HEADER OXIDOREDUCTASE 20-JAN-23 8I4R TITLE CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE COMPLEXED WITH ACETYL-COA TITLE 2 FROM THERMOBIFIDA FUSCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA; SOURCE 3 ORGANISM_TAXID: 2021; SOURCE 4 STRAIN: STRAIN YX; SOURCE 5 GENE: TFU_1647; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS ACYL-COA DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CHOI,J.SEOK,K.-J.KIM REVDAT 1 24-JAN-24 8I4R 0 JRNL AUTH M.CHOI,K.-J.KIM JRNL TITL CRYSTAL STRUCTURE OF ACYL-COA DEHYDROGENASE COMPLEXED WITH JRNL TITL 2 ACETYL-COA FROM THERMOBIFIDA FUSCA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC V7.1.018 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 27192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1426 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.30000 REMARK 3 B22 (A**2) : 2.30000 REMARK 3 B33 (A**2) : -4.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8I4R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300034921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE SODIUM CITRATE REMARK 280 POTASSIUM SODIUM TARTRATE TETRAHYDRATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 51.07150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 156.09150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.04575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.07150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 234.13725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 234.13725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.07150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.04575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 51.07150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 156.09150 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 51.07150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 156.09150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 51.07150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 234.13725 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 78.04575 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.07150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 78.04575 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 234.13725 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 51.07150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 51.07150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 156.09150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 385 REMARK 465 LEU A 386 REMARK 465 GLU A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 513 O HOH A 513 10555 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASN A 162 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 312 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 356 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 356 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 375 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 5 35.06 -94.83 REMARK 500 ASP A 53 31.68 70.57 REMARK 500 ALA A 56 58.42 -160.51 REMARK 500 TRP A 159 34.55 76.80 REMARK 500 ASP A 176 99.96 -162.64 REMARK 500 ILE A 208 53.72 30.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 21 0.09 SIDE CHAIN REMARK 500 ARG A 40 0.10 SIDE CHAIN REMARK 500 ARG A 82 0.19 SIDE CHAIN REMARK 500 ARG A 141 0.12 SIDE CHAIN REMARK 500 ARG A 204 0.08 SIDE CHAIN REMARK 500 ARG A 227 0.11 SIDE CHAIN REMARK 500 ARG A 237 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 572 DISTANCE = 15.40 ANGSTROMS DBREF 8I4R A 1 385 UNP Q47PD7 Q47PD7_THEFY 1 385 SEQADV 8I4R LEU A 386 UNP Q47PD7 EXPRESSION TAG SEQADV 8I4R GLU A 387 UNP Q47PD7 EXPRESSION TAG SEQADV 8I4R HIS A 388 UNP Q47PD7 EXPRESSION TAG SEQADV 8I4R HIS A 389 UNP Q47PD7 EXPRESSION TAG SEQADV 8I4R HIS A 390 UNP Q47PD7 EXPRESSION TAG SEQADV 8I4R HIS A 391 UNP Q47PD7 EXPRESSION TAG SEQADV 8I4R HIS A 392 UNP Q47PD7 EXPRESSION TAG SEQADV 8I4R HIS A 393 UNP Q47PD7 EXPRESSION TAG SEQRES 1 A 393 MET SER ASP PHE ASP LEU TYR ARG PRO THR GLU GLU HIS SEQRES 2 A 393 GLU ALA LEU ARG GLU ALA ILE ARG SER VAL ALA GLU ASP SEQRES 3 A 393 LYS ILE ALA PRO HIS ALA ALA ASP VAL ASP GLU GLN SER SEQRES 4 A 393 ARG PHE PRO GLN GLU ALA TYR GLU ALA LEU ARG ALA SER SEQRES 5 A 393 ASP PHE HIS ALA PRO HIS VAL ALA GLU GLU TYR GLY GLY SEQRES 6 A 393 VAL GLY ALA ASP ALA LEU ALA THR CYS ILE VAL ILE GLU SEQRES 7 A 393 GLU ILE ALA ARG VAL CYS ALA SER SER SER LEU ILE PRO SEQRES 8 A 393 ALA VAL ASN LYS LEU GLY SER MET PRO LEU ILE LEU SER SEQRES 9 A 393 GLY SER ASP GLU VAL LYS GLN ARG TYR LEU PRO GLU LEU SEQRES 10 A 393 ALA SER GLY GLU ALA MET PHE SER TYR GLY LEU SER GLU SEQRES 11 A 393 ARG GLU ALA GLY SER ASP THR ALA SER MET ARG THR ARG SEQRES 12 A 393 ALA VAL ARG ASP GLY ASP ASP TRP ILE LEU ASN GLY GLN SEQRES 13 A 393 LYS SER TRP ILE THR ASN ALA GLY ILE SER LYS TYR TYR SEQRES 14 A 393 THR VAL MET ALA VAL THR ASP PRO ASP GLY PRO ARG GLY SEQRES 15 A 393 ARG ASN ILE SER ALA PHE VAL VAL HIS ILE ASP ASP PRO SEQRES 16 A 393 GLY PHE SER PHE GLY GLU PRO GLU ARG LYS LEU GLY ILE SEQRES 17 A 393 LYS GLY SER PRO THR ARG GLU LEU ILE PHE ASP ASN VAL SEQRES 18 A 393 ARG ILE PRO GLY ASP ARG LEU VAL GLY LYS VAL GLY GLU SEQRES 19 A 393 GLY LEU ARG THR ALA LEU ARG THR LEU ASP HIS THR ARG SEQRES 20 A 393 VAL THR ILE GLY ALA GLN ALA VAL GLY ILE ALA GLN GLY SEQRES 21 A 393 ALA LEU ASP TYR ALA LEU GLY TYR VAL LYS GLU ARG LYS SEQRES 22 A 393 GLN PHE GLY LYS ALA ILE ALA ASP PHE GLN GLY ILE GLN SEQRES 23 A 393 PHE MET LEU ALA ASP MET ALA MET LYS LEU GLU ALA ALA SEQRES 24 A 393 ARG GLN MET VAL TYR VAL ALA ALA ALA LYS SER GLU ARG SEQRES 25 A 393 ASP ASP ALA ASP LEU SER PHE TYR GLY ALA ALA ALA LYS SEQRES 26 A 393 CYS PHE ALA SER ASP VAL ALA MET GLU ILE THR THR ASP SEQRES 27 A 393 ALA VAL GLN LEU LEU GLY GLY TYR GLY TYR THR ARG ASP SEQRES 28 A 393 TYR PRO VAL GLU ARG MET MET ARG ASP ALA LYS ILE THR SEQRES 29 A 393 GLN ILE TYR GLU GLY THR ASN GLN ILE GLN ARG VAL VAL SEQRES 30 A 393 MET ALA ARG GLN LEU LEU LYS LYS LEU GLU HIS HIS HIS SEQRES 31 A 393 HIS HIS HIS HET FAD A 401 53 HET ACO A 402 51 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ACO ACETYL COENZYME *A FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 ACO C23 H38 N7 O17 P3 S FORMUL 4 HOH *72(H2 O) HELIX 1 AA1 THR A 10 ILE A 28 1 19 HELIX 2 AA2 HIS A 31 GLN A 38 1 8 HELIX 3 AA3 PRO A 42 SER A 52 1 11 HELIX 4 AA4 ALA A 60 GLY A 64 5 5 HELIX 5 AA5 ASP A 69 ARG A 82 1 14 HELIX 6 AA6 CYS A 84 GLY A 105 1 22 HELIX 7 AA7 SER A 106 SER A 119 1 14 HELIX 8 AA8 ASP A 136 MET A 140 5 5 HELIX 9 AA9 PRO A 224 ASP A 226 5 3 HELIX 10 AB1 GLU A 234 ARG A 272 1 39 HELIX 11 AB2 PHE A 282 ASP A 313 1 32 HELIX 12 AB3 ASP A 316 LEU A 343 1 28 HELIX 13 AB4 GLY A 344 THR A 349 5 6 HELIX 14 AB5 PRO A 353 LYS A 362 1 10 HELIX 15 AB6 ILE A 363 ILE A 366 5 4 HELIX 16 AB7 THR A 370 LYS A 384 1 15 SHEET 1 AA1 4 PHE A 124 GLY A 127 0 SHEET 2 AA1 4 TYR A 168 VAL A 174 1 O THR A 170 N GLY A 127 SHEET 3 AA1 4 ILE A 185 HIS A 191 -1 O PHE A 188 N VAL A 171 SHEET 4 AA1 4 LEU A 228 VAL A 229 -1 O VAL A 229 N ALA A 187 SHEET 1 AA2 4 ARG A 143 ASP A 147 0 SHEET 2 AA2 4 ASP A 150 THR A 161 -1 O ASP A 150 N ASP A 147 SHEET 3 AA2 4 THR A 213 ILE A 223 -1 O ILE A 223 N TRP A 151 SHEET 4 AA2 4 PHE A 197 PHE A 199 -1 N SER A 198 O ILE A 217 SHEET 1 AA3 2 LYS A 273 GLN A 274 0 SHEET 2 AA3 2 LYS A 277 ALA A 278 -1 O LYS A 277 N GLN A 274 CRYST1 102.143 102.143 312.183 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009790 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003203 0.00000