HEADER PROTEIN BINDING 26-JAN-23 8I60 TITLE CRYSTAL STRUCTURE OF GAS41 YEATS DOMAIN IN COMPLEX WITH HISTONE TITLE 2 H3K27CR COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEATS DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: C, D; COMPND 4 SYNONYM: GLIOMA-AMPLIFIED SEQUENCE 41,GAS41,NUMA-BINDING PROTEIN 1, COMPND 5 NUBI-1,NUBI1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-ARG-KCR-SER-ALA-PRO; COMPND 9 CHAIN: A, B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YEATS4, GAS41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HISTONE H3 LYSINE CROTONYLATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.KONUMA,M.-M.ZHOU REVDAT 1 26-JUL-23 8I60 0 JRNL AUTH N.LIU,T.KONUMA,R.SHARMA,D.WANG,N.ZHAO,L.CAO,Y.JU,D.LIU, JRNL AUTH 2 S.WANG,A.BOSCH,Y.SUN,S.ZHANG,D.JI,S.NAGATOISHI,N.SUZUKI, JRNL AUTH 3 M.KIKUCHI,M.WAKAMORI,C.ZHAO,C.REN,T.J.ZHOU,Y.XU,J.MESLAMANI, JRNL AUTH 4 S.FU,T.UMEHARA,K.TSUMOTO,S.AKASHI,L.ZENG,R.G.ROEDER, JRNL AUTH 5 M.J.WALSH,Q.ZHANG,M.M.ZHOU JRNL TITL HISTONE H3 LYSINE 27 CROTONYLATION MEDIATES GENE JRNL TITL 2 TRANSCRIPTIONAL REPRESSION IN CHROMATIN. JRNL REF MOL.CELL V. 83 2206 2023 JRNL REFN ISSN 1097-2765 JRNL PMID 37311463 JRNL DOI 10.1016/J.MOLCEL.2023.05.022 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.7900 - 4.1800 1.00 2761 142 0.2312 0.2299 REMARK 3 2 4.1800 - 3.3200 1.00 2620 144 0.2241 0.2983 REMARK 3 3 3.3200 - 2.9000 1.00 2576 144 0.2751 0.3013 REMARK 3 4 2.9000 - 2.6300 1.00 2556 138 0.3088 0.3809 REMARK 3 5 2.6300 - 2.4400 1.00 2537 147 0.3254 0.3482 REMARK 3 6 2.4400 - 2.3000 1.00 2546 118 0.3171 0.3543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.351 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.431 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1847 REMARK 3 ANGLE : 1.202 2518 REMARK 3 CHIRALITY : 0.059 281 REMARK 3 PLANARITY : 0.008 322 REMARK 3 DIHEDRAL : 14.296 264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 14 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0529 32.6732 10.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.3110 REMARK 3 T33: 0.3161 T12: 0.0797 REMARK 3 T13: 0.0427 T23: 0.1023 REMARK 3 L TENSOR REMARK 3 L11: 2.9541 L22: 5.9542 REMARK 3 L33: 3.9768 L12: 3.4668 REMARK 3 L13: 1.8790 L23: 3.7399 REMARK 3 S TENSOR REMARK 3 S11: 0.2034 S12: -0.0728 S13: -0.5547 REMARK 3 S21: 0.0174 S22: 0.2387 S23: -0.5948 REMARK 3 S31: -0.3722 S32: -0.1639 S33: -0.4041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 34 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3333 9.5764 11.8631 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.4740 REMARK 3 T33: 0.8707 T12: -0.1693 REMARK 3 T13: 0.1686 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 9.4346 L22: 2.6401 REMARK 3 L33: 5.9291 L12: 4.2793 REMARK 3 L13: 6.1500 L23: 3.5957 REMARK 3 S TENSOR REMARK 3 S11: -1.0347 S12: -0.4358 S13: -2.2956 REMARK 3 S21: 0.3806 S22: -0.8719 S23: 0.2712 REMARK 3 S31: 0.6298 S32: -0.0123 S33: 1.5069 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 45 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9972 24.8061 13.0747 REMARK 3 T TENSOR REMARK 3 T11: 0.2794 T22: 0.1973 REMARK 3 T33: 0.3955 T12: 0.0257 REMARK 3 T13: -0.0726 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.7938 L22: 2.9350 REMARK 3 L33: 4.9739 L12: -1.9171 REMARK 3 L13: -1.0084 L23: 1.8503 REMARK 3 S TENSOR REMARK 3 S11: 0.3154 S12: 0.1159 S13: 0.1759 REMARK 3 S21: 0.4466 S22: 0.2441 S23: -0.7559 REMARK 3 S31: 0.4083 S32: 0.2759 S33: -0.4543 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 70 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5416 23.2704 20.0443 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.8536 REMARK 3 T33: 0.3458 T12: -0.1154 REMARK 3 T13: 0.1377 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.5215 L22: 6.7115 REMARK 3 L33: 2.2511 L12: 1.8354 REMARK 3 L13: -0.1535 L23: 0.2059 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.6399 S13: 0.3054 REMARK 3 S21: 0.2620 S22: 0.1223 S23: 1.0172 REMARK 3 S31: 0.4854 S32: -0.6630 S33: -0.1015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 78 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9502 24.4296 16.3708 REMARK 3 T TENSOR REMARK 3 T11: 0.3556 T22: 0.3126 REMARK 3 T33: 0.3249 T12: -0.0289 REMARK 3 T13: -0.0349 T23: 0.0873 REMARK 3 L TENSOR REMARK 3 L11: 1.5843 L22: 6.0183 REMARK 3 L33: 3.0488 L12: -0.0489 REMARK 3 L13: -0.0526 L23: 1.6126 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0663 S13: -0.1043 REMARK 3 S21: 0.8396 S22: 0.0500 S23: -0.5401 REMARK 3 S31: 0.1592 S32: -0.4185 S33: -0.0459 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 105 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5756 35.5594 16.9376 REMARK 3 T TENSOR REMARK 3 T11: 0.4285 T22: 0.1850 REMARK 3 T33: 0.2685 T12: 0.0384 REMARK 3 T13: -0.0040 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 3.1853 L22: 1.6057 REMARK 3 L33: 2.2424 L12: 0.0613 REMARK 3 L13: 1.0531 L23: 0.1947 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.5477 S13: 0.5296 REMARK 3 S21: 0.3290 S22: 0.2509 S23: -0.2139 REMARK 3 S31: -0.6775 S32: 0.0757 S33: 0.0078 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 118 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4153 26.6431 4.7144 REMARK 3 T TENSOR REMARK 3 T11: 0.3354 T22: 0.4812 REMARK 3 T33: 0.5160 T12: 0.0953 REMARK 3 T13: 0.1719 T23: 0.0894 REMARK 3 L TENSOR REMARK 3 L11: 4.9811 L22: 3.2067 REMARK 3 L33: 4.1350 L12: 2.6014 REMARK 3 L13: 0.7965 L23: 0.2385 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: 0.9283 S13: 0.8277 REMARK 3 S21: -0.8461 S22: 0.2939 S23: 0.3054 REMARK 3 S31: -0.5956 S32: -0.4332 S33: -0.1385 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 147 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.876 42.246 17.921 REMARK 3 T TENSOR REMARK 3 T11: 1.0285 T22: 0.5991 REMARK 3 T33: 0.6037 T12: -0.0165 REMARK 3 T13: -0.2124 T23: 0.4146 REMARK 3 L TENSOR REMARK 3 L11: 0.3214 L22: 0.8264 REMARK 3 L33: 2.7378 L12: -0.5155 REMARK 3 L13: -0.9421 L23: 1.5024 REMARK 3 S TENSOR REMARK 3 S11: 0.3408 S12: -0.3183 S13: -0.2687 REMARK 3 S21: -0.7638 S22: 0.4578 S23: 0.6966 REMARK 3 S31: -0.1536 S32: -0.6405 S33: 0.7547 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 23 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2935 23.3946 -6.0134 REMARK 3 T TENSOR REMARK 3 T11: 0.3172 T22: 0.4175 REMARK 3 T33: 0.3148 T12: -0.0055 REMARK 3 T13: 0.0597 T23: -0.2090 REMARK 3 L TENSOR REMARK 3 L11: 2.9423 L22: 2.7423 REMARK 3 L33: 3.6148 L12: -1.2639 REMARK 3 L13: -1.0912 L23: 0.2878 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.3084 S13: -0.1768 REMARK 3 S21: 0.2172 S22: 0.5780 S23: 0.1856 REMARK 3 S31: 0.1092 S32: 0.9547 S33: -0.1802 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 59 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5939 36.6822 -7.4375 REMARK 3 T TENSOR REMARK 3 T11: 0.9622 T22: 0.7922 REMARK 3 T33: 0.6632 T12: -0.4758 REMARK 3 T13: 0.2562 T23: -0.1631 REMARK 3 L TENSOR REMARK 3 L11: 1.8082 L22: 0.5470 REMARK 3 L33: 6.0348 L12: -0.4960 REMARK 3 L13: 0.1552 L23: 1.5167 REMARK 3 S TENSOR REMARK 3 S11: 0.8351 S12: -0.6337 S13: 0.8682 REMARK 3 S21: -0.2110 S22: 0.4408 S23: -0.9220 REMARK 3 S31: 0.0159 S32: 1.1993 S33: -0.2638 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 70 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8157 25.5883 -15.0130 REMARK 3 T TENSOR REMARK 3 T11: 0.4970 T22: 0.4736 REMARK 3 T33: 0.2954 T12: -0.0109 REMARK 3 T13: -0.0424 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.4368 L22: 7.9212 REMARK 3 L33: 8.0084 L12: -0.7039 REMARK 3 L13: -1.3799 L23: 3.4162 REMARK 3 S TENSOR REMARK 3 S11: 0.1849 S12: 0.4715 S13: 0.2102 REMARK 3 S21: -1.1007 S22: -0.2042 S23: 0.5432 REMARK 3 S31: -1.2543 S32: 0.6552 S33: -0.0096 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 124 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5706 7.7019 -6.4186 REMARK 3 T TENSOR REMARK 3 T11: 0.4032 T22: 0.4169 REMARK 3 T33: 0.4536 T12: 0.1102 REMARK 3 T13: 0.0064 T23: -0.1128 REMARK 3 L TENSOR REMARK 3 L11: 2.8043 L22: 3.2452 REMARK 3 L33: 1.0746 L12: 0.3707 REMARK 3 L13: 1.1719 L23: -1.2300 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.0123 S13: -0.3643 REMARK 3 S21: 0.7776 S22: 0.1119 S23: -0.1420 REMARK 3 S31: 0.1411 S32: -0.2306 S33: -0.0159 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 138 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.507 27.046 -6.844 REMARK 3 T TENSOR REMARK 3 T11: 0.4237 T22: 1.0371 REMARK 3 T33: 0.3839 T12: 0.1702 REMARK 3 T13: 0.0165 T23: -0.2761 REMARK 3 L TENSOR REMARK 3 L11: 0.2967 L22: 5.9742 REMARK 3 L33: 0.6672 L12: 0.2683 REMARK 3 L13: -0.3609 L23: -1.4546 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: 0.0888 S13: -0.7834 REMARK 3 S21: 1.3553 S22: 0.0086 S23: -1.6403 REMARK 3 S31: 0.1367 S32: 0.7851 S33: -0.2227 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8I60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1300035001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16481 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 61.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.70500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.99000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.85250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.99000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.55750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.99000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.85250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.99000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.99000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.55750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.70500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 9 REMARK 465 SER C 10 REMARK 465 ASP C 11 REMARK 465 SER C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 36 REMARK 465 LYS C 37 REMARK 465 GLN C 122 REMARK 465 SER C 123 REMARK 465 ASP C 124 REMARK 465 THR C 125 REMARK 465 ASN C 126 REMARK 465 ALA C 127 REMARK 465 MET C 128 REMARK 465 MET C 150 REMARK 465 GLY D 9 REMARK 465 SER D 10 REMARK 465 ASP D 11 REMARK 465 SER D 12 REMARK 465 GLY D 13 REMARK 465 GLY D 14 REMARK 465 ARG D 15 REMARK 465 VAL D 16 REMARK 465 LYS D 17 REMARK 465 GLY D 18 REMARK 465 VAL D 19 REMARK 465 THR D 20 REMARK 465 ILE D 21 REMARK 465 VAL D 22 REMARK 465 GLY D 35 REMARK 465 LYS D 36 REMARK 465 LYS D 37 REMARK 465 ARG D 38 REMARK 465 GLU D 39 REMARK 465 GLU D 40 REMARK 465 ASP D 41 REMARK 465 GLY D 42 REMARK 465 ILE D 102 REMARK 465 PHE D 103 REMARK 465 PHE D 104 REMARK 465 ILE D 105 REMARK 465 ASP D 106 REMARK 465 PRO D 107 REMARK 465 ASN D 108 REMARK 465 GLU D 109 REMARK 465 ARG D 110 REMARK 465 PHE D 144 REMARK 465 GLN D 145 REMARK 465 ASP D 146 REMARK 465 PRO D 147 REMARK 465 THR D 148 REMARK 465 ALA D 149 REMARK 465 MET D 150 REMARK 465 ALA A 197 REMARK 465 THR A 198 REMARK 465 LYS A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 207 REMARK 465 THR A 208 REMARK 465 GLY A 209 REMARK 465 ALA B 197 REMARK 465 THR B 198 REMARK 465 LYS B 199 REMARK 465 ALA B 200 REMARK 465 ALA B 207 REMARK 465 THR B 208 REMARK 465 GLY B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 15 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 16 CG1 CG2 REMARK 470 LYS C 17 CE NZ REMARK 470 ARG C 32 CD NE CZ NH1 NH2 REMARK 470 TYR C 33 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE C 34 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 39 CG CD OE1 OE2 REMARK 470 GLU C 40 CG CD OE1 OE2 REMARK 470 THR C 44 CG2 REMARK 470 LYS C 52 NZ REMARK 470 LYS C 64 CD CE NZ REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 GLU C 72 CG CD OE1 OE2 REMARK 470 LEU C 78 CG CD1 CD2 REMARK 470 LYS C 83 CG CD CE NZ REMARK 470 ILE C 88 CD1 REMARK 470 ILE C 105 CG2 CD1 REMARK 470 GLU C 109 CG CD OE1 OE2 REMARK 470 ARG C 110 CG CD NE CZ NH1 NH2 REMARK 470 PHE C 121 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 129 CG CD1 CD2 REMARK 470 LYS C 131 CD CE NZ REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 ILE C 143 CG1 CG2 CD1 REMARK 470 PHE C 144 CD1 CE1 CE2 CZ REMARK 470 GLN C 145 CG CD OE1 NE2 REMARK 470 ASP C 146 CG OD1 OD2 REMARK 470 THR C 148 OG1 CG2 REMARK 470 LYS D 23 CG CD CE NZ REMARK 470 ILE D 25 CG1 CG2 CD1 REMARK 470 TYR D 27 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 32 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 33 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL D 51 CG1 REMARK 470 TYR D 54 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 55 NE CZ NH1 NH2 REMARK 470 MET D 59 CG SD CE REMARK 470 SER D 60 OG REMARK 470 VAL D 63 CG1 CG2 REMARK 470 LYS D 65 CG CD CE NZ REMARK 470 ILE D 66 CG1 CG2 CD1 REMARK 470 GLN D 67 CG CD OE1 NE2 REMARK 470 LYS D 69 CG CD CE NZ REMARK 470 GLU D 72 CG CD OE1 OE2 REMARK 470 ASN D 76 CG OD1 ND2 REMARK 470 LEU D 78 CG CD1 CD2 REMARK 470 VAL D 80 CG1 CG2 REMARK 470 THR D 82 OG1 CG2 REMARK 470 LYS D 83 CG CD CE NZ REMARK 470 ILE D 99 CG1 CG2 CD1 REMARK 470 LYS D 101 CG CD CE NZ REMARK 470 VAL D 112 CG1 CG2 REMARK 470 THR D 113 OG1 CG2 REMARK 470 LEU D 114 CG CD1 CD2 REMARK 470 LYS D 119 CG CD CE NZ REMARK 470 GLN D 122 OE1 NE2 REMARK 470 LYS D 131 CE NZ REMARK 470 LYS D 132 CD CE NZ REMARK 470 VAL D 134 CG2 REMARK 470 GLU D 137 CG CD OE1 OE2 REMARK 470 TYR D 139 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 141 CG CD OE1 OE2 REMARK 470 MET D 142 CG SD CE REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 206 O REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 34 74.18 47.20 REMARK 500 ASP C 41 6.50 -152.16 REMARK 500 ASN C 76 78.65 57.04 REMARK 500 THR C 148 50.17 -95.94 REMARK 500 ASN D 76 74.06 51.21 REMARK 500 ALA B 205 -150.55 -102.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 420 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH D 421 DISTANCE = 8.91 ANGSTROMS DBREF 8I60 C 11 150 UNP O95619 YETS4_HUMAN 11 150 DBREF 8I60 D 11 150 UNP O95619 YETS4_HUMAN 11 150 DBREF 8I60 A 197 209 PDB 8I60 8I60 197 209 DBREF 8I60 B 197 209 PDB 8I60 8I60 197 209 SEQADV 8I60 GLY C 9 UNP O95619 EXPRESSION TAG SEQADV 8I60 SER C 10 UNP O95619 EXPRESSION TAG SEQADV 8I60 GLY D 9 UNP O95619 EXPRESSION TAG SEQADV 8I60 SER D 10 UNP O95619 EXPRESSION TAG SEQRES 1 C 142 GLY SER ASP SER GLY GLY ARG VAL LYS GLY VAL THR ILE SEQRES 2 C 142 VAL LYS PRO ILE VAL TYR GLY ASN VAL ALA ARG TYR PHE SEQRES 3 C 142 GLY LYS LYS ARG GLU GLU ASP GLY HIS THR HIS GLN TRP SEQRES 4 C 142 THR VAL TYR VAL LYS PRO TYR ARG ASN GLU ASP MET SER SEQRES 5 C 142 ALA TYR VAL LYS LYS ILE GLN PHE LYS LEU HIS GLU SER SEQRES 6 C 142 TYR GLY ASN PRO LEU ARG VAL VAL THR LYS PRO PRO TYR SEQRES 7 C 142 GLU ILE THR GLU THR GLY TRP GLY GLU PHE GLU ILE ILE SEQRES 8 C 142 ILE LYS ILE PHE PHE ILE ASP PRO ASN GLU ARG PRO VAL SEQRES 9 C 142 THR LEU TYR HIS LEU LEU LYS LEU PHE GLN SER ASP THR SEQRES 10 C 142 ASN ALA MET LEU GLY LYS LYS THR VAL VAL SER GLU PHE SEQRES 11 C 142 TYR ASP GLU MET ILE PHE GLN ASP PRO THR ALA MET SEQRES 1 D 142 GLY SER ASP SER GLY GLY ARG VAL LYS GLY VAL THR ILE SEQRES 2 D 142 VAL LYS PRO ILE VAL TYR GLY ASN VAL ALA ARG TYR PHE SEQRES 3 D 142 GLY LYS LYS ARG GLU GLU ASP GLY HIS THR HIS GLN TRP SEQRES 4 D 142 THR VAL TYR VAL LYS PRO TYR ARG ASN GLU ASP MET SER SEQRES 5 D 142 ALA TYR VAL LYS LYS ILE GLN PHE LYS LEU HIS GLU SER SEQRES 6 D 142 TYR GLY ASN PRO LEU ARG VAL VAL THR LYS PRO PRO TYR SEQRES 7 D 142 GLU ILE THR GLU THR GLY TRP GLY GLU PHE GLU ILE ILE SEQRES 8 D 142 ILE LYS ILE PHE PHE ILE ASP PRO ASN GLU ARG PRO VAL SEQRES 9 D 142 THR LEU TYR HIS LEU LEU LYS LEU PHE GLN SER ASP THR SEQRES 10 D 142 ASN ALA MET LEU GLY LYS LYS THR VAL VAL SER GLU PHE SEQRES 11 D 142 TYR ASP GLU MET ILE PHE GLN ASP PRO THR ALA MET SEQRES 1 A 13 ALA THR LYS ALA ALA ARG KCR SER ALA PRO ALA THR GLY SEQRES 1 B 13 ALA THR LYS ALA ALA ARG KCR SER ALA PRO ALA THR GLY HET KCR A 203 14 HET KCR B 203 14 HET SO4 C 301 5 HET GOL D 301 6 HETNAM KCR N-6-CROTONYL-L-LYSINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 KCR 2(C10 H18 N2 O3) FORMUL 5 SO4 O4 S 2- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *57(H2 O) HELIX 1 AA1 ASP C 58 ALA C 61 5 4 HELIX 2 AA2 ASP D 58 TYR D 62 5 5 HELIX 3 AA3 SER D 123 LEU D 129 1 7 SHEET 1 AA1 4 TYR C 86 GLY C 92 0 SHEET 2 AA1 4 HIS C 45 PRO C 53 -1 N TRP C 47 O GLU C 90 SHEET 3 AA1 4 VAL C 19 TYR C 33 -1 N VAL C 26 O LYS C 52 SHEET 4 AA1 4 THR C 133 ASP C 146 -1 O PHE C 138 N TYR C 27 SHEET 1 AA2 4 LEU C 78 VAL C 81 0 SHEET 2 AA2 4 VAL C 63 LYS C 69 -1 N PHE C 68 O ARG C 79 SHEET 3 AA2 4 GLU C 95 PHE C 104 -1 O PHE C 103 N LYS C 64 SHEET 4 AA2 4 VAL C 112 LEU C 117 -1 O LEU C 114 N ILE C 100 SHEET 1 AA3 4 LEU C 78 VAL C 81 0 SHEET 2 AA3 4 VAL C 63 LYS C 69 -1 N PHE C 68 O ARG C 79 SHEET 3 AA3 4 GLU C 95 PHE C 104 -1 O PHE C 103 N LYS C 64 SHEET 4 AA3 4 KCR A 203 SER A 204 -1 O SER A 204 N GLU C 95 SHEET 1 AA4 4 TYR D 86 GLY D 92 0 SHEET 2 AA4 4 HIS D 45 PRO D 53 -1 N TRP D 47 O GLU D 90 SHEET 3 AA4 4 ILE D 25 TYR D 33 -1 N VAL D 26 O LYS D 52 SHEET 4 AA4 4 VAL D 134 PHE D 138 -1 O PHE D 138 N TYR D 27 SHEET 1 AA5 4 LEU D 78 VAL D 81 0 SHEET 2 AA5 4 ILE D 66 LYS D 69 -1 N PHE D 68 O ARG D 79 SHEET 3 AA5 4 GLU D 97 LYS D 101 -1 O ILE D 99 N LYS D 69 SHEET 4 AA5 4 LEU D 114 LEU D 117 -1 O HIS D 116 N ILE D 98 LINK C ARG A 202 N KCR A 203 1555 1555 1.33 LINK C KCR A 203 N SER A 204 1555 1555 1.33 LINK C ARG B 202 N KCR B 203 1555 1555 1.32 LINK C KCR B 203 N SER B 204 1555 1555 1.33 CISPEP 1 PRO C 84 PRO C 85 0 -5.31 CISPEP 2 PRO D 84 PRO D 85 0 3.69 CRYST1 91.980 91.980 83.410 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010872 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011989 0.00000