HEADER PROTEIN BINDING 17-JAN-23 8I3E TITLE CRYSTAL STRUCTURE OF ELKS1 IN COMPLEX WITH PICCOLO COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELKS/RAB6-INTERACTING/CAST FAMILY MEMBER 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MKIAA0559 PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ERC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 GENE: PCLO, MKIAA0559; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL KEYWDS ELKS, PICCOLO, SCAFFOLD PROTEIN, PRESYNAPSE, SYNAPTIC VESICLE, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Q.CAI,M.ZHANG REVDAT 2 22-MAY-24 8I3E 1 JRNL REVDAT 1 24-JAN-24 8I3E 0 JRNL AUTH H.QIU,X.WU,X.MA,S.LI,Q.CAI,M.GANZELLA,L.GE,H.ZHANG,M.ZHANG JRNL TITL SHORT-DISTANCE VESICLE TRANSPORT VIA PHASE SEPARATION. JRNL REF CELL V. 187 2175 2024 JRNL REFN ISSN 1097-4172 JRNL PMID 38552623 JRNL DOI 10.1016/J.CELL.2024.03.003 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 560 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1100 - 5.4000 0.98 2478 131 0.2284 0.2292 REMARK 3 2 5.4000 - 4.2900 0.99 2491 157 0.2408 0.2868 REMARK 3 3 4.2900 - 3.7500 1.00 2545 134 0.2146 0.2901 REMARK 3 4 3.7500 - 3.4000 1.00 2553 126 0.2465 0.3463 REMARK 3 5 3.4000 - 3.1600 1.00 2515 122 0.2625 0.3759 REMARK 3 6 3.1600 - 2.9700 1.00 2524 135 0.2931 0.3351 REMARK 3 7 2.9700 - 2.8300 1.00 2532 131 0.2783 0.3363 REMARK 3 8 2.8200 - 2.7000 0.98 2476 133 0.3250 0.3578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.379 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2649 REMARK 3 ANGLE : 1.644 3527 REMARK 3 CHIRALITY : 0.070 418 REMARK 3 PLANARITY : 0.008 457 REMARK 3 DIHEDRAL : 19.871 346 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 471 THROUGH 576 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5190 37.7790 2.0871 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.3633 REMARK 3 T33: 0.3623 T12: -0.0206 REMARK 3 T13: -0.0173 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.4832 L22: 0.4707 REMARK 3 L33: 0.4073 L12: 0.6570 REMARK 3 L13: -0.2304 L23: -0.3928 REMARK 3 S TENSOR REMARK 3 S11: -0.1856 S12: 0.0282 S13: 0.0295 REMARK 3 S21: 0.3009 S22: 0.1997 S23: -0.1183 REMARK 3 S31: -0.0730 S32: -0.1248 S33: 0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 577 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3103 -47.9941 35.1517 REMARK 3 T TENSOR REMARK 3 T11: 1.0348 T22: 0.7209 REMARK 3 T33: 1.0738 T12: -0.1385 REMARK 3 T13: 0.4546 T23: 0.1378 REMARK 3 L TENSOR REMARK 3 L11: 0.0394 L22: 0.0297 REMARK 3 L33: 0.1014 L12: 0.0470 REMARK 3 L13: 0.1280 L23: -0.1255 REMARK 3 S TENSOR REMARK 3 S11: 0.3592 S12: 0.3775 S13: -0.0339 REMARK 3 S21: -0.1524 S22: -0.0625 S23: -0.1254 REMARK 3 S31: -0.1363 S32: -0.6140 S33: 0.0023 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 470 THROUGH 574 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1820 39.7841 1.6815 REMARK 3 T TENSOR REMARK 3 T11: 0.4889 T22: 0.3963 REMARK 3 T33: 0.3464 T12: -0.0108 REMARK 3 T13: -0.0737 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.1483 L22: 0.7527 REMARK 3 L33: -0.3205 L12: 0.1300 REMARK 3 L13: -0.0038 L23: 0.2312 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.0488 S13: 0.0057 REMARK 3 S21: 0.4648 S22: 0.0362 S23: 0.0029 REMARK 3 S31: -0.2800 S32: -0.0036 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 575 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7044 -52.7967 34.1343 REMARK 3 T TENSOR REMARK 3 T11: 1.0927 T22: 0.7986 REMARK 3 T33: 1.0707 T12: -0.1836 REMARK 3 T13: 0.3899 T23: 0.1030 REMARK 3 L TENSOR REMARK 3 L11: 0.0376 L22: -0.0182 REMARK 3 L33: 0.0287 L12: 0.0525 REMARK 3 L13: 0.0249 L23: 0.1018 REMARK 3 S TENSOR REMARK 3 S11: -0.1431 S12: 0.4331 S13: -0.2242 REMARK 3 S21: -0.1720 S22: -0.1102 S23: 0.1532 REMARK 3 S31: 0.5892 S32: -0.4275 S33: 0.0007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3690 THROUGH 3745 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4489 6.9794 12.7417 REMARK 3 T TENSOR REMARK 3 T11: 0.3931 T22: 0.4115 REMARK 3 T33: 0.3881 T12: -0.0159 REMARK 3 T13: 0.0223 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.4607 L22: 0.4687 REMARK 3 L33: 0.2416 L12: -0.1096 REMARK 3 L13: 0.1711 L23: 0.2328 REMARK 3 S TENSOR REMARK 3 S11: -0.3635 S12: 0.0079 S13: -0.2499 REMARK 3 S21: -0.3076 S22: 0.1708 S23: -0.2236 REMARK 3 S31: 0.4493 S32: -0.2188 S33: -0.0017 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 471 through 604) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.24500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 1.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM FORMATE PH 7.0, 12 % REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.18950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.05550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.18950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.05550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 465 REMARK 465 PRO A 466 REMARK 465 GLY A 467 REMARK 465 SER A 468 REMARK 465 SER A 469 REMARK 465 ASP A 470 REMARK 465 LYS A 605 REMARK 465 GLU A 606 REMARK 465 GLN A 607 REMARK 465 ARG A 608 REMARK 465 ASP A 609 REMARK 465 ARG A 610 REMARK 465 GLY B 465 REMARK 465 PRO B 466 REMARK 465 GLY B 467 REMARK 465 SER B 468 REMARK 465 SER B 469 REMARK 465 LYS B 605 REMARK 465 GLU B 606 REMARK 465 GLN B 607 REMARK 465 ARG B 608 REMARK 465 ASP B 609 REMARK 465 ARG B 610 REMARK 465 GLY C 3679 REMARK 465 PRO C 3680 REMARK 465 GLY C 3681 REMARK 465 SER C 3682 REMARK 465 ASN C 3683 REMARK 465 THR C 3684 REMARK 465 MET C 3685 REMARK 465 ALA C 3686 REMARK 465 ARG C 3687 REMARK 465 ALA C 3688 REMARK 465 LYS C 3689 REMARK 465 LYS C 3746 REMARK 465 ARG C 3747 REMARK 465 GLU C 3748 REMARK 465 ARG C 3749 REMARK 465 ALA C 3750 REMARK 465 TYR C 3751 REMARK 465 LEU C 3752 REMARK 465 GLN C 3753 REMARK 465 GLY C 3754 REMARK 465 VAL C 3755 REMARK 465 ALA C 3756 REMARK 465 GLU C 3757 REMARK 465 ASP C 3758 REMARK 465 ARG C 3759 REMARK 465 ASP C 3760 REMARK 465 TYR C 3761 REMARK 465 MET C 3762 REMARK 465 SER C 3763 REMARK 465 ASP C 3764 REMARK 465 SER C 3765 REMARK 465 GLU C 3766 REMARK 465 VAL C 3767 REMARK 465 SER C 3768 REMARK 465 SER C 3769 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 572 OD1 ASP C 3695 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 512 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU B 501 CA - CB - CG ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG B 572 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 495 -66.58 -28.67 REMARK 500 ASN A 582 0.71 -67.32 REMARK 500 THR A 583 4.59 -67.91 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8I3E A 469 610 UNP A0A8I6AIL7_RAT DBREF2 8I3E A A0A8I6AIL7 469 610 DBREF1 8I3E B 469 610 UNP A0A8I6AIL7_RAT DBREF2 8I3E B A0A8I6AIL7 469 610 DBREF 8I3E C 3683 3769 UNP Q8CHE8 Q8CHE8_MOUSE 399 485 SEQADV 8I3E GLY A 465 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E PRO A 466 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E GLY A 467 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E SER A 468 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E GLY B 465 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E PRO B 466 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E GLY B 467 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E SER B 468 UNP A0A8I6AIL EXPRESSION TAG SEQADV 8I3E GLY C 3679 UNP Q8CHE8 EXPRESSION TAG SEQADV 8I3E PRO C 3680 UNP Q8CHE8 EXPRESSION TAG SEQADV 8I3E GLY C 3681 UNP Q8CHE8 EXPRESSION TAG SEQADV 8I3E SER C 3682 UNP Q8CHE8 EXPRESSION TAG SEQRES 1 A 146 GLY PRO GLY SER SER ASP SER LYS GLN HIS ILE GLU VAL SEQRES 2 A 146 LEU LYS GLU SER LEU THR ALA LYS GLU GLN ARG ALA ALA SEQRES 3 A 146 ILE LEU GLN THR GLU VAL ASP ALA LEU ARG LEU ARG LEU SEQRES 4 A 146 GLU GLU LYS GLU THR MET LEU ASN LYS LYS THR LYS GLN SEQRES 5 A 146 ILE GLN ASP MET ALA GLU GLU LYS GLY THR GLN ALA GLY SEQRES 6 A 146 GLU ILE HIS ASP LEU LYS ASP MET LEU ASP VAL LYS GLU SEQRES 7 A 146 ARG LYS VAL ASN VAL LEU GLN LYS LYS ILE GLU ASN LEU SEQRES 8 A 146 GLN GLU GLN LEU ARG ASP LYS GLU LYS GLN MET SER SER SEQRES 9 A 146 LEU LYS GLU ARG VAL LYS SER LEU GLN ALA ASP THR THR SEQRES 10 A 146 ASN THR ASP THR ALA LEU THR THR LEU GLU GLU ALA LEU SEQRES 11 A 146 ALA ASP LYS GLU ARG THR ILE GLU ARG LEU LYS GLU GLN SEQRES 12 A 146 ARG ASP ARG SEQRES 1 B 146 GLY PRO GLY SER SER ASP SER LYS GLN HIS ILE GLU VAL SEQRES 2 B 146 LEU LYS GLU SER LEU THR ALA LYS GLU GLN ARG ALA ALA SEQRES 3 B 146 ILE LEU GLN THR GLU VAL ASP ALA LEU ARG LEU ARG LEU SEQRES 4 B 146 GLU GLU LYS GLU THR MET LEU ASN LYS LYS THR LYS GLN SEQRES 5 B 146 ILE GLN ASP MET ALA GLU GLU LYS GLY THR GLN ALA GLY SEQRES 6 B 146 GLU ILE HIS ASP LEU LYS ASP MET LEU ASP VAL LYS GLU SEQRES 7 B 146 ARG LYS VAL ASN VAL LEU GLN LYS LYS ILE GLU ASN LEU SEQRES 8 B 146 GLN GLU GLN LEU ARG ASP LYS GLU LYS GLN MET SER SER SEQRES 9 B 146 LEU LYS GLU ARG VAL LYS SER LEU GLN ALA ASP THR THR SEQRES 10 B 146 ASN THR ASP THR ALA LEU THR THR LEU GLU GLU ALA LEU SEQRES 11 B 146 ALA ASP LYS GLU ARG THR ILE GLU ARG LEU LYS GLU GLN SEQRES 12 B 146 ARG ASP ARG SEQRES 1 C 91 GLY PRO GLY SER ASN THR MET ALA ARG ALA LYS ILE LEU SEQRES 2 C 91 GLN ASP ILE ASP ARG GLU LEU ASP LEU VAL GLU ARG GLU SEQRES 3 C 91 SER ALA LYS LEU ARG LYS LYS GLN ALA GLU LEU ASP GLU SEQRES 4 C 91 GLU GLU LYS GLU ILE ASP ALA LYS LEU ARG TYR LEU GLU SEQRES 5 C 91 MET GLY ILE ASN ARG ARG LYS GLU ALA LEU LEU LYS GLU SEQRES 6 C 91 ARG GLU LYS ARG GLU ARG ALA TYR LEU GLN GLY VAL ALA SEQRES 7 C 91 GLU ASP ARG ASP TYR MET SER ASP SER GLU VAL SER SER HELIX 1 AA1 SER A 471 ALA A 578 1 108 HELIX 2 AA2 ASP A 579 ASN A 582 5 4 HELIX 3 AA3 THR A 583 LEU A 604 1 22 HELIX 4 AA4 SER B 471 SER B 575 1 105 HELIX 5 AA5 ASP B 579 ARG B 603 1 25 HELIX 6 AA6 LEU C 3691 GLU C 3745 1 55 CRYST1 110.379 46.111 84.359 90.00 110.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009060 0.000000 0.003376 0.00000 SCALE2 0.000000 0.021687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012650 0.00000 MTRIX1 1 -0.139594 0.023765 -0.989924 18.00766 1 MTRIX2 1 0.687837 0.721479 -0.079675 -0.23394 1 MTRIX3 1 0.712315 -0.692029 -0.117060 18.28765 1