HEADER VIRAL PROTEIN/IMMUNE SYSTEM 25-JAN-23 8I5H TITLE CRYSTAL STRUCTURE OF SARS-COV-2 DELTA VARIANT SPIKE RECEPTOR-BINDING TITLE 2 DOMAIN (RBD) IN COMPLEX WITH NCV2SG48 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: R, A, D; COMPND 4 FRAGMENT: DELTA RBD; COMPND 5 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FAB HEAVY CHAIN; COMPND 9 CHAIN: H, B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: FAB LIGHT CHAIN; COMPND 13 CHAIN: L, C, F; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 VARIANT: DELTA; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SPIKE, CORONAVIRUS, VIRAL PROTEIN, FAB, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX, VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMAMOTO,A.HIGASHIURA REVDAT 1 19-APR-23 8I5H 0 JRNL AUTH K.SHITAOKA,A.HIGASHIURA,Y.KAWANO,A.YAMAMOTO,Y.MIZOGUCHI, JRNL AUTH 2 T.HASHIGUCHI,N.NISHIMICHI,S.HUANG,A.ITO,S.OHKI,M.KANDA, JRNL AUTH 3 T.TANIGUCHI,R.YOSHIZATO,H.AZUMA,Y.KITAJIMA,Y.YOKOSAKI, JRNL AUTH 4 S.OKADA,T.SAKAGUCHI,T.YASUDA JRNL TITL STRUCTURAL BASIS OF SPIKE RBM-SPECIFIC HUMAN ANTIBODIES JRNL TITL 2 COUNTERACTING BROAD SARS-COV-2 VARIANTS. JRNL REF COMMUN BIOL V. 6 395 2023 JRNL REFN ESSN 2399-3642 JRNL PMID 37041231 JRNL DOI 10.1038/S42003-023-04782-6 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 111174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9770 - 7.3831 1.00 3793 195 0.1539 0.1726 REMARK 3 2 7.3831 - 5.8649 1.00 3659 183 0.1705 0.1918 REMARK 3 3 5.8649 - 5.1249 1.00 3585 203 0.1610 0.2107 REMARK 3 4 5.1249 - 4.6570 1.00 3553 192 0.1424 0.1981 REMARK 3 5 4.6570 - 4.3235 1.00 3563 192 0.1359 0.1480 REMARK 3 6 4.3235 - 4.0688 1.00 3541 183 0.1527 0.1833 REMARK 3 7 4.0688 - 3.8652 1.00 3521 199 0.1674 0.2080 REMARK 3 8 3.8652 - 3.6970 1.00 3533 172 0.1811 0.2289 REMARK 3 9 3.6970 - 3.5548 1.00 3540 181 0.1984 0.2477 REMARK 3 10 3.5548 - 3.4322 1.00 3506 207 0.1959 0.2417 REMARK 3 11 3.4322 - 3.3249 1.00 3517 197 0.2073 0.2426 REMARK 3 12 3.3249 - 3.2299 1.00 3508 196 0.2184 0.2644 REMARK 3 13 3.2299 - 3.1449 1.00 3490 178 0.2305 0.2891 REMARK 3 14 3.1449 - 3.0682 1.00 3453 224 0.2292 0.2704 REMARK 3 15 3.0682 - 2.9984 1.00 3515 187 0.2277 0.2753 REMARK 3 16 2.9984 - 2.9346 1.00 3472 197 0.2394 0.2990 REMARK 3 17 2.9346 - 2.8760 1.00 3516 172 0.2369 0.2972 REMARK 3 18 2.8760 - 2.8217 1.00 3542 144 0.2294 0.3010 REMARK 3 19 2.8217 - 2.7713 1.00 3453 172 0.2224 0.2816 REMARK 3 20 2.7713 - 2.7243 1.00 3534 176 0.2243 0.2494 REMARK 3 21 2.7243 - 2.6804 1.00 3479 185 0.2291 0.3181 REMARK 3 22 2.6804 - 2.6392 1.00 3507 190 0.2352 0.2619 REMARK 3 23 2.6392 - 2.6004 1.00 3505 147 0.2496 0.3316 REMARK 3 24 2.6004 - 2.5637 1.00 3470 200 0.2475 0.3509 REMARK 3 25 2.5637 - 2.5291 1.00 3469 173 0.2638 0.3414 REMARK 3 26 2.5291 - 2.4963 1.00 3495 184 0.2701 0.3804 REMARK 3 27 2.4963 - 2.4651 1.00 3451 170 0.2711 0.3368 REMARK 3 28 2.4651 - 2.4354 1.00 3516 174 0.2792 0.3389 REMARK 3 29 2.4354 - 2.4070 1.00 3412 199 0.2852 0.3244 REMARK 3 30 2.4070 - 2.3800 1.00 3544 160 0.2856 0.3483 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 14709 REMARK 3 ANGLE : 0.982 20031 REMARK 3 CHIRALITY : 0.054 2221 REMARK 3 PLANARITY : 0.007 2583 REMARK 3 DIHEDRAL : 11.432 8750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300034990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 99.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 100 MM BIS-TRIS, 17.5% PEG 10K, REMARK 280 100 MM AMMONIUM ACETATE, 5% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.40250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.12150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 136.12150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.40250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 133 REMARK 465 SER H 134 REMARK 465 THR H 135 REMARK 465 SER H 136 REMARK 465 LYS H 218 REMARK 465 SER H 219 REMARK 465 CYS H 220 REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 THR H 223 REMARK 465 GLY H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 CYS L 215 REMARK 465 SER B 132 REMARK 465 LYS B 133 REMARK 465 SER B 134 REMARK 465 THR B 135 REMARK 465 SER B 136 REMARK 465 GLY B 137 REMARK 465 LYS B 218 REMARK 465 SER B 219 REMARK 465 CYS B 220 REMARK 465 ASP B 221 REMARK 465 LYS B 222 REMARK 465 THR B 223 REMARK 465 GLY B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 CYS C 215 REMARK 465 LYS E 133 REMARK 465 SER E 134 REMARK 465 THR E 135 REMARK 465 SER E 136 REMARK 465 GLY E 137 REMARK 465 GLY E 138 REMARK 465 LYS E 218 REMARK 465 SER E 219 REMARK 465 CYS E 220 REMARK 465 ASP E 221 REMARK 465 LYS E 222 REMARK 465 THR E 223 REMARK 465 GLY E 224 REMARK 465 HIS E 225 REMARK 465 HIS E 226 REMARK 465 HIS E 227 REMARK 465 HIS E 228 REMARK 465 HIS E 229 REMARK 465 HIS E 230 REMARK 465 CYS F 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS C 190 O HOH C 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 8 C - N - CA ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO C 8 C - N - CD ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA R 352 42.50 -102.45 REMARK 500 ALA R 372 -14.07 69.32 REMARK 500 PHE R 377 88.59 -152.11 REMARK 500 ASN R 422 -51.98 -129.14 REMARK 500 HIS R 519 30.81 -96.70 REMARK 500 LEU H 99 55.49 -97.81 REMARK 500 VAL H 100 -50.96 -21.07 REMARK 500 SER H 131 -169.79 -79.94 REMARK 500 ASP H 148 63.46 64.48 REMARK 500 SER L 30 -50.30 71.76 REMARK 500 SER L 31 13.17 -163.44 REMARK 500 ALA L 51 -18.82 72.96 REMARK 500 ASN L 139 62.03 62.42 REMARK 500 PHE A 377 88.84 -150.66 REMARK 500 ALA A 411 149.51 -170.12 REMARK 500 ASP A 428 36.09 -96.03 REMARK 500 VAL B 100 -51.29 -19.97 REMARK 500 ASP B 148 64.90 61.59 REMARK 500 PRO C 8 -80.30 -89.97 REMARK 500 SER C 9 -36.84 -161.37 REMARK 500 SER C 30 -66.33 -21.96 REMARK 500 ALA C 51 -18.49 73.72 REMARK 500 SER C 52 -7.39 -141.31 REMARK 500 ALA C 84 173.11 179.68 REMARK 500 ASN C 139 66.31 61.95 REMARK 500 ALA D 352 41.21 -102.03 REMARK 500 ALA D 372 -5.45 64.37 REMARK 500 THR D 385 -14.90 69.65 REMARK 500 LEU E 99 57.42 -100.67 REMARK 500 VAL E 100 -46.22 -23.05 REMARK 500 SER E 131 -163.38 -78.34 REMARK 500 GLN E 175 -98.09 -83.24 REMARK 500 SER E 176 -44.44 -150.50 REMARK 500 THR F 22 94.23 50.89 REMARK 500 ALA F 51 -21.43 72.19 REMARK 500 SER F 52 -2.07 -146.77 REMARK 500 ALA F 84 -175.11 -174.41 REMARK 500 LYS F 191 -61.67 -96.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU H 99 VAL H 100 -147.14 REMARK 500 PRO L 95 PRO L 96 79.32 REMARK 500 LEU B 99 VAL B 100 -142.60 REMARK 500 ILE C 29 SER C 30 -130.71 REMARK 500 PRO C 95 PRO C 96 108.75 REMARK 500 LEU E 99 VAL E 100 -147.24 REMARK 500 ILE F 21 THR F 22 148.49 REMARK 500 ILE F 29 SER F 30 -138.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7WNB RELATED DB: PDB REMARK 900 RELATED ID: 7WN2 RELATED DB: PDB REMARK 900 RELATED ID: 7YOW RELATED DB: PDB DBREF 8I5H R 334 527 UNP P0DTC2 SPIKE_SARS2 334 527 DBREF 8I5H H 1 230 PDB 8I5H 8I5H 1 230 DBREF 8I5H L 1 215 PDB 8I5H 8I5H 1 215 DBREF 8I5H A 334 527 UNP P0DTC2 SPIKE_SARS2 334 527 DBREF 8I5H B 1 230 PDB 8I5H 8I5H 1 230 DBREF 8I5H C 1 215 PDB 8I5H 8I5H 1 215 DBREF 8I5H D 334 527 UNP P0DTC2 SPIKE_SARS2 334 527 DBREF 8I5H E 1 230 PDB 8I5H 8I5H 1 230 DBREF 8I5H F 1 215 PDB 8I5H 8I5H 1 215 SEQADV 8I5H ARG R 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8I5H LYS R 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8I5H ARG A 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8I5H LYS A 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8I5H ARG D 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8I5H LYS D 478 UNP P0DTC2 THR 478 VARIANT SEQRES 1 R 194 ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR ARG SEQRES 2 R 194 PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER SEQRES 3 R 194 ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER ALA SEQRES 4 R 194 SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO THR SEQRES 5 R 194 LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SEQRES 6 R 194 SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA SEQRES 7 R 194 PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR LYS SEQRES 8 R 194 LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SEQRES 9 R 194 SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR ASN SEQRES 10 R 194 TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU LYS PRO SEQRES 11 R 194 PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY SEQRES 12 R 194 SER LYS PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS TYR SEQRES 13 R 194 PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN GLY SEQRES 14 R 194 VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER PHE SEQRES 15 R 194 GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 1 H 230 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 230 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 PHE ILE VAL SER ARG ASN TYR MET ASN TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA LEU ILE TYR SEQRES 5 H 230 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 H 230 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 230 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 230 VAL TYR TYR CYS ALA ARG ASP LEU VAL VAL TYR GLY LEU SEQRES 9 H 230 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 H 230 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 230 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 230 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 230 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 230 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 230 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 230 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 230 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 18 H 230 LYS THR GLY HIS HIS HIS HIS HIS HIS SEQRES 1 L 215 ALA ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 215 GLN GLY ILE SER SER HIS LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY LYS ALA PRO LYS LEU LEU ILE PHE ALA ALA SER SEQRES 5 L 215 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 215 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN HIS LEU SEQRES 8 L 215 ASN SER ASN PRO PRO ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 L 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 194 ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR ARG SEQRES 2 A 194 PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER SEQRES 3 A 194 ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER ALA SEQRES 4 A 194 SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO THR SEQRES 5 A 194 LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SEQRES 6 A 194 SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA SEQRES 7 A 194 PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR LYS SEQRES 8 A 194 LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SEQRES 9 A 194 SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR ASN SEQRES 10 A 194 TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU LYS PRO SEQRES 11 A 194 PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY SEQRES 12 A 194 SER LYS PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS TYR SEQRES 13 A 194 PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN GLY SEQRES 14 A 194 VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER PHE SEQRES 15 A 194 GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 1 B 230 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 B 230 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 230 PHE ILE VAL SER ARG ASN TYR MET ASN TRP VAL ARG GLN SEQRES 4 B 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA LEU ILE TYR SEQRES 5 B 230 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 B 230 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 B 230 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 B 230 VAL TYR TYR CYS ALA ARG ASP LEU VAL VAL TYR GLY LEU SEQRES 9 B 230 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 B 230 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 B 230 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 B 230 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 B 230 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 B 230 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 B 230 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 B 230 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 B 230 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 18 B 230 LYS THR GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 215 ALA ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 C 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 C 215 GLN GLY ILE SER SER HIS LEU ALA TRP TYR GLN GLN LYS SEQRES 4 C 215 PRO GLY LYS ALA PRO LYS LEU LEU ILE PHE ALA ALA SER SEQRES 5 C 215 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 C 215 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 C 215 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN HIS LEU SEQRES 8 C 215 ASN SER ASN PRO PRO ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 C 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 C 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 C 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 C 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 C 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 C 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 C 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 C 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 C 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 D 194 ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR ARG SEQRES 2 D 194 PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER SEQRES 3 D 194 ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER ALA SEQRES 4 D 194 SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO THR SEQRES 5 D 194 LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SEQRES 6 D 194 SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE ALA SEQRES 7 D 194 PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR LYS SEQRES 8 D 194 LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SEQRES 9 D 194 SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR ASN SEQRES 10 D 194 TYR ARG TYR ARG LEU PHE ARG LYS SER ASN LEU LYS PRO SEQRES 11 D 194 PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY SEQRES 12 D 194 SER LYS PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS TYR SEQRES 13 D 194 PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN GLY SEQRES 14 D 194 VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER PHE SEQRES 15 D 194 GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 1 E 230 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 E 230 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 E 230 PHE ILE VAL SER ARG ASN TYR MET ASN TRP VAL ARG GLN SEQRES 4 E 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA LEU ILE TYR SEQRES 5 E 230 SER GLY GLY SER THR PHE TYR ALA ASP SER VAL LYS GLY SEQRES 6 E 230 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 E 230 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 E 230 VAL TYR TYR CYS ALA ARG ASP LEU VAL VAL TYR GLY LEU SEQRES 9 E 230 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 E 230 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 E 230 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 E 230 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 E 230 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 E 230 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 E 230 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 E 230 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 E 230 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 18 E 230 LYS THR GLY HIS HIS HIS HIS HIS HIS SEQRES 1 F 215 ALA ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 F 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 F 215 GLN GLY ILE SER SER HIS LEU ALA TRP TYR GLN GLN LYS SEQRES 4 F 215 PRO GLY LYS ALA PRO LYS LEU LEU ILE PHE ALA ALA SER SEQRES 5 F 215 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 F 215 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 F 215 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN HIS LEU SEQRES 8 F 215 ASN SER ASN PRO PRO ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 F 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 F 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 F 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 F 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 F 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 F 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 F 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 F 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 F 215 SER PHE ASN ARG GLY GLU CYS HET NAG R 601 14 HET NAG A 601 14 HET NAG D 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 10 NAG 3(C8 H15 N O6) FORMUL 13 HOH *296(H2 O) HELIX 1 AA1 PRO R 337 ASN R 343 1 7 HELIX 2 AA2 TYR R 365 ASN R 370 1 6 HELIX 3 AA3 LYS R 386 ASP R 389 5 4 HELIX 4 AA4 ASP R 405 ILE R 410 5 6 HELIX 5 AA5 GLY R 416 ASN R 422 1 7 HELIX 6 AA6 SER R 438 SER R 443 1 6 HELIX 7 AA7 GLY R 502 TYR R 505 5 4 HELIX 8 AA8 ILE H 28 ASN H 32 5 5 HELIX 9 AA9 ASP H 61 LYS H 64 5 4 HELIX 10 AB1 ARG H 86 THR H 90 5 5 HELIX 11 AB2 VAL H 100 TYR H 102 5 3 HELIX 12 AB3 SER H 160 ALA H 162 5 3 HELIX 13 AB4 SER H 191 LEU H 193 5 3 HELIX 14 AB5 LYS H 205 ASN H 208 5 4 HELIX 15 AB6 GLN L 79 PHE L 83 5 5 HELIX 16 AB7 SER L 122 GLY L 129 1 8 HELIX 17 AB8 LYS L 184 LYS L 189 1 6 HELIX 18 AB9 PRO A 337 ASN A 343 1 7 HELIX 19 AC1 TYR A 365 ASN A 370 1 6 HELIX 20 AC2 THR A 385 ASP A 389 5 5 HELIX 21 AC3 ASP A 405 ILE A 410 5 6 HELIX 22 AC4 GLY A 416 ASN A 422 1 7 HELIX 23 AC5 SER A 438 SER A 443 1 6 HELIX 24 AC6 GLY A 502 TYR A 505 5 4 HELIX 25 AC7 ILE B 28 ASN B 32 5 5 HELIX 26 AC8 ARG B 86 THR B 90 5 5 HELIX 27 AC9 VAL B 100 TYR B 102 5 3 HELIX 28 AD1 SER B 160 ALA B 162 5 3 HELIX 29 AD2 SER B 191 THR B 195 5 5 HELIX 30 AD3 LYS B 205 ASN B 208 5 4 HELIX 31 AD4 GLN C 79 PHE C 83 5 5 HELIX 32 AD5 SER C 122 SER C 128 1 7 HELIX 33 AD6 LYS C 184 LYS C 189 1 6 HELIX 34 AD7 PRO D 337 ASN D 343 1 7 HELIX 35 AD8 SER D 349 TRP D 353 5 5 HELIX 36 AD9 TYR D 365 ASN D 370 1 6 HELIX 37 AE1 LYS D 386 LEU D 390 5 5 HELIX 38 AE2 ASP D 405 ILE D 410 5 6 HELIX 39 AE3 GLY D 416 ASN D 422 1 7 HELIX 40 AE4 SER D 438 SER D 443 1 6 HELIX 41 AE5 GLY D 502 TYR D 505 5 4 HELIX 42 AE6 ILE E 28 ASN E 32 5 5 HELIX 43 AE7 ASP E 61 LYS E 64 5 4 HELIX 44 AE8 ARG E 86 THR E 90 5 5 HELIX 45 AE9 SER E 160 ALA E 162 5 3 HELIX 46 AF1 PRO E 189 GLY E 194 5 6 HELIX 47 AF2 LYS E 205 ASN E 208 5 4 HELIX 48 AF3 GLN F 79 PHE F 83 5 5 HELIX 49 AF4 SER F 122 SER F 128 1 7 HELIX 50 AF5 LYS F 184 LYS F 189 1 6 SHEET 1 AA1 5 ASN R 354 ILE R 358 0 SHEET 2 AA1 5 ASN R 394 ARG R 403 -1 O VAL R 395 N ILE R 358 SHEET 3 AA1 5 PRO R 507 GLU R 516 -1 O TYR R 508 N ILE R 402 SHEET 4 AA1 5 GLY R 431 ASN R 437 -1 N ILE R 434 O VAL R 511 SHEET 5 AA1 5 THR R 376 TYR R 380 -1 N TYR R 380 O GLY R 431 SHEET 1 AA2 3 CYS R 361 VAL R 362 0 SHEET 2 AA2 3 VAL R 524 CYS R 525 1 O CYS R 525 N CYS R 361 SHEET 3 AA2 3 CYS R 391 PHE R 392 -1 N PHE R 392 O VAL R 524 SHEET 1 AA3 2 ARG R 452 ARG R 454 0 SHEET 2 AA3 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SHEET 1 AA4 2 TYR R 473 GLN R 474 0 SHEET 2 AA4 2 CYS R 488 TYR R 489 -1 O TYR R 489 N TYR R 473 SHEET 1 AA5 4 GLN H 3 SER H 7 0 SHEET 2 AA5 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA5 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA5 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA6 6 GLY H 10 ILE H 12 0 SHEET 2 AA6 6 THR H 111 VAL H 115 1 O THR H 114 N GLY H 10 SHEET 3 AA6 6 ALA H 91 ASP H 98 -1 N ALA H 91 O VAL H 113 SHEET 4 AA6 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA6 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA6 6 THR H 57 TYR H 59 -1 O PHE H 58 N LEU H 50 SHEET 1 AA7 4 GLY H 10 ILE H 12 0 SHEET 2 AA7 4 THR H 111 VAL H 115 1 O THR H 114 N GLY H 10 SHEET 3 AA7 4 ALA H 91 ASP H 98 -1 N ALA H 91 O VAL H 113 SHEET 4 AA7 4 LEU H 104 TRP H 107 -1 O TYR H 106 N ARG H 97 SHEET 1 AA8 4 SER H 124 LEU H 128 0 SHEET 2 AA8 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA8 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AA8 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AA9 4 SER H 124 LEU H 128 0 SHEET 2 AA9 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA9 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AA9 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AB1 3 THR H 155 TRP H 158 0 SHEET 2 AB1 3 ILE H 199 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AB1 3 THR H 209 ARG H 214 -1 O VAL H 211 N VAL H 202 SHEET 1 AB2 4 LEU L 4 SER L 7 0 SHEET 2 AB2 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB2 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AB2 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB3 6 SER L 10 SER L 14 0 SHEET 2 AB3 6 THR L 103 LYS L 108 1 O GLU L 106 N LEU L 11 SHEET 3 AB3 6 ALA L 84 HIS L 90 -1 N ALA L 84 O LEU L 105 SHEET 4 AB3 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB3 6 LYS L 45 PHE L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB3 6 THR L 53 LEU L 54 -1 O THR L 53 N PHE L 49 SHEET 1 AB4 4 SER L 115 PHE L 119 0 SHEET 2 AB4 4 THR L 130 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB4 4 TYR L 174 SER L 183 -1 O LEU L 176 N LEU L 137 SHEET 4 AB4 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB5 4 ALA L 154 LEU L 155 0 SHEET 2 AB5 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB5 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB5 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SHEET 1 AB6 5 ASN A 354 ILE A 358 0 SHEET 2 AB6 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AB6 5 PRO A 507 GLU A 516 -1 O SER A 514 N TYR A 396 SHEET 4 AB6 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AB6 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AB7 3 CYS A 361 VAL A 362 0 SHEET 2 AB7 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AB7 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AB8 2 ARG A 452 ARG A 454 0 SHEET 2 AB8 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AB9 2 TYR A 473 GLN A 474 0 SHEET 2 AB9 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AC1 4 GLN B 3 SER B 7 0 SHEET 2 AC1 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 AC1 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AC1 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 AC2 6 LEU B 11 ILE B 12 0 SHEET 2 AC2 6 THR B 111 VAL B 115 1 O THR B 114 N ILE B 12 SHEET 3 AC2 6 ALA B 91 ASP B 98 -1 N ALA B 91 O VAL B 113 SHEET 4 AC2 6 TYR B 33 GLN B 39 -1 N VAL B 37 O TYR B 94 SHEET 5 AC2 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AC2 6 THR B 57 TYR B 59 -1 O PHE B 58 N LEU B 50 SHEET 1 AC3 4 LEU B 11 ILE B 12 0 SHEET 2 AC3 4 THR B 111 VAL B 115 1 O THR B 114 N ILE B 12 SHEET 3 AC3 4 ALA B 91 ASP B 98 -1 N ALA B 91 O VAL B 113 SHEET 4 AC3 4 LEU B 104 TRP B 107 -1 O TYR B 106 N ARG B 97 SHEET 1 AC4 4 SER B 124 LEU B 128 0 SHEET 2 AC4 4 THR B 139 TYR B 149 -1 O LEU B 145 N PHE B 126 SHEET 3 AC4 4 TYR B 180 PRO B 189 -1 O TYR B 180 N TYR B 149 SHEET 4 AC4 4 VAL B 167 THR B 169 -1 N HIS B 168 O VAL B 185 SHEET 1 AC5 4 SER B 124 LEU B 128 0 SHEET 2 AC5 4 THR B 139 TYR B 149 -1 O LEU B 145 N PHE B 126 SHEET 3 AC5 4 TYR B 180 PRO B 189 -1 O TYR B 180 N TYR B 149 SHEET 4 AC5 4 VAL B 173 LEU B 174 -1 N VAL B 173 O SER B 181 SHEET 1 AC6 3 THR B 155 TRP B 158 0 SHEET 2 AC6 3 TYR B 198 HIS B 204 -1 O ASN B 201 N SER B 157 SHEET 3 AC6 3 THR B 209 VAL B 215 -1 O THR B 209 N HIS B 204 SHEET 1 AC7 4 LEU C 4 SER C 7 0 SHEET 2 AC7 4 VAL C 19 ALA C 25 -1 O THR C 22 N SER C 7 SHEET 3 AC7 4 ASP C 70 ILE C 75 -1 O ILE C 75 N VAL C 19 SHEET 4 AC7 4 PHE C 62 SER C 67 -1 N SER C 63 O THR C 74 SHEET 1 AC8 6 SER C 10 SER C 14 0 SHEET 2 AC8 6 THR C 103 LYS C 108 1 O GLU C 106 N LEU C 11 SHEET 3 AC8 6 ALA C 84 HIS C 90 -1 N ALA C 84 O LEU C 105 SHEET 4 AC8 6 LEU C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 AC8 6 LYS C 45 PHE C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 AC8 6 THR C 53 LEU C 54 -1 O THR C 53 N PHE C 49 SHEET 1 AC9 4 SER C 10 SER C 14 0 SHEET 2 AC9 4 THR C 103 LYS C 108 1 O GLU C 106 N LEU C 11 SHEET 3 AC9 4 ALA C 84 HIS C 90 -1 N ALA C 84 O LEU C 105 SHEET 4 AC9 4 THR C 98 PHE C 99 -1 O THR C 98 N HIS C 90 SHEET 1 AD1 4 SER C 115 PHE C 119 0 SHEET 2 AD1 4 THR C 130 PHE C 140 -1 O LEU C 136 N PHE C 117 SHEET 3 AD1 4 TYR C 174 SER C 183 -1 O LEU C 176 N LEU C 137 SHEET 4 AD1 4 SER C 160 VAL C 164 -1 N GLN C 161 O THR C 179 SHEET 1 AD2 4 ALA C 154 LEU C 155 0 SHEET 2 AD2 4 LYS C 146 VAL C 151 -1 N VAL C 151 O ALA C 154 SHEET 3 AD2 4 VAL C 192 THR C 198 -1 O GLU C 196 N GLN C 148 SHEET 4 AD2 4 VAL C 206 ASN C 211 -1 O VAL C 206 N VAL C 197 SHEET 1 AD3 5 ASN D 354 ILE D 358 0 SHEET 2 AD3 5 ASN D 394 ARG D 403 -1 O VAL D 395 N ILE D 358 SHEET 3 AD3 5 PRO D 507 GLU D 516 -1 O VAL D 512 N ASP D 398 SHEET 4 AD3 5 GLY D 431 ASN D 437 -1 N ILE D 434 O VAL D 511 SHEET 5 AD3 5 THR D 376 CYS D 379 -1 N LYS D 378 O VAL D 433 SHEET 1 AD4 2 CYS D 361 VAL D 362 0 SHEET 2 AD4 2 VAL D 524 CYS D 525 1 O CYS D 525 N CYS D 361 SHEET 1 AD5 2 ARG D 452 ARG D 454 0 SHEET 2 AD5 2 LEU D 492 SER D 494 -1 O GLN D 493 N TYR D 453 SHEET 1 AD6 2 TYR D 473 GLN D 474 0 SHEET 2 AD6 2 CYS D 488 TYR D 489 -1 O TYR D 489 N TYR D 473 SHEET 1 AD7 4 GLN E 3 SER E 7 0 SHEET 2 AD7 4 LEU E 18 SER E 25 -1 O ALA E 23 N VAL E 5 SHEET 3 AD7 4 THR E 77 MET E 82 -1 O MET E 82 N LEU E 18 SHEET 4 AD7 4 PHE E 67 ASP E 72 -1 N SER E 70 O TYR E 79 SHEET 1 AD8 6 GLY E 10 ILE E 12 0 SHEET 2 AD8 6 THR E 111 VAL E 115 1 O THR E 114 N ILE E 12 SHEET 3 AD8 6 ALA E 91 ASP E 98 -1 N ALA E 91 O VAL E 113 SHEET 4 AD8 6 TYR E 33 GLN E 39 -1 N VAL E 37 O TYR E 94 SHEET 5 AD8 6 LEU E 45 ILE E 51 -1 O GLU E 46 N ARG E 38 SHEET 6 AD8 6 THR E 57 TYR E 59 -1 O PHE E 58 N LEU E 50 SHEET 1 AD9 4 GLY E 10 ILE E 12 0 SHEET 2 AD9 4 THR E 111 VAL E 115 1 O THR E 114 N ILE E 12 SHEET 3 AD9 4 ALA E 91 ASP E 98 -1 N ALA E 91 O VAL E 113 SHEET 4 AD9 4 LEU E 104 TRP E 107 -1 O TYR E 106 N ARG E 97 SHEET 1 AE1 4 SER E 124 LEU E 128 0 SHEET 2 AE1 4 ALA E 140 TYR E 149 -1 O LEU E 145 N PHE E 126 SHEET 3 AE1 4 TYR E 180 VAL E 188 -1 O TYR E 180 N TYR E 149 SHEET 4 AE1 4 VAL E 167 THR E 169 -1 N HIS E 168 O VAL E 185 SHEET 1 AE2 4 SER E 124 LEU E 128 0 SHEET 2 AE2 4 ALA E 140 TYR E 149 -1 O LEU E 145 N PHE E 126 SHEET 3 AE2 4 TYR E 180 VAL E 188 -1 O TYR E 180 N TYR E 149 SHEET 4 AE2 4 VAL E 173 LEU E 174 -1 N VAL E 173 O SER E 181 SHEET 1 AE3 3 THR E 155 TRP E 158 0 SHEET 2 AE3 3 ILE E 199 HIS E 204 -1 O ASN E 201 N SER E 157 SHEET 3 AE3 3 THR E 209 ARG E 214 -1 O THR E 209 N HIS E 204 SHEET 1 AE4 4 LEU F 4 GLN F 6 0 SHEET 2 AE4 4 CYS F 23 ALA F 25 -1 O ARG F 24 N THR F 5 SHEET 3 AE4 4 ASP F 70 ILE F 75 -1 O PHE F 71 N CYS F 23 SHEET 4 AE4 4 VAL F 19 THR F 20 -1 N VAL F 19 O ILE F 75 SHEET 1 AE5 4 LEU F 4 GLN F 6 0 SHEET 2 AE5 4 CYS F 23 ALA F 25 -1 O ARG F 24 N THR F 5 SHEET 3 AE5 4 ASP F 70 ILE F 75 -1 O PHE F 71 N CYS F 23 SHEET 4 AE5 4 PHE F 62 GLY F 66 -1 N SER F 63 O THR F 74 SHEET 1 AE6 6 SER F 10 ALA F 13 0 SHEET 2 AE6 6 THR F 103 ILE F 107 1 O ARG F 104 N LEU F 11 SHEET 3 AE6 6 ALA F 84 HIS F 90 -1 N ALA F 84 O LEU F 105 SHEET 4 AE6 6 LEU F 33 GLN F 38 -1 N TYR F 36 O TYR F 87 SHEET 5 AE6 6 LYS F 45 PHE F 49 -1 O LEU F 47 N TRP F 35 SHEET 6 AE6 6 THR F 53 LEU F 54 -1 O THR F 53 N PHE F 49 SHEET 1 AE7 4 SER F 115 PHE F 119 0 SHEET 2 AE7 4 THR F 130 PHE F 140 -1 O LEU F 136 N PHE F 117 SHEET 3 AE7 4 TYR F 174 SER F 183 -1 O LEU F 176 N LEU F 137 SHEET 4 AE7 4 SER F 160 VAL F 164 -1 N GLN F 161 O THR F 179 SHEET 1 AE8 4 ALA F 154 GLN F 156 0 SHEET 2 AE8 4 LYS F 146 VAL F 151 -1 N TRP F 149 O GLN F 156 SHEET 3 AE8 4 VAL F 192 THR F 198 -1 O GLU F 196 N GLN F 148 SHEET 4 AE8 4 VAL F 206 ASN F 211 -1 O VAL F 206 N VAL F 197 SSBOND 1 CYS R 336 CYS R 361 1555 1555 2.04 SSBOND 2 CYS R 379 CYS R 432 1555 1555 2.10 SSBOND 3 CYS R 391 CYS R 525 1555 1555 2.05 SSBOND 4 CYS R 480 CYS R 488 1555 1555 2.08 SSBOND 5 CYS H 22 CYS H 95 1555 1555 2.07 SSBOND 6 CYS H 144 CYS H 200 1555 1555 2.05 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.12 SSBOND 8 CYS L 135 CYS L 195 1555 1555 2.05 SSBOND 9 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 10 CYS A 379 CYS A 432 1555 1555 2.06 SSBOND 11 CYS A 391 CYS A 525 1555 1555 2.04 SSBOND 12 CYS A 480 CYS A 488 1555 1555 2.08 SSBOND 13 CYS B 22 CYS B 95 1555 1555 2.06 SSBOND 14 CYS B 144 CYS B 200 1555 1555 2.04 SSBOND 15 CYS C 23 CYS C 88 1555 1555 2.10 SSBOND 16 CYS C 135 CYS C 195 1555 1555 2.05 SSBOND 17 CYS D 336 CYS D 361 1555 1555 2.05 SSBOND 18 CYS D 379 CYS D 432 1555 1555 2.07 SSBOND 19 CYS D 391 CYS D 525 1555 1555 2.06 SSBOND 20 CYS D 480 CYS D 488 1555 1555 2.06 SSBOND 21 CYS E 22 CYS E 95 1555 1555 2.06 SSBOND 22 CYS E 144 CYS E 200 1555 1555 2.04 SSBOND 23 CYS F 23 CYS F 88 1555 1555 2.17 SSBOND 24 CYS F 135 CYS F 195 1555 1555 2.02 LINK ND2 ASN R 343 C1 NAG R 601 1555 1555 1.45 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN D 343 C1 NAG D 601 1555 1555 1.44 CISPEP 1 PHE H 150 PRO H 151 0 -4.12 CISPEP 2 GLU H 152 PRO H 153 0 -0.08 CISPEP 3 SER L 7 PRO L 8 0 -3.08 CISPEP 4 TYR L 141 PRO L 142 0 5.90 CISPEP 5 PHE B 150 PRO B 151 0 -3.31 CISPEP 6 GLU B 152 PRO B 153 0 -1.35 CISPEP 7 SER C 7 PRO C 8 0 8.77 CISPEP 8 TYR C 141 PRO C 142 0 1.09 CISPEP 9 PHE E 150 PRO E 151 0 -2.57 CISPEP 10 GLU E 152 PRO E 153 0 -3.32 CISPEP 11 SER F 7 PRO F 8 0 -7.72 CISPEP 12 PRO F 95 PRO F 96 0 -1.44 CISPEP 13 TYR F 141 PRO F 142 0 2.99 CRYST1 88.805 113.730 272.243 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003673 0.00000