data_8HZD # _entry.id 8HZD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8HZD pdb_00008hzd 10.2210/pdb8hzd/pdb WWPDB D_1300034633 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-06-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8HZD _pdbx_database_status.recvd_initial_deposition_date 2023-01-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email aimingren@zju.edu.cn _pdbx_contact_author.name_first Aiming _pdbx_contact_author.name_last Ren _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5420-4899 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Song, Q.Q.' 1 ? 'Ren, A.M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-024-01633-1 _citation.pdbx_database_id_PubMed 38816645 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, K.' 1 ? primary 'Song, Q.' 2 0000-0003-1990-4096 primary 'Fang, M.' 3 ? primary 'Yao, D.' 4 ? primary 'Shen, X.' 5 0009-0007-0384-2755 primary 'Xu, X.' 6 ? primary 'Chen, X.' 7 0000-0002-8475-332X primary 'Zhu, L.' 8 0000-0002-0398-7213 primary 'Yang, Y.' 9 0000-0001-7896-1184 primary 'Ren, A.' 10 0000-0002-5420-4899 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (36-MER)' 11620.019 1 ? ? ? ? 2 polymer man 'RNA (36-MER)' 11699.999 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 7 ? ? ? ? 4 non-polymer syn ;4-[(~{E})-2-[(4~{Z})-4-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-1-methyl-5-oxidanylidene-imidazol-2-yl]ethenyl]benzenecarbonitrile ; 365.333 2 ? ? ? ? 5 water nat water 18.015 85 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAAGAUUGUAAACAUGCCGAAAGGCAGACACUUCC GGAAGAUUGUAAACAUGCCGAAAGGCAGACACUUCC A ? 2 polyribonucleotide no yes '(GDP)GAAGAUUGUAAACAUGCCGAAAGGCAGACACUUCC' GGAAGAUUGUAAACAUGCCGAAAGGCAGACACUUCC B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 ;4-[(~{E})-2-[(4~{Z})-4-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-1-methyl-5-oxidanylidene-imidazol-2-yl]ethenyl]benzenecarbonitrile ; O2I 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 A n 1 5 G n 1 6 A n 1 7 U n 1 8 U n 1 9 G n 1 10 U n 1 11 A n 1 12 A n 1 13 A n 1 14 C n 1 15 A n 1 16 U n 1 17 G n 1 18 C n 1 19 C n 1 20 G n 1 21 A n 1 22 A n 1 23 A n 1 24 G n 1 25 G n 1 26 C n 1 27 A n 1 28 G n 1 29 A n 1 30 C n 1 31 A n 1 32 C n 1 33 U n 1 34 U n 1 35 C n 1 36 C n 2 1 GDP n 2 2 G n 2 3 A n 2 4 A n 2 5 G n 2 6 A n 2 7 U n 2 8 U n 2 9 G n 2 10 U n 2 11 A n 2 12 A n 2 13 A n 2 14 C n 2 15 A n 2 16 U n 2 17 G n 2 18 C n 2 19 C n 2 20 G n 2 21 A n 2 22 A n 2 23 A n 2 24 G n 2 25 G n 2 26 C n 2 27 A n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 C n 2 33 U n 2 34 U n 2 35 C n 2 36 C n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 36 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'in vitro transcription vector pT7-TP(deltai)' 905931 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 36 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'in vitro transcription vector pT7-TP(deltai)' 905931 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 O2I non-polymer . ;4-[(~{E})-2-[(4~{Z})-4-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-1-methyl-5-oxidanylidene-imidazol-2-yl]ethenyl]benzenecarbonitrile ; ? 'C20 H13 F2 N3 O2' 365.333 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 U 16 16 16 U U A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 C 26 26 26 C C A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 A 29 29 29 A A A . n A 1 30 C 30 30 30 C C A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 U 33 33 33 U U A . n A 1 34 U 34 34 34 U U A . n A 1 35 C 35 35 35 C C A . n A 1 36 C 36 36 36 C C A . n B 2 1 GDP 1 1 1 GDP GDP B . n B 2 2 G 2 2 2 G G B . n B 2 3 A 3 3 3 A A B . n B 2 4 A 4 4 4 A A B . n B 2 5 G 5 5 5 G G B . n B 2 6 A 6 6 6 A A B . n B 2 7 U 7 7 7 U U B . n B 2 8 U 8 8 8 U U B . n B 2 9 G 9 9 9 G G B . n B 2 10 U 10 10 10 U U B . n B 2 11 A 11 11 11 A A B . n B 2 12 A 12 12 12 A A B . n B 2 13 A 13 13 13 A A B . n B 2 14 C 14 14 14 C C B . n B 2 15 A 15 15 15 A A B . n B 2 16 U 16 16 16 U U B . n B 2 17 G 17 17 17 G G B . n B 2 18 C 18 18 18 C C B . n B 2 19 C 19 19 19 C C B . n B 2 20 G 20 20 20 G G B . n B 2 21 A 21 21 21 A A B . n B 2 22 A 22 22 22 A A B . n B 2 23 A 23 23 23 A A B . n B 2 24 G 24 24 24 G G B . n B 2 25 G 25 25 25 G G B . n B 2 26 C 26 26 26 C C B . n B 2 27 A 27 27 27 A A B . n B 2 28 G 28 28 28 G G B . n B 2 29 A 29 29 29 A A B . n B 2 30 C 30 30 30 C C B . n B 2 31 A 31 31 31 A A B . n B 2 32 C 32 32 32 C C B . n B 2 33 U 33 33 33 U U B . n B 2 34 U 34 34 34 U U B . n B 2 35 C 35 35 35 C C B . n B 2 36 C 36 36 36 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 1 MG MG A . D 3 MG 1 102 2 MG MG A . E 3 MG 1 103 3 MG MG A . F 4 O2I 1 104 1 O2I LIG A . G 3 MG 1 101 4 MG MG B . H 3 MG 1 102 5 MG MG B . I 3 MG 1 103 6 MG MG B . J 3 MG 1 104 7 MG MG B . K 4 O2I 1 105 2 O2I LIG B . L 5 HOH 1 201 4 HOH HOH A . L 5 HOH 2 202 55 HOH HOH A . L 5 HOH 3 203 54 HOH HOH A . L 5 HOH 4 204 14 HOH HOH A . L 5 HOH 5 205 12 HOH HOH A . L 5 HOH 6 206 53 HOH HOH A . L 5 HOH 7 207 6 HOH HOH A . L 5 HOH 8 208 16 HOH HOH A . L 5 HOH 9 209 70 HOH HOH A . L 5 HOH 10 210 67 HOH HOH A . L 5 HOH 11 211 72 HOH HOH A . L 5 HOH 12 212 7 HOH HOH A . L 5 HOH 13 213 1 HOH HOH A . L 5 HOH 14 214 11 HOH HOH A . L 5 HOH 15 215 37 HOH HOH A . L 5 HOH 16 216 19 HOH HOH A . L 5 HOH 17 217 23 HOH HOH A . L 5 HOH 18 218 13 HOH HOH A . L 5 HOH 19 219 9 HOH HOH A . L 5 HOH 20 220 36 HOH HOH A . L 5 HOH 21 221 2 HOH HOH A . L 5 HOH 22 222 41 HOH HOH A . L 5 HOH 23 223 31 HOH HOH A . L 5 HOH 24 224 64 HOH HOH A . L 5 HOH 25 225 3 HOH HOH A . L 5 HOH 26 226 65 HOH HOH A . L 5 HOH 27 227 79 HOH HOH A . L 5 HOH 28 228 62 HOH HOH A . L 5 HOH 29 229 5 HOH HOH A . L 5 HOH 30 230 77 HOH HOH A . L 5 HOH 31 231 21 HOH HOH A . L 5 HOH 32 232 18 HOH HOH A . L 5 HOH 33 233 33 HOH HOH A . L 5 HOH 34 234 38 HOH HOH A . L 5 HOH 35 235 47 HOH HOH A . L 5 HOH 36 236 22 HOH HOH A . L 5 HOH 37 237 63 HOH HOH A . L 5 HOH 38 238 86 HOH HOH A . L 5 HOH 39 239 52 HOH HOH A . L 5 HOH 40 240 15 HOH HOH A . L 5 HOH 41 241 8 HOH HOH A . L 5 HOH 42 242 17 HOH HOH A . L 5 HOH 43 243 10 HOH HOH A . M 5 HOH 1 201 80 HOH HOH B . M 5 HOH 2 202 42 HOH HOH B . M 5 HOH 3 203 69 HOH HOH B . M 5 HOH 4 204 27 HOH HOH B . M 5 HOH 5 205 82 HOH HOH B . M 5 HOH 6 206 84 HOH HOH B . M 5 HOH 7 207 61 HOH HOH B . M 5 HOH 8 208 25 HOH HOH B . M 5 HOH 9 209 56 HOH HOH B . M 5 HOH 10 210 46 HOH HOH B . M 5 HOH 11 211 51 HOH HOH B . M 5 HOH 12 212 24 HOH HOH B . M 5 HOH 13 213 81 HOH HOH B . M 5 HOH 14 214 74 HOH HOH B . M 5 HOH 15 215 28 HOH HOH B . M 5 HOH 16 216 43 HOH HOH B . M 5 HOH 17 217 44 HOH HOH B . M 5 HOH 18 218 68 HOH HOH B . M 5 HOH 19 219 71 HOH HOH B . M 5 HOH 20 220 26 HOH HOH B . M 5 HOH 21 221 48 HOH HOH B . M 5 HOH 22 222 50 HOH HOH B . M 5 HOH 23 223 29 HOH HOH B . M 5 HOH 24 224 78 HOH HOH B . M 5 HOH 25 225 32 HOH HOH B . M 5 HOH 26 226 58 HOH HOH B . M 5 HOH 27 227 40 HOH HOH B . M 5 HOH 28 228 83 HOH HOH B . M 5 HOH 29 229 34 HOH HOH B . M 5 HOH 30 230 35 HOH HOH B . M 5 HOH 31 231 66 HOH HOH B . M 5 HOH 32 232 85 HOH HOH B . M 5 HOH 33 233 30 HOH HOH B . M 5 HOH 34 234 57 HOH HOH B . M 5 HOH 35 235 76 HOH HOH B . M 5 HOH 36 236 49 HOH HOH B . M 5 HOH 37 237 75 HOH HOH B . M 5 HOH 38 238 20 HOH HOH B . M 5 HOH 39 239 60 HOH HOH B . M 5 HOH 40 240 39 HOH HOH B . M 5 HOH 41 241 59 HOH HOH B . M 5 HOH 42 242 45 HOH HOH B . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 0 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id C _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 36 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id "C3'" _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id C _pdbx_unobs_or_zero_occ_atoms.label_seq_id 36 _pdbx_unobs_or_zero_occ_atoms.label_atom_id "C3'" # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.18.2_3874: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 113.81 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8HZD _cell.details ? _cell.formula_units_Z ? _cell.length_a 77.494 _cell.length_a_esd ? _cell.length_b 46.461 _cell.length_b_esd ? _cell.length_c 56.251 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8HZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8HZD _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M Magnesium Chloride, 0.1 M HEPES pH7.5, 30%(w/v) PEGmm550, 0.001 M GSH' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-11-22 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.102 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.102 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8HZD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.87 _reflns.d_resolution_low 38.86 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 14913 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.065 _reflns.pdbx_Rpim_I_all 0.026 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.87 _reflns_shell.d_res_low 1.97 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3566 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.713 _reflns_shell.pdbx_Rpim_I_all 0.279 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.883 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.648 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8HZD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.87 _refine.ls_d_res_low 28.16 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14913 _refine.ls_number_reflns_R_free 755 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.73 _refine.ls_percent_reflns_R_free 5.06 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2130 _refine.ls_R_factor_R_free 0.2592 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2106 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 8HZE _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 34.50 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.31 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.87 _refine_hist.d_res_low 28.16 _refine_hist.number_atoms_solvent 85 _refine_hist.number_atoms_total 1697 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1551 _refine_hist.pdbx_number_atoms_ligand 61 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1794 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.030 ? 2784 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 11.399 ? 865 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 359 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 80 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.87 2.01 . . 138 2905 99.00 . . . . 0.3086 . . . . . . . . . . . 0.4048 'X-RAY DIFFRACTION' 2.01 2.21 . . 160 2908 100.00 . . . . 0.2902 . . . . . . . . . . . 0.3280 'X-RAY DIFFRACTION' 2.21 2.53 . . 145 2464 85.00 . . . . 0.2899 . . . . . . . . . . . 0.3256 'X-RAY DIFFRACTION' 2.53 3.19 . . 174 2898 100.00 . . . . 0.2454 . . . . . . . . . . . 0.3082 'X-RAY DIFFRACTION' 3.19 28.16 . . 138 2983 99.00 . . . . 0.1616 . . . . . . . . . . . 0.1913 # _struct.entry_id 8HZD _struct.title 'A new fluorescent RNA aptamer bound with N618' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8HZD _struct_keywords.text 'fluorescent RNA aptamer, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 4 ? L N N 5 ? M N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8HZD 8HZD ? 1 ? 1 2 PDB 8HZD 8HZD ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8HZD A 1 ? 36 ? 8HZD 1 ? 36 ? 1 36 2 2 8HZD B 1 ? 36 ? 8HZD 1 ? 36 ? 1 36 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2100 ? 1 MORE -61 ? 1 'SSA (A^2)' 11180 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GDP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GDP 1 B G 2 1_555 ? ? ? ? ? ? ? 1.563 ? ? metalc1 metalc ? ? A G 20 OP2 ? ? ? 1_555 D MG . MG ? ? A G 20 A MG 102 1_555 ? ? ? ? ? ? ? 1.934 ? ? metalc2 metalc ? ? A C 36 "O3'" ? ? ? 1_555 E MG . MG ? ? A C 36 A MG 103 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc3 metalc ? ? A C 36 "O2'" ? ? ? 1_555 E MG . MG ? ? A C 36 A MG 103 1_555 ? ? ? ? ? ? ? 1.873 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 101 A HOH 205 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 101 A HOH 207 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 101 A HOH 212 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 101 A HOH 220 1_555 ? ? ? ? ? ? ? 2.007 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 101 A HOH 229 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 101 A HOH 241 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 216 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 231 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 232 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 102 A HOH 236 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 102 B HOH 238 4_455 ? ? ? ? ? ? ? 1.920 ? ? metalc15 metalc ? ? L HOH . O ? ? ? 1_556 J MG . MG ? ? A HOH 209 B MG 104 1_555 ? ? ? ? ? ? ? 2.144 ? ? metalc16 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 223 B MG 101 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc17 metalc ? ? L HOH . O ? ? ? 1_555 G MG . MG ? ? A HOH 233 B MG 101 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc18 metalc ? ? B C 30 OP2 ? ? ? 1_555 J MG . MG ? ? B C 30 B MG 104 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc19 metalc ? ? B A 31 OP2 ? ? ? 1_555 J MG . MG ? ? B A 31 B MG 104 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc20 metalc ? ? B C 36 "O3'" ? ? ? 1_555 H MG . MG ? ? B C 36 B MG 102 1_555 ? ? ? ? ? ? ? 2.606 ? ? metalc21 metalc ? ? B C 36 "O2'" ? ? ? 1_555 H MG . MG ? ? B C 36 B MG 102 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc22 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 225 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc23 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 233 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc24 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 239 1_555 ? ? ? ? ? ? ? 1.939 ? ? metalc25 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 101 B HOH 241 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc26 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 214 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc27 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 103 B HOH 237 1_555 ? ? ? ? ? ? ? 1.953 ? ? metalc28 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 104 B HOH 219 1_555 ? ? ? ? ? ? ? 2.106 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 1 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 1 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 1 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 3 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 3 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 33 N3 ? ? A A 4 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 33 O4 ? ? A A 4 A U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 12 N1 ? ? A G 5 A A 12 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog12 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 12 N6 ? ? A G 5 A A 12 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 5 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 5 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 5 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N6 ? ? ? 1_555 A A 13 N1 ? ? A A 6 A A 13 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog17 hydrog ? ? A A 6 N7 ? ? ? 1_555 A A 13 N6 ? ? A A 6 A A 13 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog18 hydrog ? ? A A 6 N1 ? ? ? 1_555 A A 31 N6 ? ? A A 6 A A 31 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog19 hydrog ? ? A A 6 N6 ? ? ? 1_555 A A 31 N1 ? ? A A 6 A A 31 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 29 N7 ? ? A U 8 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 29 N6 ? ? A U 8 A A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 33 O2 ? ? A A 11 A U 33 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog23 hydrog ? ? A C 14 N3 ? ? ? 1_555 A A 29 N6 ? ? A C 14 A A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A A 15 N7 ? ? ? 1_555 A G 28 N2 ? ? A A 15 A G 28 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog25 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 27 N1 ? ? A U 16 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 27 N6 ? ? A U 16 A A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 20 N2 ? ? ? 1_555 A A 23 N7 ? ? A G 20 A A 23 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? B GDP 1 N1 ? ? ? 1_555 B C 36 N3 ? ? B GDP 1 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B GDP 1 N2 ? ? ? 1_555 B C 36 O2 ? ? B GDP 1 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B GDP 1 O6 ? ? ? 1_555 B C 36 N4 ? ? B GDP 1 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 35 N3 ? ? B G 2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 35 O2 ? ? B G 2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 35 N4 ? ? B G 2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 34 N3 ? ? B A 3 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 34 O4 ? ? B A 3 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 33 N3 ? ? B A 4 B U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 33 O4 ? ? B A 4 B U 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 5 N2 ? ? ? 1_555 B A 12 N1 ? ? B G 5 B A 12 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? B G 5 N3 ? ? ? 1_555 B A 12 N6 ? ? B G 5 B A 12 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog49 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 5 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 5 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 5 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B A 6 N6 ? ? ? 1_555 B A 13 N1 ? ? B A 6 B A 13 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog53 hydrog ? ? B A 6 N7 ? ? ? 1_555 B A 13 N6 ? ? B A 6 B A 13 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog54 hydrog ? ? B A 6 N1 ? ? ? 1_555 B A 31 N6 ? ? B A 6 B A 31 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog55 hydrog ? ? B A 6 N6 ? ? ? 1_555 B A 31 N1 ? ? B A 6 B A 31 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog56 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 29 N7 ? ? B U 8 B A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? B U 8 O2 ? ? ? 1_555 B A 29 N6 ? ? B U 8 B A 29 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog58 hydrog ? ? B A 11 N6 ? ? ? 1_555 B U 33 O2 ? ? B A 11 B U 33 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog59 hydrog ? ? B C 14 N3 ? ? ? 1_555 B A 29 N6 ? ? B C 14 B A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog60 hydrog ? ? B A 15 N6 ? ? ? 1_555 B G 28 N3 ? ? B A 15 B G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog61 hydrog ? ? B A 15 N7 ? ? ? 1_555 B G 28 N2 ? ? B A 15 B G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog62 hydrog ? ? B U 16 N3 ? ? ? 1_555 B A 27 N1 ? ? B U 16 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B U 16 O4 ? ? ? 1_555 B A 27 N6 ? ? B U 16 B A 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 26 N3 ? ? B G 17 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 26 O2 ? ? B G 17 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 26 N4 ? ? B G 17 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B C 18 N3 ? ? ? 1_555 B G 25 N1 ? ? B C 18 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 18 N4 ? ? ? 1_555 B G 25 O6 ? ? B C 18 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 25 N2 ? ? B C 18 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 19 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 19 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 19 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B G 20 N2 ? ? ? 1_555 B A 23 N7 ? ? B G 20 B A 23 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 20 ? A G 20 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 216 ? 1_555 82.7 ? 2 OP2 ? A G 20 ? A G 20 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 231 ? 1_555 89.5 ? 3 O ? L HOH . ? A HOH 216 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 231 ? 1_555 70.9 ? 4 OP2 ? A G 20 ? A G 20 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 232 ? 1_555 98.8 ? 5 O ? L HOH . ? A HOH 216 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 232 ? 1_555 90.9 ? 6 O ? L HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 232 ? 1_555 158.9 ? 7 OP2 ? A G 20 ? A G 20 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 236 ? 1_555 99.9 ? 8 O ? L HOH . ? A HOH 216 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 236 ? 1_555 168.6 ? 9 O ? L HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 236 ? 1_555 98.0 ? 10 O ? L HOH . ? A HOH 232 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? L HOH . ? A HOH 236 ? 1_555 99.6 ? 11 OP2 ? A G 20 ? A G 20 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 238 ? 4_455 163.1 ? 12 O ? L HOH . ? A HOH 216 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 238 ? 4_455 80.5 ? 13 O ? L HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 238 ? 4_455 82.9 ? 14 O ? L HOH . ? A HOH 232 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 238 ? 4_455 83.8 ? 15 O ? L HOH . ? A HOH 236 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? M HOH . ? B HOH 238 ? 4_455 96.1 ? 16 "O3'" ? A C 36 ? A C 36 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 "O2'" ? A C 36 ? A C 36 ? 1_555 85.0 ? 17 O ? L HOH . ? A HOH 205 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 207 ? 1_555 167.3 ? 18 O ? L HOH . ? A HOH 205 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 212 ? 1_555 76.1 ? 19 O ? L HOH . ? A HOH 207 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 212 ? 1_555 92.7 ? 20 O ? L HOH . ? A HOH 205 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 220 ? 1_555 95.7 ? 21 O ? L HOH . ? A HOH 207 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 220 ? 1_555 96.3 ? 22 O ? L HOH . ? A HOH 212 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 220 ? 1_555 167.1 ? 23 O ? L HOH . ? A HOH 205 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 84.3 ? 24 O ? L HOH . ? A HOH 207 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 99.6 ? 25 O ? L HOH . ? A HOH 212 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 79.3 ? 26 O ? L HOH . ? A HOH 220 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 90.0 ? 27 O ? L HOH . ? A HOH 205 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 241 ? 1_555 85.1 ? 28 O ? L HOH . ? A HOH 207 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 241 ? 1_555 88.6 ? 29 O ? L HOH . ? A HOH 212 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 241 ? 1_555 87.5 ? 30 O ? L HOH . ? A HOH 220 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 241 ? 1_555 102.0 ? 31 O ? L HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? L HOH . ? A HOH 241 ? 1_555 164.7 ? 32 O ? L HOH . ? A HOH 209 ? 1_556 MG ? J MG . ? B MG 104 ? 1_555 OP2 ? B C 30 ? B C 30 ? 1_555 97.1 ? 33 O ? L HOH . ? A HOH 209 ? 1_556 MG ? J MG . ? B MG 104 ? 1_555 OP2 ? B A 31 ? B A 31 ? 1_555 103.5 ? 34 OP2 ? B C 30 ? B C 30 ? 1_555 MG ? J MG . ? B MG 104 ? 1_555 OP2 ? B A 31 ? B A 31 ? 1_555 110.3 ? 35 O ? L HOH . ? A HOH 209 ? 1_556 MG ? J MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 219 ? 1_555 83.0 ? 36 OP2 ? B C 30 ? B C 30 ? 1_555 MG ? J MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 219 ? 1_555 80.9 ? 37 OP2 ? B A 31 ? B A 31 ? 1_555 MG ? J MG . ? B MG 104 ? 1_555 O ? M HOH . ? B HOH 219 ? 1_555 165.8 ? 38 O ? L HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? L HOH . ? A HOH 233 ? 1_555 87.9 ? 39 O ? L HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 225 ? 1_555 93.6 ? 40 O ? L HOH . ? A HOH 233 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 225 ? 1_555 84.7 ? 41 O ? L HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 233 ? 1_555 172.2 ? 42 O ? L HOH . ? A HOH 233 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 233 ? 1_555 84.8 ? 43 O ? M HOH . ? B HOH 225 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 233 ? 1_555 83.0 ? 44 O ? L HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 111.8 ? 45 O ? L HOH . ? A HOH 233 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 157.8 ? 46 O ? M HOH . ? B HOH 225 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 83.9 ? 47 O ? M HOH . ? B HOH 233 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 239 ? 1_555 74.9 ? 48 O ? L HOH . ? A HOH 223 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 241 ? 1_555 90.8 ? 49 O ? L HOH . ? A HOH 233 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 241 ? 1_555 91.9 ? 50 O ? M HOH . ? B HOH 225 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 241 ? 1_555 174.3 ? 51 O ? M HOH . ? B HOH 233 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 241 ? 1_555 92.2 ? 52 O ? M HOH . ? B HOH 239 ? 1_555 MG ? G MG . ? B MG 101 ? 1_555 O ? M HOH . ? B HOH 241 ? 1_555 97.8 ? 53 "O3'" ? B C 36 ? B C 36 ? 1_555 MG ? H MG . ? B MG 102 ? 1_555 "O2'" ? B C 36 ? B C 36 ? 1_555 71.5 ? 54 O ? M HOH . ? B HOH 214 ? 1_555 MG ? I MG . ? B MG 103 ? 1_555 O ? M HOH . ? B HOH 237 ? 1_555 67.6 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A G 9 ? ? O A HOH 201 ? ? 1.95 2 1 OP1 A C 18 ? ? O A HOH 202 ? ? 2.13 3 1 O A HOH 201 ? ? O A HOH 226 ? ? 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 GDP _pdbx_validate_rmsd_angle.auth_seq_id_1 1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 GDP _pdbx_validate_rmsd_angle.auth_seq_id_2 1 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 P _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 104.68 _pdbx_validate_rmsd_angle.angle_target_value 119.70 _pdbx_validate_rmsd_angle.angle_deviation -15.02 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_entry_details.entry_id 8HZD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GDP PB P N N 111 GDP O1B O N N 112 GDP O2B O N N 113 GDP O3B O N N 114 GDP O3A O N N 115 GDP PA P N N 116 GDP O1A O N N 117 GDP O2A O N N 118 GDP "O5'" O N N 119 GDP "C5'" C N N 120 GDP "C4'" C N R 121 GDP "O4'" O N N 122 GDP "C3'" C N S 123 GDP "O3'" O N N 124 GDP "C2'" C N R 125 GDP "O2'" O N N 126 GDP "C1'" C N R 127 GDP N9 N Y N 128 GDP C8 C Y N 129 GDP N7 N Y N 130 GDP C5 C Y N 131 GDP C6 C N N 132 GDP O6 O N N 133 GDP N1 N N N 134 GDP C2 C N N 135 GDP N2 N N N 136 GDP N3 N N N 137 GDP C4 C Y N 138 GDP HOB2 H N N 139 GDP HOB3 H N N 140 GDP HOA2 H N N 141 GDP "H5'" H N N 142 GDP "H5''" H N N 143 GDP "H4'" H N N 144 GDP "H3'" H N N 145 GDP "HO3'" H N N 146 GDP "H2'" H N N 147 GDP "HO2'" H N N 148 GDP "H1'" H N N 149 GDP H8 H N N 150 GDP HN1 H N N 151 GDP HN21 H N N 152 GDP HN22 H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 MG MG MG N N 157 O2I C10 C Y N 158 O2I C13 C Y N 159 O2I C15 C Y N 160 O2I C20 C Y N 161 O2I C21 C Y N 162 O2I C22 C Y N 163 O2I C24 C Y N 164 O2I C01 C N N 165 O2I C02 C N N 166 O2I C03 C N N 167 O2I C04 C N N 168 O2I C07 C N N 169 O2I C09 C N N 170 O2I C11 C Y N 171 O2I C12 C Y N 172 O2I C14 C Y N 173 O2I C19 C Y N 174 O2I C23 C Y N 175 O2I C25 C N N 176 O2I C27 C N N 177 O2I F16 F N N 178 O2I F17 F N N 179 O2I N05 N N N 180 O2I N06 N N N 181 O2I N26 N N N 182 O2I O08 O N N 183 O2I O18 O N N 184 O2I H1 H N N 185 O2I H2 H N N 186 O2I H3 H N N 187 O2I H5 H N N 188 O2I H6 H N N 189 O2I H7 H N N 190 O2I H8 H N N 191 O2I H10 H N N 192 O2I H11 H N N 193 O2I H12 H N N 194 O2I H13 H N N 195 O2I H14 H N N 196 O2I H15 H N N 197 U OP3 O N N 198 U P P N N 199 U OP1 O N N 200 U OP2 O N N 201 U "O5'" O N N 202 U "C5'" C N N 203 U "C4'" C N R 204 U "O4'" O N N 205 U "C3'" C N S 206 U "O3'" O N N 207 U "C2'" C N R 208 U "O2'" O N N 209 U "C1'" C N R 210 U N1 N N N 211 U C2 C N N 212 U O2 O N N 213 U N3 N N N 214 U C4 C N N 215 U O4 O N N 216 U C5 C N N 217 U C6 C N N 218 U HOP3 H N N 219 U HOP2 H N N 220 U "H5'" H N N 221 U "H5''" H N N 222 U "H4'" H N N 223 U "H3'" H N N 224 U "HO3'" H N N 225 U "H2'" H N N 226 U "HO2'" H N N 227 U "H1'" H N N 228 U H3 H N N 229 U H5 H N N 230 U H6 H N N 231 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GDP PB O1B doub N N 116 GDP PB O2B sing N N 117 GDP PB O3B sing N N 118 GDP PB O3A sing N N 119 GDP O2B HOB2 sing N N 120 GDP O3B HOB3 sing N N 121 GDP O3A PA sing N N 122 GDP PA O1A doub N N 123 GDP PA O2A sing N N 124 GDP PA "O5'" sing N N 125 GDP O2A HOA2 sing N N 126 GDP "O5'" "C5'" sing N N 127 GDP "C5'" "C4'" sing N N 128 GDP "C5'" "H5'" sing N N 129 GDP "C5'" "H5''" sing N N 130 GDP "C4'" "O4'" sing N N 131 GDP "C4'" "C3'" sing N N 132 GDP "C4'" "H4'" sing N N 133 GDP "O4'" "C1'" sing N N 134 GDP "C3'" "O3'" sing N N 135 GDP "C3'" "C2'" sing N N 136 GDP "C3'" "H3'" sing N N 137 GDP "O3'" "HO3'" sing N N 138 GDP "C2'" "O2'" sing N N 139 GDP "C2'" "C1'" sing N N 140 GDP "C2'" "H2'" sing N N 141 GDP "O2'" "HO2'" sing N N 142 GDP "C1'" N9 sing N N 143 GDP "C1'" "H1'" sing N N 144 GDP N9 C8 sing Y N 145 GDP N9 C4 sing Y N 146 GDP C8 N7 doub Y N 147 GDP C8 H8 sing N N 148 GDP N7 C5 sing Y N 149 GDP C5 C6 sing N N 150 GDP C5 C4 doub Y N 151 GDP C6 O6 doub N N 152 GDP C6 N1 sing N N 153 GDP N1 C2 sing N N 154 GDP N1 HN1 sing N N 155 GDP C2 N2 sing N N 156 GDP C2 N3 doub N N 157 GDP N2 HN21 sing N N 158 GDP N2 HN22 sing N N 159 GDP N3 C4 sing N N 160 HOH O H1 sing N N 161 HOH O H2 sing N N 162 O2I F17 C13 sing N N 163 O2I C13 C11 doub Y N 164 O2I C13 C15 sing Y N 165 O2I C11 C10 sing Y N 166 O2I O18 C15 sing N N 167 O2I C15 C14 doub Y N 168 O2I C10 C09 sing N N 169 O2I C10 C12 doub Y N 170 O2I C09 C03 doub N Z 171 O2I C14 C12 sing Y N 172 O2I C14 F16 sing N N 173 O2I O08 C04 doub N N 174 O2I C03 C04 sing N N 175 O2I C03 N05 sing N N 176 O2I C04 N06 sing N N 177 O2I N05 C02 doub N N 178 O2I N06 C07 sing N N 179 O2I N06 C02 sing N N 180 O2I C02 C01 sing N N 181 O2I C27 C01 doub N E 182 O2I C27 C21 sing N N 183 O2I C21 C23 doub Y N 184 O2I C21 C19 sing Y N 185 O2I C23 C24 sing Y N 186 O2I C19 C20 doub Y N 187 O2I C24 C22 doub Y N 188 O2I C20 C22 sing Y N 189 O2I C22 C25 sing N N 190 O2I C25 N26 trip N N 191 O2I C20 H1 sing N N 192 O2I C24 H2 sing N N 193 O2I C01 H3 sing N N 194 O2I C07 H5 sing N N 195 O2I C07 H6 sing N N 196 O2I C07 H7 sing N N 197 O2I C09 H8 sing N N 198 O2I C11 H10 sing N N 199 O2I C12 H11 sing N N 200 O2I C19 H12 sing N N 201 O2I C23 H13 sing N N 202 O2I C27 H14 sing N N 203 O2I O18 H15 sing N N 204 U OP3 P sing N N 205 U OP3 HOP3 sing N N 206 U P OP1 doub N N 207 U P OP2 sing N N 208 U P "O5'" sing N N 209 U OP2 HOP2 sing N N 210 U "O5'" "C5'" sing N N 211 U "C5'" "C4'" sing N N 212 U "C5'" "H5'" sing N N 213 U "C5'" "H5''" sing N N 214 U "C4'" "O4'" sing N N 215 U "C4'" "C3'" sing N N 216 U "C4'" "H4'" sing N N 217 U "O4'" "C1'" sing N N 218 U "C3'" "O3'" sing N N 219 U "C3'" "C2'" sing N N 220 U "C3'" "H3'" sing N N 221 U "O3'" "HO3'" sing N N 222 U "C2'" "O2'" sing N N 223 U "C2'" "C1'" sing N N 224 U "C2'" "H2'" sing N N 225 U "O2'" "HO2'" sing N N 226 U "C1'" N1 sing N N 227 U "C1'" "H1'" sing N N 228 U N1 C2 sing N N 229 U N1 C6 sing N N 230 U C2 O2 doub N N 231 U C2 N3 sing N N 232 U N3 C4 sing N N 233 U N3 H3 sing N N 234 U C4 O4 doub N N 235 U C4 C5 sing N N 236 U C5 C6 doub N N 237 U C5 H5 sing N N 238 U C6 H6 sing N N 239 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8HZD 'double helix' 8HZD 'a-form double helix' 8HZD tetraloop 8HZD 'mismatched base pair' 8HZD 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 36 1_555 -0.437 -0.391 -0.267 -7.342 -6.100 -1.503 1 A_G1:C36_A A 1 ? A 36 ? 19 1 1 A G 2 1_555 A C 35 1_555 -0.088 -0.204 -0.217 -6.540 -18.219 -0.694 2 A_G2:C35_A A 2 ? A 35 ? 19 1 1 A A 3 1_555 A U 34 1_555 0.072 -0.071 0.016 -2.425 -21.578 0.370 3 A_A3:U34_A A 3 ? A 34 ? 20 1 1 A A 4 1_555 A U 33 1_555 0.447 -0.095 0.640 9.353 -13.932 -1.642 4 A_A4:U33_A A 4 ? A 33 ? 20 1 1 A G 5 1_555 A C 32 1_555 -0.065 0.051 0.013 0.711 -17.066 2.661 5 A_G5:C32_A A 5 ? A 32 ? 19 1 1 A A 6 1_555 A A 31 1_555 1.488 1.540 -0.118 -11.806 3.468 -177.090 6 A_A6:A31_A A 6 ? A 31 ? 1 2 1 A U 8 1_555 A A 29 1_555 4.134 -2.058 -0.605 12.692 -9.222 -96.057 7 A_U8:A29_A A 8 ? A 29 ? 24 4 1 A A 15 1_555 A G 28 1_555 -7.397 -4.913 -0.170 -2.612 -6.051 -27.759 8 A_A15:G28_A A 15 ? A 28 ? ? 10 1 A U 16 1_555 A A 27 1_555 -0.471 -0.067 -0.237 6.607 -7.195 -1.608 9 A_U16:A27_A A 16 ? A 27 ? 20 1 1 A G 17 1_555 A C 26 1_555 0.100 -0.137 -0.084 2.851 -7.545 -1.516 10 A_G17:C26_A A 17 ? A 26 ? 19 1 1 A C 18 1_555 A G 25 1_555 0.343 -0.103 -0.301 4.823 -11.993 4.293 11 A_C18:G25_A A 18 ? A 25 ? 19 1 1 A C 19 1_555 A G 24 1_555 0.263 -0.273 -0.386 -3.896 2.145 -1.894 12 A_C19:G24_A A 19 ? A 24 ? 19 1 1 A G 20 1_555 A A 23 1_555 7.105 -5.240 0.754 10.848 0.941 -15.714 13 A_G20:A23_A A 20 ? A 23 ? ? 10 1 B GDP 1 1_555 B C 36 1_555 -0.513 0.059 0.130 -0.023 -7.580 -6.025 14 B_GDP1:C36_B B 1 ? B 36 ? 19 1 1 B G 2 1_555 B C 35 1_555 -0.147 0.257 0.240 -6.503 -20.100 2.780 15 B_G2:C35_B B 2 ? B 35 ? 19 1 1 B A 3 1_555 B U 34 1_555 0.262 -0.409 0.313 -1.533 -15.708 -0.532 16 B_A3:U34_B B 3 ? B 34 ? 20 1 1 B A 4 1_555 B U 33 1_555 0.145 -0.124 0.281 -0.753 -18.409 -3.702 17 B_A4:U33_B B 4 ? B 33 ? 20 1 1 B G 5 1_555 B C 32 1_555 -0.287 -0.100 0.030 -5.926 -24.714 0.538 18 B_G5:C32_B B 5 ? B 32 ? 19 1 1 B A 6 1_555 B A 31 1_555 1.392 1.792 0.005 -18.512 0.316 -172.693 19 B_A6:A31_B B 6 ? B 31 ? 1 2 1 B U 8 1_555 B A 29 1_555 4.120 -1.979 -0.984 9.552 -9.859 -98.879 20 B_U8:A29_B B 8 ? B 29 ? 24 4 1 B A 15 1_555 B G 28 1_555 -6.789 -4.366 0.117 1.248 0.437 -9.433 21 B_A15:G28_B B 15 ? B 28 ? 11 10 1 B U 16 1_555 B A 27 1_555 -0.192 -0.062 -0.276 5.455 -5.038 3.494 22 B_U16:A27_B B 16 ? B 27 ? 20 1 1 B G 17 1_555 B C 26 1_555 -0.278 -0.257 -0.045 2.601 -7.999 0.388 23 B_G17:C26_B B 17 ? B 26 ? 19 1 1 B C 18 1_555 B G 25 1_555 0.287 -0.240 -0.211 6.577 -13.369 1.466 24 B_C18:G25_B B 18 ? B 25 ? 19 1 1 B C 19 1_555 B G 24 1_555 0.393 -0.272 -0.346 0.576 -1.740 -2.816 25 B_C19:G24_B B 19 ? B 24 ? 19 1 1 B G 20 1_555 B A 23 1_555 7.239 -5.049 0.787 10.483 -1.633 -20.431 26 B_G20:A23_B B 20 ? B 23 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 36 1_555 A G 2 1_555 A C 35 1_555 -0.391 -1.529 3.431 -0.533 4.458 31.298 -3.647 0.617 3.194 8.211 0.981 31.611 1 AA_G1G2:C35C36_AA A 1 ? A 36 ? A 2 ? A 35 ? 1 A G 2 1_555 A C 35 1_555 A A 3 1_555 A U 34 1_555 -0.270 -0.891 3.199 -2.792 5.680 33.560 -2.382 0.035 3.025 9.729 4.783 34.135 2 AA_G2A3:U34C35_AA A 2 ? A 35 ? A 3 ? A 34 ? 1 A A 3 1_555 A U 34 1_555 A A 4 1_555 A U 33 1_555 0.439 -0.946 2.819 -1.255 4.388 33.753 -2.204 -0.918 2.661 7.515 2.148 34.051 3 AA_A3A4:U33U34_AA A 3 ? A 34 ? A 4 ? A 33 ? 1 A A 4 1_555 A U 33 1_555 A G 5 1_555 A C 32 1_555 0.938 -1.586 3.469 10.253 9.505 31.482 -4.229 0.079 3.030 16.536 -17.836 34.375 4 AA_A4G5:C32U33_AA A 4 ? A 33 ? A 5 ? A 32 ? 1 A G 5 1_555 A C 32 1_555 A A 6 1_555 A A 31 1_555 -3.403 0.749 0.722 90.683 150.625 124.953 0.285 1.755 0.126 75.515 -45.464 178.067 5 AA_G5A6:A31C32_AA A 5 ? A 32 ? A 6 ? A 31 ? 1 A A 6 1_555 A A 31 1_555 A U 8 1_555 A A 29 1_555 -2.292 1.918 -1.803 -138.608 -95.816 155.815 0.857 1.294 -1.598 -47.980 69.408 177.595 6 AA_A6U8:A29A31_AA A 6 ? A 31 ? A 8 ? A 29 ? 1 A A 15 1_555 A G 28 1_555 A U 16 1_555 A A 27 1_555 1.673 -1.234 3.263 -3.957 7.883 59.251 -1.614 -1.866 2.985 7.925 3.978 59.844 7 AA_A15U16:A27G28_AA A 15 ? A 28 ? A 16 ? A 27 ? 1 A U 16 1_555 A A 27 1_555 A G 17 1_555 A C 26 1_555 -0.474 -1.763 3.376 -3.896 10.977 30.916 -4.882 0.205 2.652 19.735 7.005 32.988 8 AA_U16G17:C26A27_AA A 16 ? A 27 ? A 17 ? A 26 ? 1 A G 17 1_555 A C 26 1_555 A C 18 1_555 A G 25 1_555 0.722 -2.056 3.130 1.447 4.777 34.378 -4.117 -1.006 2.855 8.029 -2.431 34.728 9 AA_G17C18:G25C26_AA A 17 ? A 26 ? A 18 ? A 25 ? 1 A C 18 1_555 A G 25 1_555 A C 19 1_555 A G 24 1_555 -0.822 -1.894 3.379 0.331 13.027 32.169 -5.035 1.427 2.443 22.395 -0.569 34.643 10 AA_C18C19:G24G25_AA A 18 ? A 25 ? A 19 ? A 24 ? 1 A C 19 1_555 A G 24 1_555 A G 20 1_555 A A 23 1_555 -1.755 -1.003 2.916 -3.665 8.098 54.785 -1.498 1.696 2.856 8.736 3.954 55.446 11 AA_C19G20:A23G24_AA A 19 ? A 24 ? A 20 ? A 23 ? 1 B GDP 1 1_555 B C 36 1_555 B G 2 1_555 B C 35 1_555 0.335 -1.698 3.235 -2.473 8.021 36.022 -3.687 -0.840 2.778 12.758 3.934 36.955 12 BB_GDP1G2:C35C36_BB B 1 ? B 36 ? B 2 ? B 35 ? 1 B G 2 1_555 B C 35 1_555 B A 3 1_555 B U 34 1_555 -0.480 -1.192 2.928 -2.522 7.144 35.889 -2.744 0.463 2.676 11.436 4.038 36.655 13 BB_G2A3:U34C35_BB B 2 ? B 35 ? B 3 ? B 34 ? 1 B A 3 1_555 B U 34 1_555 B A 4 1_555 B U 33 1_555 0.184 -1.251 3.099 3.584 4.983 34.404 -2.780 0.194 2.899 8.342 -6.000 34.931 14 BB_A3A4:U33U34_BB B 3 ? B 34 ? B 4 ? B 33 ? 1 B A 4 1_555 B U 33 1_555 B G 5 1_555 B C 32 1_555 0.855 -1.648 3.344 8.667 13.797 29.167 -5.067 -0.113 2.486 25.082 -15.755 33.323 15 BB_A4G5:C32U33_BB B 4 ? B 33 ? B 5 ? B 32 ? 1 B G 5 1_555 B C 32 1_555 B A 6 1_555 B A 31 1_555 -3.058 1.167 0.560 90.461 154.117 128.953 0.502 1.577 0.272 77.113 -45.262 179.442 16 BB_G5A6:A31C32_BB B 5 ? B 32 ? B 6 ? B 31 ? 1 B A 6 1_555 B A 31 1_555 B U 8 1_555 B A 29 1_555 -1.842 2.131 -2.648 -138.131 -93.845 147.367 0.862 1.222 -2.451 -47.069 69.280 176.353 17 BB_A6U8:A29A31_BB B 6 ? B 31 ? B 8 ? B 29 ? 1 B A 15 1_555 B G 28 1_555 B U 16 1_555 B A 27 1_555 1.275 -1.118 3.307 0.840 6.346 56.999 -1.510 -1.284 3.194 6.627 -0.877 57.328 18 BB_A15U16:A27G28_BB B 15 ? B 28 ? B 16 ? B 27 ? 1 B U 16 1_555 B A 27 1_555 B G 17 1_555 B C 26 1_555 -0.606 -1.880 3.287 -3.076 8.591 28.590 -5.287 0.579 2.671 16.862 6.037 29.982 19 BB_U16G17:C26A27_BB B 16 ? B 27 ? B 17 ? B 26 ? 1 B G 17 1_555 B C 26 1_555 B C 18 1_555 B G 25 1_555 0.327 -1.914 3.206 1.811 2.157 33.942 -3.599 -0.280 3.095 3.686 -3.096 34.055 20 BB_G17C18:G25C26_BB B 17 ? B 26 ? B 18 ? B 25 ? 1 B C 18 1_555 B G 25 1_555 B C 19 1_555 B G 24 1_555 -0.808 -1.858 3.360 -1.482 10.115 31.917 -4.809 1.170 2.696 17.831 2.613 33.473 21 BB_C18C19:G24G25_BB B 18 ? B 25 ? B 19 ? B 24 ? 1 B C 19 1_555 B G 24 1_555 B G 20 1_555 B A 23 1_555 -2.206 -1.185 3.068 -3.205 10.480 53.604 -1.877 2.225 2.924 11.485 3.513 54.632 22 BB_C19G20:A23G24_BB B 19 ? B 24 ? B 20 ? B 23 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id O2I _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id O2I _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code 8HZE _pdbx_initial_refinement_model.details MR # _atom_sites.entry_id 8HZD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012904 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005694 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021523 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019431 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F MG N O P # loop_