYLATION, EDITING, TRNA, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR M.CHEN,X.ZHOU REVDAT 1 17-JAN-24 8HUZ 0 JRNL AUTH C.YUAN,Y.XIAO,X.ZHOU,M.CHEN JRNL TITL THE STRUCTURE OF TRANS-EDITING FACTOR PROX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V3.0 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.291 REMARK 3 R VALUE (WORKING SET) : 0.286 REMARK 3 FREE R VALUE : 0.337 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.480 REMARK 3 FREE R VALUE TEST SET COUNT : 3745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6770 - 9.8719 0.98 1305 128 0.2413 0.2821 REMARK 3 2 9.8719 - 7.8470 1.00 1315 150 0.2128 0.2825 REMARK 3 3 7.8470 - 6.8583 1.00 1337 138 0.2794 0.2764 REMARK 3 4 6.8583 - 6.2328 1.00 1324 136 0.3110 0.3531 REMARK 3 5 6.2328 - 5.7868 1.00 1320 141 0.3059 0.3332 REMARK 3 6 5.7868 - 5.4462 1.00 1334 132 0.2711 0.3637 REMARK 3 7 5.4462 - 5.1738 1.00 1334 147 0.2664 0.2856 REMARK 3 8 5.1738 - 4.9488 1.00 1320 129 0.2621 0.3290 REMARK 3 9 4.9488 - 4.7585 1.00 1325 149 0.2752 0.3644 REMARK 3 10 4.7585 - 4.5944 1.00 1315 139 0.2740 0.3133 REMARK 3 11 4.5944 - 4.4508 1.00 1330 135 0.2734 0.2897 REMARK 3 12 4.4508 - 4.3237 1.00 1321 157 0.2915 0.3470 REMARK 3 13 4.3237 - 4.2099 1.00 1352 129 0.2990 0.3320 REMARK 3 14 4.2099 - 4.1073 1.00 1315 129 0.3000 0.4390 REMARK 3 15 4.1073 - 4.0140 1.00 1327 143 0.3189 0.3532 REMARK 3 16 4.0140 - 3.9286 1.00 1313 150 0.3278 0.3779 REMARK 3 17 3.9286 - 3.8500 1.00 1348 133 0.3412 0.4035 REMARK 3 18 3.8500 - 3.7774 1.00 1316 132 0.3390 0.3959 REMARK 3 19 3.7774 - 3.7100 1.00 1359 138 0.3291 0.4653 REMARK 3 20 3.7100 - 3.6471 1.00 1284 143 0.3245 0.3866 REMARK 3 21 3.6471 - 3.5883 0.99 1323 118 0.3391 0.4258 REMARK 3 22 3.5883 - 3.5331 1.00 1364 136 0.3486 0.3772 REMARK 3 23 3.5331 - 3.4812 0.99 1263 160 0.3527 0.4297 REMARK 3 24 3.4812 - 3.4322 0.99 1358 160 0.3559 0.3743 REMARK 3 25 3.4322 - 3.3858 0.99 1270 137 0.3837 0.3845 REMARK 3 26 3.3858 - 3.3418 0.99 1311 152 0.3825 0.4515 REMARK 3 27 3.3418 - 3.3001 1.00 1362 104 0.3992 0.4538 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.610 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7351 REMARK 3 ANGLE : 0.707 9925 REMARK 3 CHIRALITY : 0.044 1136 REMARK 3 PLANARITY : 0.004 1290 REMARK 3 DIHEDRAL : 9.769 4367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.4220 -40.8288 -19.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.8774 T22: 0.8498 REMARK 3 T33: 0.9112 T12: 0.0139 REMARK 3 T13: 0.1351 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 0.6699 L22: 0.0563 REMARK 3 L33: 0.5827 L12: 0.1601 REMARK 3 L13: -0.2437 L23: 0.0980 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: 0.0905 S13: 0.0820 REMARK 3 S21: -0.2745 S22: -0.0456 S23: -0.0900 REMARK 3 S31: -0.0851 S32: -0.0857 S33: -0.0232 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300033948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21079 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 47.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS-TRIS, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.40100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.76300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.36100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.76300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.40100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.36100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 GLY F 3 REMARK 465 SER F 4 REMARK 465 GLU F 5 REMARK 465 GLU F 28 REMARK 465 VAL F 29 REMARK 465 PHE F 30 REMARK 465 VAL F 82 REMARK 465 GLY F 83 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 28 REMARK 465 VAL A 29 REMARK 465 PHE A 30 REMARK 465 LYS A 55 REMARK 465 LYS A 56 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 VAL B 82 REMARK 465 GLY B 83 REMARK 465 SER B 84 REMARK 465 GLY B 85 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 28 REMARK 465 LYS C 55 REMARK 465 LYS C 56 REMARK 465 VAL C 82 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 GLU D 5 REMARK 465 LYS D 55 REMARK 465 LYS D 56 REMARK 465 LYS D 57 REMARK 465 VAL D 82 REMARK 465 GLY D 83 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 GLY E 3 REMARK 465 SER E 4 REMARK 465 GLU E 5 REMARK 465 LYS E 55 REMARK 465 LYS E 56 REMARK 465 LYS E 57 REMARK 465 VAL E 82 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR F 31 OG1 CG2 REMARK 470 ILE F 32 CG1 CG2 CD1 REMARK 470 GLU F 33 CG CD OE1 OE2 REMARK 470 GLU F 34 CG CD OE1 OE2 REMARK 470 MET F 35 CG SD CE REMARK 470 MET F 36 CG SD CE REMARK 470 PRO F 37 CG CD REMARK 470 HIS F 38 CG ND1 CD2 CE1 NE2 REMARK 470 ILE F 39 CG1 CG2 CD1 REMARK 470 GLN F 40 CG CD OE1 NE2 REMARK 470 HIS F 41 CG ND1 CD2 CE1 NE2 REMARK 470 LEU F 42 CG CD1 CD2 REMARK 470 LYS F 43 CG CD CE NZ REMARK 470 THR A 31 OG1 CG2 REMARK 470 ILE A 32 CG1 CG2 CD1 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 MET A 35 CG SD CE REMARK 470 MET A 36 CG SD CE REMARK 470 PRO A 37 CG CD REMARK 470 HIS A 38 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 HIS A 41 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 PRO B 27 CG CD REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 VAL B 29 CG1 CG2 REMARK 470 PHE B 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 31 OG1 CG2 REMARK 470 ILE B 32 CG1 CG2 CD1 REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 MET B 35 CG SD CE REMARK 470 MET B 36 CG SD CE REMARK 470 PRO B 37 CG CD REMARK 470 HIS B 38 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 39 CG1 CG2 CD1 REMARK 470 GLN B 40 CG CD OE1 NE2 REMARK 470 HIS B 41 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 42 CG CD1 CD2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 ASP B 91 CG OD1 OD2 REMARK 470 VAL C 29 CG1 CG2 REMARK 470 PHE C 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR C 31 OG1 CG2 REMARK 470 ILE C 32 CG1 CG2 CD1 REMARK 470 GLU C 33 CG CD OE1 OE2 REMARK 470 GLU C 34 CG CD OE1 OE2 REMARK 470 MET C 35 CG SD CE REMARK 470 MET C 36 CG SD CE REMARK 470 PRO C 37 CG CD REMARK 470 HIS C 38 CG ND1 CD2 CE1 NE2 REMARK 470 ILE C 39 CG1 CG2 CD1 REMARK 470 GLN C 40 CG CD OE1 NE2 REMARK 470 HIS C 41 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 42 CG CD1 CD2 REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 PRO D 27 CG CD REMARK 470 GLU D 28 CG CD OE1 OE2 REMARK 470 VAL D 29 CG1 CG2 REMARK 470 PHE D 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR D 31 OG1 CG2 REMARK 470 ILE D 32 CG1 CG2 CD1 REMARK 470 GLU D 33 CG CD OE1 OE2 REMARK 470 GLU D 34 CG CD OE1 OE2 REMARK 470 MET D 35 CG SD CE REMARK 470 MET D 36 CG SD CE REMARK 470 PRO D 37 CG CD REMARK 470 HIS D 38 CG ND1 CD2 CE1 NE2 REMARK 470 ILE D 39 CG1 CG2 CD1 REMARK 470 GLN D 40 CG CD OE1 NE2 REMARK 470 HIS D 41 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 42 CG CD1 CD2 REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 GLU E 28 CG CD OE1 OE2 REMARK 470 VAL E 29 CG1 CG2 REMARK 470 PHE E 30 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR E 31 OG1 CG2 REMARK 470 ILE E 32 CG1 CG2 CD1 REMARK 470 GLU E 33 CG CD OE1 OE2 REMARK 470 GLU E 34 CG CD OE1 OE2 REMARK 470 MET E 35 CG SD CE REMARK 470 MET E 36 CG SD CE REMARK 470 PRO E 37 CG CD REMARK 470 HIS E 38 CG ND1 CD2 CE1 NE2 REMARK 470 ILE E 39 CG1 CG2 CD1 REMARK 470 GLN E 40 CG CD OE1 NE2 REMARK 470 HIS E 41 CG ND1 CD2 CE1 NE2 REMARK 470 LEU E 42 CG CD1 CD2 REMARK 470 LYS E 43 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU E 99 OG SER E 110 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 27 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 PRO D 27 N - CA - CB ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F 103 -7.96 66.75 REMARK 500 GLU A 34 11.53 -67.83 REMARK 500 MET A 35 9.72 -68.92 REMARK 500 LYS A 58 -50.58 -122.46 REMARK 500 GLN A 103 -7.14 66.16 REMARK 500 PRO A 138 58.97 -90.29 REMARK 500 PRO B 27 -155.18 -142.87 REMARK 500 GLU B 28 -168.33 -74.89 REMARK 500 GLN B 103 -8.20 67.63 REMARK 500 PHE C 30 116.36 -162.20 REMARK 500 SER C 84 -168.19 -79.14 REMARK 500 GLN C 103 -8.17 66.66 REMARK 500 ILE D 39 35.80 -83.79 REMARK 500 GLN D 103 -7.28 66.57 REMARK 500 VAL E 29 71.17 59.67 REMARK 500 ILE E 39 36.30 -82.97 REMARK 500 GLN E 103 -8.20 67.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 8HUZ F 1 169 UNP Q9D820 PRXD1_MOUSE 1 169 DBREF 8HUZ A 1 169 UNP Q9D820 PRXD1_MOUSE 1 169 DBREF 8HUZ B 1 169 UNP Q9D820 PRXD1_MOUSE 1 169 DBREF 8HUZ C 1 169 UNP Q9D820 PRXD1_MOUSE 1 169 DBREF 8HUZ D 1 169 UNP Q9D820 PRXD1_MOUSE 1 169 DBREF 8HUZ E 1 169 UNP Q9D820 PRXD1_MOUSE 1 169 SEQRES 1 F 169 MET ALA GLY SER GLU LEU ARG ALA GLU LEU GLU GLN ARG SEQRES 2 F 169 LEU GLY ALA LEU ALA ILE ARG THR GLU VAL VAL GLU HIS SEQRES 3 F 169 PRO GLU VAL PHE THR ILE GLU GLU MET MET PRO HIS ILE SEQRES 4 F 169 GLN HIS LEU LYS GLY ALA HIS SER LYS ASN LEU PHE LEU SEQRES 5 F 169 LYS ASP LYS LYS LYS LYS ASN TYR TRP LEU VAL THR VAL SEQRES 6 F 169 LEU HIS ASP ARG GLN ILE ASN LEU ASN ASP LEU GLY LYS SEQRES 7 F 169 GLN LEU GLY VAL GLY SER GLY ASN LEU ARG PHE ALA ASP SEQRES 8 F 169 GLU THR ALA MET LEU GLU LYS LEU LYS VAL GLY GLN GLY SEQRES 9 F 169 CYS ALA THR PRO LEU SER LEU PHE CYS ASP ASP GLY ASP SEQRES 10 F 169 VAL LYS PHE VAL LEU ASP SER ALA PHE LEU GLU GLY GLY SEQRES 11 F 169 HIS GLU LYS VAL TYR PHE HIS PRO MET THR ASN ALA ALA SEQRES 12 F 169 THR MET GLY LEU SER PRO GLU ASP PHE LEU ILE PHE VAL SEQRES 13 F 169 LYS ALA THR GLY HIS ASP PRO ILE ILE LEU ASN PHE ASP SEQRES 1 A 169 MET ALA GLY SER GLU LEU ARG ALA GLU LEU GLU GLN ARG SEQRES 2 A 169 LEU GLY ALA LEU ALA ILE ARG THR GLU VAL VAL GLU HIS SEQRES 3 A 169 PRO GLU VAL PHE THR ILE GLU GLU MET MET PRO HIS ILE SEQRES 4 A 169 GLN HIS LEU LYS GLY ALA HIS SER LYS ASN LEU PHE LEU SEQRES 5 A 169 LYS ASP LYS LYS LYS LYS ASN TYR TRP LEU VAL THR VAL SEQRES 6 A 169 LEU HIS ASP ARG GLN ILE ASN LEU ASN ASP LEU GLY LYS SEQRES 7 A 169 GLN LEU GLY VAL GLY SER GLY ASN LEU ARG PHE ALA ASP SEQRES 8 A 169 GLU THR ALA MET LEU GLU LYS LEU LYS VAL GLY GLN GLY SEQRES 9 A 169 CYS ALA THR PRO LEU SER LEU PHE CYS ASP ASP GLY ASP SEQRES 10 A 169 VAL LYS PHE VAL LEU ASP SER ALA PHE LEU GLU GLY GLY SEQRES 11 A 169 HIS GLU LYS VAL TYR PHE HIS PRO MET THR ASN ALA ALA SEQRES 12 A 169 THR MET GLY LEU SER PRO GLU ASP PHE LEU ILE PHE VAL SEQRES 13 A 169 LYS ALA THR GLY HIS ASP PRO ILE ILE LEU ASN PHE ASP SEQRES 1 B 169 MET ALA GLY SER GLU LEU ARG ALA GLU LEU GLU GLN ARG SEQRES 2 B 169 LEU GLY ALA LEU ALA ILE ARG THR GLU VAL VAL GLU HIS SEQRES 3 B 169 PRO GLU VAL PHE THR ILE GLU GLU MET MET PRO HIS ILE SEQRES 4 B 169 GLN HIS LEU LYS GLY ALA HIS SER LYS ASN LEU PHE LEU SEQRES 5 B 169 LYS ASP LYS LYS LYS LYS ASN TYR TRP LEU VAL THR VAL SEQRES 6 B 169 LEU HIS ASP ARG GLN ILE ASN LEU ASN ASP LEU GLY LYS SEQRES 7 B 169 GLN LEU GLY VAL GLY SER GLY ASN LEU ARG PHE ALA ASP SEQRES 8 B 169 GLU THR ALA MET LEU GLU LYS LEU LYS VAL GLY GLN GLY SEQRES 9 B 169 CYS ALA THR PRO LEU SER LEU PHE CYS ASP ASP GLY ASP SEQRES 10 B 169 VAL LYS PHE VAL LEU ASP SER ALA PHE LEU GLU GLY GLY SEQRES 11 B 169 HIS GLU LYS VAL TYR PHE HIS PRO MET THR ASN ALA ALA SEQRES 12 B 169 THR MET GLY LEU SER PRO GLU ASP PHE LEU ILE PHE VAL SEQRES 13 B 169 LYS ALA THR GLY HIS ASP PRO ILE ILE LEU ASN PHE ASP SEQRES 1 C 169 MET ALA GLY SER GLU LEU ARG ALA GLU LEU GLU GLN ARG SEQRES 2 C 169 LEU GLY ALA LEU ALA ILE ARG THR GLU VAL VAL GLU HIS SEQRES 3 C 169 PRO GLU VAL PHE THR ILE GLU GLU MET MET PRO HIS ILE SEQRES 4 C 169 GLN HIS LEU LYS GLY ALA HIS SER LYS ASN LEU PHE LEU SEQRES 5 C 169 LYS ASP LYS LYS LYS LYS ASN TYR TRP LEU VAL THR VAL SEQRES 6 C 169 LEU HIS ASP ARG GLN ILE ASN LEU ASN ASP LEU GLY LYS SEQRES 7 C 169 GLN LEU GLY VAL GLY SER GLY ASN LEU ARG PHE ALA ASP SEQRES 8 C 169 GLU THR ALA MET LEU GLU LYS LEU LYS VAL GLY GLN GLY SEQRES 9 C 169 CYS ALA THR PRO LEU SER LEU PHE CYS ASP ASP GLY ASP SEQRES 10 C 169 VAL LYS PHE VAL LEU ASP SER ALA PHE LEU GLU GLY GLY SEQRES 11 C 169 HIS GLU LYS VAL TYR PHE HIS PRO MET THR ASN ALA ALA SEQRES 12 C 169 THR MET GLY LEU SER PRO GLU ASP PHE LEU ILE PHE VAL SEQRES 13 C 169 LYS ALA THR GLY HIS ASP PRO ILE ILE LEU ASN PHE ASP SEQRES 1 D 169 MET ALA GLY SER GLU LEU ARG ALA GLU LEU GLU GLN ARG SEQRES 2 D 169 LEU GLY ALA LEU ALA ILE ARG THR GLU VAL VAL GLU HIS SEQRES 3 D 169 PRO GLU VAL PHE THR ILE GLU GLU MET MET PRO HIS ILE SEQRES 4 D 169 GLN HIS LEU LYS GLY ALA HIS SER LYS ASN LEU PHE LEU SEQRES 5 D 169 LYS ASP LYS LYS LYS LYS ASN TYR TRP LEU VAL THR VAL SEQRES 6 D 169 LEU HIS ASP ARG GLN ILE ASN LEU ASN ASP LEU GLY LYS SEQRES 7 D 169 GLN LEU GLY VAL GLY SER GLY ASN LEU ARG PHE ALA ASP SEQRES 8 D 169 GLU THR ALA MET LEU GLU LYS LEU LYS VAL GLY GLN GLY SEQRES 9 D 169 CYS ALA THR PRO LEU SER LEU PHE CYS ASP ASP GLY ASP SEQRES 10 D 169 VAL LYS PHE VAL LEU ASP SER ALA PHE LEU GLU GLY GLY SEQRES 11 D 169 HIS GLU LYS VAL TYR PHE HIS PRO MET THR ASN ALA ALA SEQRES 12 D 169 THR MET GLY LEU SER PRO GLU ASP PHE LEU ILE PHE VAL SEQRES 13 D 169 LYS ALA THR GLY HIS ASP PRO ILE ILE LEU ASN PHE ASP SEQRES 1 E 169 MET ALA GLY SER GLU LEU ARG ALA GLU LEU GLU GLN ARG SEQRES 2 E 169 LEU GLY ALA LEU ALA ILE ARG THR GLU VAL VAL GLU HIS SEQRES 3 E 169 PRO GLU VAL PHE THR ILE GLU GLU MET MET PRO HIS ILE SEQRES 4 E 169 GLN HIS LEU LYS GLY ALA HIS SER LYS ASN LEU PHE LEU SEQRES 5 E 169 LYS ASP LYS LYS LYS LYS ASN TYR TRP LEU VAL THR VAL SEQRES 6 E 169 LEU HIS ASP ARG GLN ILE ASN LEU ASN ASP LEU GLY LYS SEQRES 7 E 169 GLN LEU GLY VAL GLY SER GLY ASN LEU ARG PHE ALA ASP SEQRES 8 E 169 GLU THR ALA MET LEU GLU LYS LEU LYS VAL GLY GLN GLY SEQRES 9 E 169 CYS ALA THR PRO LEU SER LEU PHE CYS ASP ASP GLY ASP SEQRES 10 E 169 VAL LYS PHE VAL LEU ASP SER ALA PHE LEU GLU GLY GLY SEQRES 11 E 169 HIS GLU LYS VAL TYR PHE HIS PRO MET THR ASN ALA ALA SEQRES 12 E 169 THR MET GLY LEU SER PRO GLU ASP PHE LEU ILE PHE VAL SEQRES 13 E 169 LYS ALA THR GLY HIS ASP PRO ILE ILE LEU ASN PHE ASP HELIX 1 AA1 LEU F 6 LEU F 17 1 12 HELIX 2 AA2 ILE F 32 GLN F 40 1 9 HELIX 3 AA3 ASN F 72 GLY F 81 1 10 HELIX 4 AA4 ASP F 91 LYS F 100 1 10 HELIX 5 AA5 ALA F 125 LEU F 127 5 3 HELIX 6 AA6 SER F 148 THR F 159 1 12 HELIX 7 AA7 ARG A 7 LEU A 17 1 11 HELIX 8 AA8 MET A 35 GLN A 40 1 6 HELIX 9 AA9 ASN A 72 GLY A 81 1 10 HELIX 10 AB1 ASP A 91 LYS A 100 1 10 HELIX 11 AB2 ALA A 125 LEU A 127 5 3 HELIX 12 AB3 SER A 148 THR A 159 1 12 HELIX 13 AB4 ARG B 7 LEU B 17 1 11 HELIX 14 AB5 THR B 31 LEU B 42 1 12 HELIX 15 AB6 ASN B 72 GLY B 81 1 10 HELIX 16 AB7 ASP B 91 LYS B 100 1 10 HELIX 17 AB8 THR B 107 LEU B 111 5 5 HELIX 18 AB9 ALA B 125 LEU B 127 5 3 HELIX 19 AC1 SER B 148 THR B 159 1 12 HELIX 20 AC2 ARG C 7 LEU C 17 1 11 HELIX 21 AC3 THR C 31 LYS C 43 1 13 HELIX 22 AC4 ASN C 72 GLY C 81 1 10 HELIX 23 AC5 ASP C 91 LYS C 100 1 10 HELIX 24 AC6 ALA C 125 LEU C 127 5 3 HELIX 25 AC7 SER C 148 THR C 159 1 12 HELIX 26 AC8 ARG D 7 ALA D 18 1 12 HELIX 27 AC9 THR D 31 ILE D 39 1 9 HELIX 28 AD1 ASN D 72 GLY D 81 1 10 HELIX 29 AD2 ASP D 91 LYS D 100 1 10 HELIX 30 AD3 ALA D 125 LEU D 127 5 3 HELIX 31 AD4 SER D 148 THR D 159 1 12 HELIX 32 AD5 ARG E 7 LEU E 17 1 11 HELIX 33 AD6 THR E 31 ILE E 39 1 9 HELIX 34 AD7 ASN E 72 GLY E 81 1 10 HELIX 35 AD8 ASP E 91 LYS E 100 1 10 HELIX 36 AD9 ALA E 125 LEU E 127 5 3 HELIX 37 AE1 SER E 148 THR E 159 1 12 SHEET 1 AA1 3 GLU F 22 GLU F 25 0 SHEET 2 AA1 3 ALA F 143 LEU F 147 -1 O GLY F 146 N GLU F 22 SHEET 3 AA1 3 VAL F 134 PHE F 136 -1 N VAL F 134 O LEU F 147 SHEET 1 AA2 5 LEU F 87 PHE F 89 0 SHEET 2 AA2 5 SER F 47 ASP F 54 -1 N LYS F 53 O ARG F 88 SHEET 3 AA2 5 ASN F 59 LEU F 66 -1 O VAL F 63 N LEU F 50 SHEET 4 AA2 5 VAL F 118 ASP F 123 1 O LYS F 119 N LEU F 62 SHEET 5 AA2 5 ILE F 164 LEU F 166 1 O ILE F 164 N PHE F 120 SHEET 1 AA3 3 GLU A 22 GLU A 25 0 SHEET 2 AA3 3 ALA A 143 LEU A 147 -1 O THR A 144 N VAL A 24 SHEET 3 AA3 3 VAL A 134 PHE A 136 -1 N PHE A 136 O MET A 145 SHEET 1 AA4 5 ARG A 88 PHE A 89 0 SHEET 2 AA4 5 SER A 47 LYS A 53 -1 N LYS A 53 O ARG A 88 SHEET 3 AA4 5 TYR A 60 LEU A 66 -1 O VAL A 63 N LEU A 50 SHEET 4 AA4 5 LYS A 119 ASP A 123 1 O VAL A 121 N LEU A 62 SHEET 5 AA4 5 ILE A 164 LEU A 166 1 O LEU A 166 N LEU A 122 SHEET 1 AA5 3 GLU B 22 GLU B 25 0 SHEET 2 AA5 3 ALA B 143 LEU B 147 -1 O GLY B 146 N GLU B 22 SHEET 3 AA5 3 VAL B 134 PHE B 136 -1 N VAL B 134 O LEU B 147 SHEET 1 AA6 5 LEU B 87 PHE B 89 0 SHEET 2 AA6 5 SER B 47 ASP B 54 -1 N LYS B 53 O ARG B 88 SHEET 3 AA6 5 TYR B 60 LEU B 66 -1 O VAL B 63 N LEU B 50 SHEET 4 AA6 5 VAL B 118 ASP B 123 1 O VAL B 121 N LEU B 62 SHEET 5 AA6 5 ILE B 164 LEU B 166 1 O ILE B 164 N PHE B 120 SHEET 1 AA7 3 GLU C 22 GLU C 25 0 SHEET 2 AA7 3 ALA C 143 LEU C 147 -1 O GLY C 146 N GLU C 22 SHEET 3 AA7 3 VAL C 134 PHE C 136 -1 N VAL C 134 O LEU C 147 SHEET 1 AA8 5 ARG C 88 PHE C 89 0 SHEET 2 AA8 5 SER C 47 LYS C 53 -1 N LYS C 53 O ARG C 88 SHEET 3 AA8 5 TYR C 60 LEU C 66 -1 O VAL C 63 N LEU C 50 SHEET 4 AA8 5 VAL C 118 ASP C 123 1 O VAL C 121 N LEU C 62 SHEET 5 AA8 5 ILE C 164 LEU C 166 1 O ILE C 164 N PHE C 120 SHEET 1 AA9 3 GLU D 22 GLU D 25 0 SHEET 2 AA9 3 ALA D 143 LEU D 147 -1 O GLY D 146 N GLU D 22 SHEET 3 AA9 3 VAL D 134 PHE D 136 -1 N PHE D 136 O MET D 145 SHEET 1 AB1 5 ARG D 88 PHE D 89 0 SHEET 2 AB1 5 SER D 47 LYS D 53 -1 N LYS D 53 O ARG D 88 SHEET 3 AB1 5 TYR D 60 LEU D 66 -1 O VAL D 63 N LEU D 50 SHEET 4 AB1 5 VAL D 118 ASP D 123 1 O LYS D 119 N LEU D 62 SHEET 5 AB1 5 ILE D 164 LEU D 166 1 O ILE D 164 N PHE D 120 SHEET 1 AB2 3 GLU E 22 GLU E 25 0 SHEET 2 AB2 3 ALA E 143 LEU E 147 -1 O GLY E 146 N GLU E 22 SHEET 3 AB2 3 VAL E 134 PHE E 136 -1 N PHE E 136 O MET E 145 SHEET 1 AB3 5 ARG E 88 PHE E 89 0 SHEET 2 AB3 5 SER E 47 LYS E 53 -1 N LYS E 53 O ARG E 88 SHEET 3 AB3 5 TYR E 60 LEU E 66 -1 O VAL E 63 N LEU E 50 SHEET 4 AB3 5 LYS E 119 ASP E 123 1 O LYS E 119 N LEU E 62 SHEET 5 AB3 5 ILE E 164 LEU E 166 1 O ILE E 164 N PHE E 120 CRYST1 86.802 94.722 165.526 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006041 0.00000