HEADER SIGNALING PROTEIN 07-JAN-23 8HZ2 TITLE TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 6 (TRAF6) N-TERMINAL TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: E3 UBIQUITIN-PROTEIN LIGASE TRAF6,INTERLEUKIN-1 SIGNAL COMPND 5 TRANSDUCER,RING FINGER PROTEIN 85,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 6 TRAF6; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 GENE: TRAF6, RNF85; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TRAF6, ZINC FINGER PROTEIN, UBIQUITIN LIGASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.GUVEN,H.CIFTCI,H.DEMIRCI REVDAT 2 29-MAY-24 8HZ2 1 REMARK REVDAT 1 25-JAN-23 8HZ2 0 JRNL AUTH O.GUVEN,H.CIFTCI,H.DEMIRCI JRNL TITL TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 6 (TRAF6) JRNL TITL 2 N-TERMINAL DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 12052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.354 REMARK 3 R VALUE (WORKING SET) : 0.348 REMARK 3 FREE R VALUE : 0.409 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.9980 - 4.5800 0.94 1152 131 0.3406 0.4084 REMARK 3 2 4.5800 - 3.9500 0.99 1215 136 0.3159 0.3897 REMARK 3 3 3.9500 - 3.5700 1.00 1215 139 0.3316 0.3899 REMARK 3 4 3.5700 - 3.3000 1.00 1229 132 0.3544 0.4205 REMARK 3 5 3.3000 - 3.1000 1.00 1219 137 0.3734 0.4398 REMARK 3 6 3.1000 - 2.9400 1.00 1235 146 0.3696 0.4142 REMARK 3 7 2.9400 - 2.8100 1.00 1212 129 0.3718 0.4063 REMARK 3 8 2.8100 - 2.7000 0.99 1205 127 0.3664 0.4409 REMARK 3 9 2.6900 - 2.6000 0.95 1156 137 0.3757 0.4091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.710 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 50.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 NULL REMARK 3 ANGLE : 0.538 NULL REMARK 3 CHIRALITY : 0.040 366 REMARK 3 PLANARITY : 0.006 468 REMARK 3 DIHEDRAL : 14.337 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5403 13.0131 4.8448 REMARK 3 T TENSOR REMARK 3 T11: 0.4370 T22: 0.2069 REMARK 3 T33: 0.5001 T12: 0.1001 REMARK 3 T13: 0.0581 T23: -0.1822 REMARK 3 L TENSOR REMARK 3 L11: 3.0833 L22: 2.1603 REMARK 3 L33: 4.0399 L12: -0.1864 REMARK 3 L13: 1.9413 L23: 1.3731 REMARK 3 S TENSOR REMARK 3 S11: 0.7521 S12: -0.7289 S13: -0.6354 REMARK 3 S21: 0.8509 S22: 0.3123 S23: 0.5888 REMARK 3 S31: 0.8931 S32: -0.7461 S33: 0.9193 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0024 6.4964 -3.6573 REMARK 3 T TENSOR REMARK 3 T11: 0.5989 T22: 0.7254 REMARK 3 T33: 0.3586 T12: -0.0772 REMARK 3 T13: -0.0515 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4962 L22: 1.8559 REMARK 3 L33: 1.2209 L12: -0.2969 REMARK 3 L13: -0.7742 L23: 0.5178 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: -0.2874 S13: 0.1774 REMARK 3 S21: 0.5098 S22: 0.6196 S23: 0.3678 REMARK 3 S31: -0.4527 S32: -0.6970 S33: 0.1126 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2530 7.3221 -10.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.6481 T22: 0.8551 REMARK 3 T33: 0.5627 T12: -0.2054 REMARK 3 T13: 0.0828 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 2.0365 L22: 5.0583 REMARK 3 L33: 0.8696 L12: 0.4750 REMARK 3 L13: -0.0025 L23: 0.8719 REMARK 3 S TENSOR REMARK 3 S11: -0.6167 S12: -0.0257 S13: -0.0774 REMARK 3 S21: -0.2780 S22: -0.4272 S23: 0.6308 REMARK 3 S31: 0.5531 S32: 0.4237 S33: 0.1383 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2131 9.3775 -10.9462 REMARK 3 T TENSOR REMARK 3 T11: 0.4018 T22: 0.5756 REMARK 3 T33: 0.6744 T12: 0.0505 REMARK 3 T13: -0.0433 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: 1.1741 L22: 4.6010 REMARK 3 L33: 4.3472 L12: 1.0835 REMARK 3 L13: 1.2048 L23: 2.3446 REMARK 3 S TENSOR REMARK 3 S11: 0.2076 S12: -0.1671 S13: -0.9256 REMARK 3 S21: 0.4164 S22: 0.3508 S23: -0.9189 REMARK 3 S31: -0.1809 S32: 0.0583 S33: 0.5353 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8727 13.5952 6.6218 REMARK 3 T TENSOR REMARK 3 T11: 0.4724 T22: 0.6008 REMARK 3 T33: 0.5729 T12: 0.1034 REMARK 3 T13: 0.0900 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.0460 L22: 2.1858 REMARK 3 L33: 0.5090 L12: -0.5635 REMARK 3 L13: -0.2123 L23: 0.8014 REMARK 3 S TENSOR REMARK 3 S11: 0.4351 S12: -0.0098 S13: -0.1644 REMARK 3 S21: 0.1790 S22: -0.3171 S23: 0.8938 REMARK 3 S31: 0.1194 S32: 0.3853 S33: -0.0776 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5788 9.4901 22.7887 REMARK 3 T TENSOR REMARK 3 T11: 0.8964 T22: 0.6660 REMARK 3 T33: 0.4827 T12: 0.1317 REMARK 3 T13: 0.1720 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.1292 L22: 1.9665 REMARK 3 L33: 5.0258 L12: -0.0476 REMARK 3 L13: -0.5784 L23: -2.3660 REMARK 3 S TENSOR REMARK 3 S11: -0.4052 S12: -0.6026 S13: -0.3494 REMARK 3 S21: 0.6987 S22: -0.4985 S23: -0.2515 REMARK 3 S31: 0.1606 S32: -0.3656 S33: -0.1384 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6489 6.6888 18.7742 REMARK 3 T TENSOR REMARK 3 T11: 0.7553 T22: 0.3676 REMARK 3 T33: 1.0123 T12: -0.1112 REMARK 3 T13: -0.0238 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.6813 L22: 3.8740 REMARK 3 L33: 2.7691 L12: 0.2137 REMARK 3 L13: 0.0531 L23: -0.1186 REMARK 3 S TENSOR REMARK 3 S11: 0.3364 S12: -0.0148 S13: 0.0873 REMARK 3 S21: 0.1743 S22: -0.4357 S23: -0.6041 REMARK 3 S31: 0.3088 S32: 0.0107 S33: -0.0674 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7649 -7.5471 27.0604 REMARK 3 T TENSOR REMARK 3 T11: 0.5684 T22: 0.6041 REMARK 3 T33: 0.6330 T12: -0.0161 REMARK 3 T13: 0.0560 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 1.1581 L22: 1.3827 REMARK 3 L33: 2.6387 L12: -1.0592 REMARK 3 L13: -0.2314 L23: -0.8877 REMARK 3 S TENSOR REMARK 3 S11: 0.5518 S12: 0.3761 S13: 0.5626 REMARK 3 S21: -0.2541 S22: 0.2056 S23: 0.6789 REMARK 3 S31: 0.0594 S32: 0.7130 S33: -0.3493 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5688 -15.9872 37.4158 REMARK 3 T TENSOR REMARK 3 T11: 0.4314 T22: 0.6051 REMARK 3 T33: 0.6842 T12: -0.0552 REMARK 3 T13: -0.0056 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.7345 L22: 1.9098 REMARK 3 L33: 2.3276 L12: 1.0389 REMARK 3 L13: -0.5351 L23: 0.7135 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.6447 S13: -1.3590 REMARK 3 S21: -0.3539 S22: -0.1669 S23: 0.2199 REMARK 3 S31: 0.3678 S32: 0.0033 S33: 0.1864 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4009 -27.4693 43.8526 REMARK 3 T TENSOR REMARK 3 T11: 0.5568 T22: 1.0952 REMARK 3 T33: 0.9256 T12: 0.0444 REMARK 3 T13: 0.4330 T23: 0.1894 REMARK 3 L TENSOR REMARK 3 L11: 0.4731 L22: 1.6247 REMARK 3 L33: 0.4903 L12: 0.1552 REMARK 3 L13: 0.0049 L23: 0.0464 REMARK 3 S TENSOR REMARK 3 S11: -0.4505 S12: -0.0093 S13: -1.1065 REMARK 3 S21: 0.0210 S22: -0.3499 S23: 0.3313 REMARK 3 S31: 0.5169 S32: 0.1350 S33: -0.1775 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9468 27.0557 -4.8565 REMARK 3 T TENSOR REMARK 3 T11: 0.3756 T22: 0.2572 REMARK 3 T33: 0.2949 T12: -0.0741 REMARK 3 T13: -0.0416 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.6856 L22: 0.8108 REMARK 3 L33: 2.0286 L12: 0.4091 REMARK 3 L13: 0.2408 L23: -0.5736 REMARK 3 S TENSOR REMARK 3 S11: 0.2429 S12: -0.0653 S13: -0.1436 REMARK 3 S21: -0.1475 S22: -0.2722 S23: -0.0095 REMARK 3 S31: 0.1627 S32: 0.0222 S33: -0.0129 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 154 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6979 53.7697 -16.8764 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.6537 REMARK 3 T33: 1.0700 T12: -0.2689 REMARK 3 T13: -0.6997 T23: -0.6808 REMARK 3 L TENSOR REMARK 3 L11: 1.1825 L22: 0.1988 REMARK 3 L33: 1.0612 L12: -0.0995 REMARK 3 L13: -0.7571 L23: -0.2273 REMARK 3 S TENSOR REMARK 3 S11: 0.2757 S12: -0.7826 S13: -0.0841 REMARK 3 S21: 0.3707 S22: -0.6098 S23: 0.6363 REMARK 3 S31: -0.4841 S32: -0.2305 S33: 0.3300 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 167 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6836 69.5117 -24.3895 REMARK 3 T TENSOR REMARK 3 T11: 1.9020 T22: 2.1129 REMARK 3 T33: 1.6993 T12: 0.3451 REMARK 3 T13: 0.5366 T23: 1.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.1466 L22: 0.1590 REMARK 3 L33: 1.3314 L12: -0.1843 REMARK 3 L13: -0.0105 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: -0.6873 S12: -0.0828 S13: -0.6376 REMARK 3 S21: 0.5666 S22: 0.3318 S23: 1.2284 REMARK 3 S31: -0.0638 S32: 0.6789 S33: 0.2054 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8HZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU PHOTONJET-R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-3000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO 1.171.42.35A REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO 1.171.42.35A REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 5.998 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 3HCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE AND 0.1 M TRIS 8.5, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 424 O HOH B 425 0.45 REMARK 500 O HOH B 410 O HOH B 418 0.93 REMARK 500 O ALA A 92 O HOH A 401 1.33 REMARK 500 O HOH B 403 O HOH B 414 1.34 REMARK 500 CG1 ILE A 98 O HOH A 402 1.36 REMARK 500 NE2 HIS B 177 O HOH B 401 1.57 REMARK 500 CB ILE A 98 O HOH A 402 1.70 REMARK 500 N LYS A 96 O HOH A 401 1.75 REMARK 500 NE2 GLN B 166 O HOH B 402 1.82 REMARK 500 O PRO B 163 O HOH B 402 1.84 REMARK 500 CA PRO B 163 O HOH B 402 1.85 REMARK 500 N ILE A 98 O HOH A 402 1.90 REMARK 500 N GLY A 102 O HOH A 403 1.94 REMARK 500 CA ILE A 98 O HOH A 402 1.95 REMARK 500 CE1 HIS B 177 O HOH B 401 1.96 REMARK 500 NE2 HIS B 177 SG CYS B 182 2.00 REMARK 500 NE2 HIS B 204 SG CYS B 208 2.11 REMARK 500 C PRO B 163 O HOH B 402 2.11 REMARK 500 O PRO B 168 O HOH B 403 2.11 REMARK 500 O HOH B 412 O HOH B 419 2.12 REMARK 500 CB CYS B 182 O HOH B 412 2.12 REMARK 500 CA GLY A 102 O HOH A 403 2.18 REMARK 500 O GLY A 102 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG PRO B 168 O HOH A 403 1665 1.57 REMARK 500 CD LYS A 104 O HOH B 414 1445 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 71 5.63 -69.80 REMARK 500 GLN A 166 25.48 48.41 REMARK 500 PRO A 209 3.15 -67.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 426 DISTANCE = 18.96 ANGSTROMS REMARK 525 HOH B 427 DISTANCE = 26.85 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ZN A 301 REMARK 615 ZN A 302 REMARK 615 ZN A 303 REMARK 615 ZN A 304 REMARK 615 ZN A 305 REMARK 615 ZN B 301 REMARK 615 ZN B 302 REMARK 615 ZN B 303 REMARK 615 ZN B 304 REMARK 615 ZN B 305 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 CYS A 73 SG 108.7 REMARK 620 3 CYS A 90 SG 108.3 114.3 REMARK 620 4 CYS A 93 SG 111.1 108.1 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 85 SG REMARK 620 2 HIS A 87 ND1 127.7 REMARK 620 3 CYS A 105 SG 104.1 122.8 REMARK 620 4 ASP A 108 OD2 96.4 80.4 119.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 134 SG REMARK 620 2 CYS A 139 SG 111.8 REMARK 620 3 HIS A 151 NE2 136.6 108.3 REMARK 620 4 CYS A 155 SG 109.2 111.4 69.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 162 SG REMARK 620 2 CYS A 165 SG 112.8 REMARK 620 3 HIS A 177 NE2 100.8 125.9 REMARK 620 4 CYS A 182 SG 110.5 110.8 94.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 CYS A 192 SG 112.0 REMARK 620 3 HIS A 204 NE2 142.9 71.2 REMARK 620 4 CYS A 208 SG 110.9 112.0 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 70 SG REMARK 620 2 CYS B 73 SG 108.0 REMARK 620 3 CYS B 90 SG 107.3 111.7 REMARK 620 4 CYS B 93 SG 113.5 108.9 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 85 SG REMARK 620 2 HIS B 87 ND1 115.4 REMARK 620 3 CYS B 105 SG 108.9 134.0 REMARK 620 4 ASP B 108 OD2 89.9 79.9 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 134 SG REMARK 620 2 CYS B 139 SG 112.8 REMARK 620 3 HIS B 151 NE2 73.5 159.1 REMARK 620 4 CYS B 155 SG 111.5 115.7 77.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 162 SG REMARK 620 2 CYS B 165 SG 109.0 REMARK 620 3 HIS B 177 NE2 127.2 123.2 REMARK 620 4 CYS B 182 SG 118.8 108.3 53.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 189 SG REMARK 620 2 CYS B 192 SG 111.2 REMARK 620 3 HIS B 204 NE2 162.9 85.9 REMARK 620 4 CYS B 208 SG 113.8 111.8 57.0 REMARK 620 N 1 2 3 DBREF 8HZ2 A 54 210 UNP Q9Y4K3 TRAF6_HUMAN 54 210 DBREF 8HZ2 B 54 210 UNP Q9Y4K3 TRAF6_HUMAN 54 210 SEQRES 1 A 157 GLN GLY TYR ASP VAL GLU PHE ASP PRO PRO LEU GLU SER SEQRES 2 A 157 LYS TYR GLU CYS PRO ILE CYS LEU MET ALA LEU ARG GLU SEQRES 3 A 157 ALA VAL GLN THR PRO CYS GLY HIS ARG PHE CYS LYS ALA SEQRES 4 A 157 CYS ILE ILE LYS SER ILE ARG ASP ALA GLY HIS LYS CYS SEQRES 5 A 157 PRO VAL ASP ASN GLU ILE LEU LEU GLU ASN GLN LEU PHE SEQRES 6 A 157 PRO ASP ASN PHE ALA LYS ARG GLU ILE LEU SER LEU MET SEQRES 7 A 157 VAL LYS CYS PRO ASN GLU GLY CYS LEU HIS LYS MET GLU SEQRES 8 A 157 LEU ARG HIS LEU GLU ASP HIS GLN ALA HIS CYS GLU PHE SEQRES 9 A 157 ALA LEU MET ASP CYS PRO GLN CYS GLN ARG PRO PHE GLN SEQRES 10 A 157 LYS PHE HIS ILE ASN ILE HIS ILE LEU LYS ASP CYS PRO SEQRES 11 A 157 ARG ARG GLN VAL SER CYS ASP ASN CYS ALA ALA SER MET SEQRES 12 A 157 ALA PHE GLU ASP LYS GLU ILE HIS ASP GLN ASN CYS PRO SEQRES 13 A 157 LEU SEQRES 1 B 157 GLN GLY TYR ASP VAL GLU PHE ASP PRO PRO LEU GLU SER SEQRES 2 B 157 LYS TYR GLU CYS PRO ILE CYS LEU MET ALA LEU ARG GLU SEQRES 3 B 157 ALA VAL GLN THR PRO CYS GLY HIS ARG PHE CYS LYS ALA SEQRES 4 B 157 CYS ILE ILE LYS SER ILE ARG ASP ALA GLY HIS LYS CYS SEQRES 5 B 157 PRO VAL ASP ASN GLU ILE LEU LEU GLU ASN GLN LEU PHE SEQRES 6 B 157 PRO ASP ASN PHE ALA LYS ARG GLU ILE LEU SER LEU MET SEQRES 7 B 157 VAL LYS CYS PRO ASN GLU GLY CYS LEU HIS LYS MET GLU SEQRES 8 B 157 LEU ARG HIS LEU GLU ASP HIS GLN ALA HIS CYS GLU PHE SEQRES 9 B 157 ALA LEU MET ASP CYS PRO GLN CYS GLN ARG PRO PHE GLN SEQRES 10 B 157 LYS PHE HIS ILE ASN ILE HIS ILE LEU LYS ASP CYS PRO SEQRES 11 B 157 ARG ARG GLN VAL SER CYS ASP ASN CYS ALA ALA SER MET SEQRES 12 B 157 ALA PHE GLU ASP LYS GLU ILE HIS ASP GLN ASN CYS PRO SEQRES 13 B 157 LEU HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN B 301 1 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HETNAM ZN ZINC ION FORMUL 3 ZN 10(ZN 2+) FORMUL 13 HOH *46(H2 O) HELIX 1 AA1 GLU A 65 GLU A 69 5 5 HELIX 2 AA2 LYS A 91 ALA A 101 1 11 HELIX 3 AA3 ASP A 120 LEU A 128 1 9 HELIX 4 AA4 HIS A 147 ALA A 153 1 7 HELIX 5 AA5 LYS A 171 LYS A 180 1 10 HELIX 6 AA6 ASP A 200 GLN A 206 1 7 HELIX 7 AA7 GLU B 65 GLU B 69 5 5 HELIX 8 AA8 LYS B 91 ALA B 101 1 11 HELIX 9 AA9 ASP B 120 LEU B 128 1 9 HELIX 10 AB1 HIS B 147 GLN B 152 1 6 HELIX 11 AB2 HIS B 173 ASP B 181 1 9 HELIX 12 AB3 ASP B 200 ASN B 207 1 8 SHEET 1 AA1 3 ARG A 88 CYS A 90 0 SHEET 2 AA1 3 ALA A 80 GLN A 82 -1 N VAL A 81 O PHE A 89 SHEET 3 AA1 3 PHE A 118 PRO A 119 -1 O PHE A 118 N GLN A 82 SHEET 1 AA2 2 MET A 131 LYS A 133 0 SHEET 2 AA2 2 LYS A 142 GLU A 144 -1 O MET A 143 N VAL A 132 SHEET 1 AA3 2 LEU A 159 ASP A 161 0 SHEET 2 AA3 2 PRO A 168 GLN A 170 -1 O PHE A 169 N MET A 160 SHEET 1 AA4 2 GLN A 186 VAL A 187 0 SHEET 2 AA4 2 MET A 196 ALA A 197 -1 O MET A 196 N VAL A 187 SHEET 1 AA5 3 GLU B 59 PHE B 60 0 SHEET 2 AA5 3 MET B 131 LYS B 133 -1 O LYS B 133 N GLU B 59 SHEET 3 AA5 3 MET B 143 GLU B 144 -1 O MET B 143 N VAL B 132 SHEET 1 AA6 3 ARG B 88 CYS B 90 0 SHEET 2 AA6 3 ALA B 80 GLN B 82 -1 N VAL B 81 O PHE B 89 SHEET 3 AA6 3 PHE B 118 PRO B 119 -1 O PHE B 118 N GLN B 82 SHEET 1 AA7 2 LEU B 159 ASP B 161 0 SHEET 2 AA7 2 PRO B 168 GLN B 170 -1 O PHE B 169 N MET B 160 SHEET 1 AA8 2 VAL B 187 SER B 188 0 SHEET 2 AA8 2 SER B 195 MET B 196 -1 O MET B 196 N VAL B 187 LINK SG CYS A 70 ZN ZN A 301 1555 1555 2.33 LINK SG CYS A 73 ZN ZN A 301 1555 1555 2.33 LINK SG CYS A 85 ZN ZN A 302 1555 1555 2.30 LINK ND1 HIS A 87 ZN ZN A 302 1555 1555 2.31 LINK SG CYS A 90 ZN ZN A 301 1555 1555 2.33 LINK SG CYS A 93 ZN ZN A 301 1555 1555 2.32 LINK SG CYS A 105 ZN ZN A 302 1555 1555 2.30 LINK OD2 ASP A 108 ZN ZN A 302 1555 1555 1.97 LINK SG CYS A 134 ZN ZN A 303 1555 1555 2.31 LINK SG CYS A 139 ZN ZN A 303 1555 1555 2.32 LINK NE2 HIS A 151 ZN ZN A 303 1555 1555 2.09 LINK SG CYS A 155 ZN ZN A 303 1555 1555 2.31 LINK SG CYS A 162 ZN ZN A 304 1555 1555 2.32 LINK SG CYS A 165 ZN ZN A 304 1555 1555 2.32 LINK NE2 HIS A 177 ZN ZN A 304 1555 1555 2.09 LINK SG CYS A 182 ZN ZN A 304 1555 1555 2.32 LINK SG CYS A 189 ZN ZN A 305 1555 1555 2.32 LINK SG CYS A 192 ZN ZN A 305 1555 1555 2.32 LINK NE2 HIS A 204 ZN ZN A 305 1555 1555 2.09 LINK SG CYS A 208 ZN ZN A 305 1555 1555 2.32 LINK SG CYS B 70 ZN ZN B 301 1555 1555 2.33 LINK SG CYS B 73 ZN ZN B 301 1555 1555 2.33 LINK SG CYS B 85 ZN ZN B 302 1555 1555 2.30 LINK ND1 HIS B 87 ZN ZN B 302 1555 1555 2.30 LINK SG CYS B 90 ZN ZN B 301 1555 1555 2.33 LINK SG CYS B 93 ZN ZN B 301 1555 1555 2.34 LINK SG CYS B 105 ZN ZN B 302 1555 1555 2.30 LINK OD2 ASP B 108 ZN ZN B 302 1555 1555 2.22 LINK SG CYS B 134 ZN ZN B 303 1555 1555 2.32 LINK SG CYS B 139 ZN ZN B 303 1555 1555 2.32 LINK NE2 HIS B 151 ZN ZN B 303 1555 1555 2.06 LINK SG CYS B 155 ZN ZN B 303 1555 1555 2.32 LINK SG CYS B 162 ZN ZN B 304 1555 1555 2.33 LINK SG CYS B 165 ZN ZN B 304 1555 1555 2.31 LINK NE2 HIS B 177 ZN ZN B 304 1555 1555 2.09 LINK SG CYS B 182 ZN ZN B 304 1555 1555 2.33 LINK SG CYS B 189 ZN ZN B 305 1555 1555 2.32 LINK SG CYS B 192 ZN ZN B 305 1555 1555 2.32 LINK NE2 HIS B 204 ZN ZN B 305 1555 1555 2.08 LINK SG CYS B 208 ZN ZN B 305 1555 1555 2.32 CISPEP 1 ASP B 61 PRO B 62 0 1.96 CRYST1 45.885 51.705 54.300 91.04 112.15 108.43 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021794 0.007262 0.010131 0.00000 SCALE2 0.000000 0.020386 0.003226 0.00000 SCALE3 0.000000 0.000000 0.020131 0.00000