HEADER SIGNALING PROTEIN 26-JAN-23 8I5W TITLE CRYSTAL STRUCTURE OF THE DHR-2 DOMAIN OF DOCK10 IN COMPLEX WITH RAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEDICATOR OF CYTOKINESIS PROTEIN 10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZIZIMIN-3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CELL MIGRATION-INDUCING GENE 5 PROTEIN,RAS-LIKE PROTEIN COMPND 10 TC25,P21-RAC1; COMPND 11 EC: 3.6.5.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DOCK10, KIAA0694, ZIZ3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: CELL-FREE PROTEIN SYNTHESIS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: RAC1, TC25, MIG5; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_CELL: CELL-FREE PROTEIN SYNTHESIS KEYWDS DOCK, GEF, DHR-2, GTPASE, RHO, RAC, CDC42, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KUKIMOTO-NIINO,C.MISHIMA-TSUMAGARI,K.IHARA,Y.FUKUI,S.YOKOYAMA, AUTHOR 2 M.SHIROUZU REVDAT 1 15-MAR-23 8I5W 0 JRNL AUTH M.KUKIMOTO-NIINO,K.IHARA,C.MISHIMA-TSUMAGARI,M.INOUE, JRNL AUTH 2 Y.FUKUI,S.YOKOYAMA,M.SHIROUZU JRNL TITL STRUCTURAL BASIS FOR THE DUAL GTPASE SPECIFICITY OF THE JRNL TITL 2 DOCK10 GUANINE NUCLEOTIDE EXCHANGE FACTOR. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 653 12 2023 JRNL REFN ESSN 1090-2104 JRNL PMID 36848820 JRNL DOI 10.1016/J.BBRC.2023.02.054 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.720 REMARK 3 FREE R VALUE TEST SET COUNT : 3815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7780 - 7.2862 1.00 1474 158 0.3302 0.3810 REMARK 3 2 7.2862 - 5.7867 1.00 1480 149 0.2430 0.2358 REMARK 3 3 5.7867 - 5.0562 1.00 1459 142 0.1950 0.2703 REMARK 3 4 5.0562 - 4.5944 1.00 1498 143 0.1672 0.1738 REMARK 3 5 4.5944 - 4.2653 1.00 1468 161 0.1798 0.2896 REMARK 3 6 4.2653 - 4.0140 1.00 1481 136 0.1769 0.2247 REMARK 3 7 4.0140 - 3.8131 0.99 1456 147 0.2055 0.2473 REMARK 3 8 3.8131 - 3.6471 1.00 1492 133 0.1940 0.2485 REMARK 3 9 3.6471 - 3.5068 1.00 1498 136 0.1920 0.2296 REMARK 3 10 3.5068 - 3.3858 1.00 1465 136 0.1944 0.2872 REMARK 3 11 3.3858 - 3.2800 1.00 1507 139 0.1966 0.2231 REMARK 3 12 3.2800 - 3.1862 1.00 1488 134 0.2111 0.2858 REMARK 3 13 3.1862 - 3.1024 1.00 1504 142 0.2003 0.3100 REMARK 3 14 3.1024 - 3.0267 1.00 1454 138 0.2142 0.2466 REMARK 3 15 3.0267 - 2.9579 1.00 1499 143 0.2188 0.3116 REMARK 3 16 2.9579 - 2.8950 1.00 1455 138 0.2378 0.3970 REMARK 3 17 2.8950 - 2.8371 1.00 1520 141 0.2325 0.3031 REMARK 3 18 2.8371 - 2.7835 1.00 1439 151 0.2446 0.2970 REMARK 3 19 2.7835 - 2.7338 1.00 1494 127 0.2491 0.3303 REMARK 3 20 2.7338 - 2.6875 1.00 1481 152 0.2465 0.3600 REMARK 3 21 2.6875 - 2.6441 1.00 1507 142 0.2634 0.3146 REMARK 3 22 2.6441 - 2.6035 1.00 1497 139 0.2490 0.3050 REMARK 3 23 2.6035 - 2.5652 1.00 1449 134 0.2406 0.3035 REMARK 3 24 2.5652 - 2.5291 1.00 1475 153 0.2534 0.2978 REMARK 3 25 2.5291 - 2.4949 1.00 1485 138 0.2715 0.3739 REMARK 3 26 2.4949 - 2.4625 1.00 1496 131 0.2960 0.3738 REMARK 3 27 2.4625 - 2.4320 0.97 1415 132 0.3034 0.3382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3719 REMARK 3 ANGLE : 0.851 5026 REMARK 3 CHIRALITY : 0.050 559 REMARK 3 PLANARITY : 0.006 649 REMARK 3 DIHEDRAL : 15.672 2276 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 6.3510 28.8533 -22.8260 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1206 REMARK 3 T33: 0.1317 T12: -0.0076 REMARK 3 T13: 0.0014 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.1701 L22: 0.1301 REMARK 3 L33: 0.1705 L12: -0.0974 REMARK 3 L13: -0.1837 L23: -0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.0085 S13: 0.0109 REMARK 3 S21: 0.0326 S22: -0.0193 S23: 0.0023 REMARK 3 S31: -0.0152 S32: -0.0064 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300034773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8I5F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CACODYLATE, REMARK 280 PEG 8000, GLYCEROL, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.14000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.14000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.55500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.14000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.43000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.55500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.14000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.43000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2257 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1869 REMARK 465 SER A 1870 REMARK 465 SER A 1871 REMARK 465 GLY A 1872 REMARK 465 SER A 1873 REMARK 465 SER A 1874 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 1898 O HOH A 2201 1.86 REMARK 500 OE1 GLN A 2093 O HOH A 2202 1.90 REMARK 500 OG1 THR A 1950 O HOH A 2203 1.91 REMARK 500 OD1 ASP A 1931 O HOH A 2204 1.92 REMARK 500 O HOH A 2219 O HOH A 2256 1.97 REMARK 500 O HOH B 536 O HOH B 543 2.01 REMARK 500 NH1 ARG B 163 O HOH B 501 2.04 REMARK 500 O HOH A 2218 O HOH A 2287 2.05 REMARK 500 O HOH A 2271 O HOH A 2290 2.07 REMARK 500 O HOH A 2272 O HOH A 2282 2.08 REMARK 500 O HOH A 2284 O HOH A 2286 2.08 REMARK 500 O HOH A 2236 O HOH A 2252 2.11 REMARK 500 O HOH B 532 O HOH B 546 2.13 REMARK 500 O HOH A 2294 O HOH A 2295 2.15 REMARK 500 O HOH A 2265 O HOH A 2281 2.16 REMARK 500 O ASP B 38 O HOH B 502 2.18 REMARK 500 OH TYR B 23 O HOH B 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2238 O HOH A 2266 3554 1.92 REMARK 500 O HOH A 2274 O HOH A 2278 3554 1.98 REMARK 500 O HOH A 2249 O HOH A 2285 1655 2.03 REMARK 500 NE2 GLN A 2021 OG SER A 2023 3554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1887 -63.49 -133.48 REMARK 500 GLU A1889 -99.48 -123.23 REMARK 500 LEU A1903 19.86 56.76 REMARK 500 LYS A1965 -66.65 -104.41 REMARK 500 SER A2066 45.21 -152.77 REMARK 500 ASN A2146 28.74 47.02 REMARK 500 ASN B 39 158.91 73.29 REMARK 500 LYS B 96 -55.56 -137.18 REMARK 500 HIS B 103 -1.94 -58.33 REMARK 500 HIS B 104 -35.53 -136.36 REMARK 500 GLN B 162 -4.98 71.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 547 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 548 DISTANCE = 7.40 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8I5F RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CDC42 REMARK 900 RELATED ID: 8I5V RELATED DB: PDB REMARK 900 THE SAME COMPLEX WITH L1903Y MUTATION IN DOCK10 DBREF 8I5W A 1875 2150 UNP Q8BZN6 DOC10_MOUSE 1875 2150 DBREF 8I5W B 1 177 UNP P63000 RAC1_HUMAN 1 177 SEQADV 8I5W GLY A 1869 UNP Q8BZN6 EXPRESSION TAG SEQADV 8I5W SER A 1870 UNP Q8BZN6 EXPRESSION TAG SEQADV 8I5W SER A 1871 UNP Q8BZN6 EXPRESSION TAG SEQADV 8I5W GLY A 1872 UNP Q8BZN6 EXPRESSION TAG SEQADV 8I5W SER A 1873 UNP Q8BZN6 EXPRESSION TAG SEQADV 8I5W SER A 1874 UNP Q8BZN6 EXPRESSION TAG SEQADV 8I5W GLY B -6 UNP P63000 EXPRESSION TAG SEQADV 8I5W SER B -5 UNP P63000 EXPRESSION TAG SEQADV 8I5W SER B -4 UNP P63000 EXPRESSION TAG SEQADV 8I5W GLY B -3 UNP P63000 EXPRESSION TAG SEQADV 8I5W SER B -2 UNP P63000 EXPRESSION TAG SEQADV 8I5W SER B -1 UNP P63000 EXPRESSION TAG SEQADV 8I5W GLY B 0 UNP P63000 EXPRESSION TAG SEQRES 1 A 282 GLY SER SER GLY SER SER GLY ARG TYR TYR ARG VAL ALA SEQRES 2 A 282 PHE TYR GLY GLN GLY PHE PHE GLU GLU GLU GLU GLY LYS SEQRES 3 A 282 GLU TYR ILE TYR LYS GLU PRO LYS LEU THR GLY LEU SER SEQRES 4 A 282 GLU ILE SER GLN ARG LEU LEU LYS LEU TYR ALA ASP LYS SEQRES 5 A 282 PHE GLY ALA ASP ASN VAL LYS ILE ILE GLN ASP SER ASN SEQRES 6 A 282 LYS VAL ASN PRO LYS ASP LEU ASP PRO LYS TYR ALA TYR SEQRES 7 A 282 ILE GLN VAL THR TYR VAL THR PRO PHE PHE GLU GLU LYS SEQRES 8 A 282 GLU ILE GLU ASP ARG LYS THR ASP PHE GLU MET HIS HIS SEQRES 9 A 282 ASN ILE ASN ARG PHE VAL PHE GLU THR PRO PHE THR LEU SEQRES 10 A 282 SER GLY LYS LYS HIS GLY GLY VAL ALA GLU GLN CYS LYS SEQRES 11 A 282 ARG ARG THR VAL LEU THR THR SER HIS LEU PHE PRO TYR SEQRES 12 A 282 VAL LYS LYS ARG ILE GLN VAL ILE SER GLN SER SER THR SEQRES 13 A 282 GLU LEU ASN PRO ILE GLU VAL ALA ILE ASP GLU MET SER SEQRES 14 A 282 ARG LYS VAL SER GLU LEU ASN GLN LEU CYS THR THR GLU SEQRES 15 A 282 GLU VAL ASP MET ILE ARG LEU GLN LEU LYS LEU GLN GLY SEQRES 16 A 282 SER VAL SER VAL LYS VAL ASN ALA GLY PRO MET ALA TYR SEQRES 17 A 282 ALA ARG ALA PHE LEU GLU GLU THR ASN ALA LYS LYS TYR SEQRES 18 A 282 PRO ASP ASN GLN VAL LYS LEU LEU LYS GLU ILE PHE ARG SEQRES 19 A 282 GLN PHE ALA ASP ALA CYS GLY GLN ALA LEU ASP VAL ASN SEQRES 20 A 282 GLU ARG LEU ILE LYS GLU ASP GLN LEU GLU TYR GLN GLU SEQRES 21 A 282 GLU LEU ARG SER HIS TYR LYS ASP MET LEU SER GLU LEU SEQRES 22 A 282 SER ALA ILE MET ASN GLU GLN ILE THR SEQRES 1 B 184 GLY SER SER GLY SER SER GLY MET GLN ALA ILE LYS CYS SEQRES 2 B 184 VAL VAL VAL GLY ASP GLY ALA VAL GLY LYS THR CYS LEU SEQRES 3 B 184 LEU ILE SER TYR THR THR ASN ALA PHE PRO GLY GLU TYR SEQRES 4 B 184 ILE PRO THR VAL PHE ASP ASN TYR SER ALA ASN VAL MET SEQRES 5 B 184 VAL ASP GLY LYS PRO VAL ASN LEU GLY LEU TRP ASP THR SEQRES 6 B 184 ALA GLY GLN GLU ASP TYR ASP ARG LEU ARG PRO LEU SER SEQRES 7 B 184 TYR PRO GLN THR ASP VAL PHE LEU ILE CYS PHE SER LEU SEQRES 8 B 184 VAL SER PRO ALA SER PHE GLU ASN VAL ARG ALA LYS TRP SEQRES 9 B 184 TYR PRO GLU VAL ARG HIS HIS CYS PRO ASN THR PRO ILE SEQRES 10 B 184 ILE LEU VAL GLY THR LYS LEU ASP LEU ARG ASP ASP LYS SEQRES 11 B 184 ASP THR ILE GLU LYS LEU LYS GLU LYS LYS LEU THR PRO SEQRES 12 B 184 ILE THR TYR PRO GLN GLY LEU ALA MET ALA LYS GLU ILE SEQRES 13 B 184 GLY ALA VAL LYS TYR LEU GLU CYS SER ALA LEU THR GLN SEQRES 14 B 184 ARG GLY LEU LYS THR VAL PHE ASP GLU ALA ILE ARG ALA SEQRES 15 B 184 VAL LEU HET SO4 B 401 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *144(H2 O) HELIX 1 AA1 GLY A 1905 GLY A 1922 1 18 HELIX 2 AA2 ASN A 1936 LEU A 1940 5 5 HELIX 3 AA3 GLU A 1957 ARG A 1964 1 8 HELIX 4 AA4 THR A 1966 HIS A 1971 1 6 HELIX 5 AA5 ASN A 2027 THR A 2049 1 23 HELIX 6 AA6 ASP A 2053 SER A 2066 1 14 HELIX 7 AA7 PRO A 2073 LEU A 2081 1 9 HELIX 8 AA8 PRO A 2090 ILE A 2119 1 30 HELIX 9 AA9 LYS A 2120 ASP A 2122 5 3 HELIX 10 AB1 GLN A 2123 ASN A 2146 1 24 HELIX 11 AB2 GLY B 15 ASN B 26 1 12 HELIX 12 AB3 PHE B 28 TYR B 32 5 5 HELIX 13 AB4 GLN B 61 ASP B 65 5 5 HELIX 14 AB5 LEU B 67 TYR B 72 5 6 HELIX 15 AB6 SER B 86 LYS B 96 1 11 HELIX 16 AB7 LYS B 96 HIS B 103 1 8 HELIX 17 AB8 LYS B 116 ARG B 120 5 5 HELIX 18 AB9 ASP B 122 LYS B 132 1 11 HELIX 19 AC1 THR B 138 ILE B 149 1 12 HELIX 20 AC2 GLY B 164 ALA B 175 1 12 SHEET 1 AA1 8 VAL A1926 ILE A1929 0 SHEET 2 AA1 8 ALA A1945 PRO A1954 1 O ILE A1947 N ILE A1929 SHEET 3 AA1 8 ILE A1974 PHE A1983 -1 O VAL A1978 N THR A1953 SHEET 4 AA1 8 CYS A1997 PHE A2009 -1 O LEU A2003 N PHE A1977 SHEET 5 AA1 8 ARG A2015 LEU A2026 -1 O SER A2022 N VAL A2002 SHEET 6 AA1 8 GLU A1895 GLU A1900 -1 N GLU A1895 O VAL A2018 SHEET 7 AA1 8 ARG A1876 TYR A1883 -1 N ARG A1876 O GLU A1900 SHEET 8 AA1 8 ALA A1945 PRO A1954 -1 O THR A1950 N ARG A1879 SHEET 1 AA2 6 TYR B 40 VAL B 46 0 SHEET 2 AA2 6 LYS B 49 ASP B 57 -1 O LEU B 55 N TYR B 40 SHEET 3 AA2 6 ALA B 3 VAL B 9 1 N CYS B 6 O TRP B 56 SHEET 4 AA2 6 VAL B 77 SER B 83 1 O CYS B 81 N VAL B 9 SHEET 5 AA2 6 ILE B 110 THR B 115 1 O THR B 115 N PHE B 82 SHEET 6 AA2 6 LYS B 153 GLU B 156 1 O LEU B 155 N GLY B 114 CISPEP 1 PHE A 2009 PRO A 2010 0 -0.97 CRYST1 60.280 106.860 187.110 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005344 0.00000