HEADER OXIDOREDUCTASE 31-JAN-23 8I7H TITLE MESO-DIAMINOPIMELATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MESO-DIAMINOPIMELATE D-DEHYDROGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS VULGARIS; SOURCE 3 ORGANISM_TAXID: 585; SOURCE 4 GENE: EKQ45_05540; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MESO-DIAMINOPIMELATE DEHYDROGENASE, OXIDORDEUCTASE, D-AMINO ACID, KEYWDS 2 REDUCTIVE AMINATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.F.WU,W.SONG REVDAT 1 07-FEB-24 8I7H 0 JRNL AUTH T.F.WU,W.SONG JRNL TITL ANALYSIS OF THE CATALYTIC MECHANISM OF MESO-DAPDH AND JRNL TITL 2 EXTENSION OF D-AROMATIC AMINO ACID SUBSTRATE SCOPE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.0 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 38848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.0980 - 3.0200 0.96 2806 144 0.3190 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.273 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.39000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : 4.49000 REMARK 3 B12 (A**2) : -0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 6 REMARK 3 NCS GROUP : 1 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : 8939 REMARK 3 RMSD : 0.05 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 4 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 5 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 6 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : NULL REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8I7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40836 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.020 REMARK 200 RESOLUTION RANGE LOW (A) : 47.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE,2M REMARK 280 AMMONIUM SULFATE, PH 4.5, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 106.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.57441 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 81.94667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 106.65000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.57441 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 81.94667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 106.65000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.57441 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 81.94667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 106.65000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 61.57441 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 81.94667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 106.65000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 61.57441 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.94667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 106.65000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 61.57441 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 81.94667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 123.14881 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 163.89333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 123.14881 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 163.89333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 123.14881 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 163.89333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 123.14881 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 163.89333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 123.14881 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 163.89333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 123.14881 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 163.89333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -344.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -535.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 106.65000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -184.72322 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 213.30000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 213.30000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -123.14881 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 81.94667 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -123.14881 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 81.94667 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 106.65000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 61.57441 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 81.94667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 12 58.05 -143.81 REMARK 500 ASN A 41 99.58 -62.36 REMARK 500 PHE A 91 116.18 -39.68 REMARK 500 ALA A 119 50.22 -112.94 REMARK 500 ASP A 122 94.26 -162.05 REMARK 500 ALA A 137 78.49 -161.82 REMARK 500 ALA A 189 118.12 -31.49 REMARK 500 GLU A 210 106.00 -54.36 REMARK 500 ASP A 217 -78.56 -77.20 REMARK 500 ASN A 253 -70.59 -56.92 REMARK 500 TYR B 12 57.12 -143.50 REMARK 500 ALA B 119 50.19 -113.24 REMARK 500 ASP B 122 94.39 -161.12 REMARK 500 ALA B 137 77.88 -162.47 REMARK 500 ALA B 189 119.11 -34.08 REMARK 500 GLU B 210 105.90 -52.94 REMARK 500 ASP B 217 -78.89 -75.71 REMARK 500 ASN B 253 -70.18 -57.03 REMARK 500 TYR C 12 57.60 -144.79 REMARK 500 ALA C 119 52.05 -113.20 REMARK 500 ASP C 122 94.30 -161.46 REMARK 500 ALA C 137 78.23 -161.00 REMARK 500 ALA C 189 117.03 -31.55 REMARK 500 GLU C 210 106.01 -53.42 REMARK 500 ASP C 217 -78.90 -77.60 REMARK 500 ASN C 253 -70.14 -57.85 REMARK 500 TYR D 12 58.19 -144.09 REMARK 500 ASN D 41 99.80 -61.88 REMARK 500 PHE D 91 115.83 -39.26 REMARK 500 ALA D 119 50.81 -113.10 REMARK 500 ASP D 122 93.37 -161.33 REMARK 500 ALA D 137 78.63 -161.88 REMARK 500 ALA D 189 118.25 -32.72 REMARK 500 GLU D 210 106.40 -54.87 REMARK 500 ASP D 217 -79.03 -76.09 REMARK 500 ASN D 253 -70.09 -58.24 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8I7H A 1 299 UNP A0A857SCE6_PROVU DBREF2 8I7H A A0A857SCE6 1 299 DBREF1 8I7H B 1 299 UNP A0A857SCE6_PROVU DBREF2 8I7H B A0A857SCE6 1 299 DBREF1 8I7H C 1 299 UNP A0A857SCE6_PROVU DBREF2 8I7H C A0A857SCE6 1 299 DBREF1 8I7H D 1 299 UNP A0A857SCE6_PROVU DBREF2 8I7H D A0A857SCE6 1 299 SEQRES 1 A 299 MET ASN THR LYS ILE LYS VAL ALA ILE VAL GLY TYR GLY SEQRES 2 A 299 ASN ILE GLY ARG PHE ALA LEU GLU ALA VAL GLN ALA ALA SEQRES 3 A 299 GLN ASP PHE GLU LEU VAL GLY VAL VAL ARG ARG ASP ILE SEQRES 4 A 299 ASN ASN VAL PRO GLU GLU LEU GLN ASN ILE THR VAL THR SEQRES 5 A 299 ASN ASP ILE LYS THR LEU GLY ASP VAL ASP VAL ALA LEU SEQRES 6 A 299 LEU CYS SER PRO THR ARG ALA ILE LYS GLU LEU ALA LYS SEQRES 7 A 299 SER ILE LEU SER LEU GLY ILE ASN THR VAL ASP SER PHE SEQRES 8 A 299 ASP VAL HIS SER GLU ILE VAL SER LEU LYS THR GLU LEU SEQRES 9 A 299 ASP ASP VAL ALA LYS LYS HIS ASP ARG VAL ALA VAL ILE SEQRES 10 A 299 SER ALA GLY TRP ASP PRO GLY SER ASP SER ILE VAL ARG SEQRES 11 A 299 THR LEU MET LEU ALA MET ALA PRO LYS GLY ILE THR TYR SEQRES 12 A 299 THR ASN PHE GLY PRO GLY MET SER MET GLY HIS SER VAL SEQRES 13 A 299 ALA ALA LYS ALA ILE GLU GLY VAL LYS ASP ALA LEU SER SEQRES 14 A 299 MET THR ILE PRO LEU GLY THR GLY VAL HIS ARG ARG MET SEQRES 15 A 299 VAL TYR VAL GLU LEU GLU ALA GLY ALA ASN PHE ASN GLN SEQRES 16 A 299 VAL GLU GLN ALA ILE LYS ALA ASP SER TYR PHE SER SER SEQRES 17 A 299 ASP GLU THR HIS VAL LYS GLN VAL ASP SER VAL ASP SER SEQRES 18 A 299 LEU LYS ASP VAL GLY HIS GLY VAL HIS MET THR HIS LYS SEQRES 19 A 299 GLY VAL SER GLY LYS THR HIS ASN GLN LEU PHE GLU TYR SEQRES 20 A 299 SER MET ARG ILE ASN ASN PRO ALA LEU THR SER GLN PHE SEQRES 21 A 299 MET VAL SER ALA ALA ARG ALA SER MET LYS GLN ARG ALA SEQRES 22 A 299 GLY ALA TYR THR VAL ILE GLU ILE PRO PRO VAL ASP PHE SEQRES 23 A 299 LEU ALA GLY ASP LEU ASN THR LEU ILE ALA LYS LEU VAL SEQRES 1 B 299 MET ASN THR LYS ILE LYS VAL ALA ILE VAL GLY TYR GLY SEQRES 2 B 299 ASN ILE GLY ARG PHE ALA LEU GLU ALA VAL GLN ALA ALA SEQRES 3 B 299 GLN ASP PHE GLU LEU VAL GLY VAL VAL ARG ARG ASP ILE SEQRES 4 B 299 ASN ASN VAL PRO GLU GLU LEU GLN ASN ILE THR VAL THR SEQRES 5 B 299 ASN ASP ILE LYS THR LEU GLY ASP VAL ASP VAL ALA LEU SEQRES 6 B 299 LEU CYS SER PRO THR ARG ALA ILE LYS GLU LEU ALA LYS SEQRES 7 B 299 SER ILE LEU SER LEU GLY ILE ASN THR VAL ASP SER PHE SEQRES 8 B 299 ASP VAL HIS SER GLU ILE VAL SER LEU LYS THR GLU LEU SEQRES 9 B 299 ASP ASP VAL ALA LYS LYS HIS ASP ARG VAL ALA VAL ILE SEQRES 10 B 299 SER ALA GLY TRP ASP PRO GLY SER ASP SER ILE VAL ARG SEQRES 11 B 299 THR LEU MET LEU ALA MET ALA PRO LYS GLY ILE THR TYR SEQRES 12 B 299 THR ASN PHE GLY PRO GLY MET SER MET GLY HIS SER VAL SEQRES 13 B 299 ALA ALA LYS ALA ILE GLU GLY VAL LYS ASP ALA LEU SER SEQRES 14 B 299 MET THR ILE PRO LEU GLY THR GLY VAL HIS ARG ARG MET SEQRES 15 B 299 VAL TYR VAL GLU LEU GLU ALA GLY ALA ASN PHE ASN GLN SEQRES 16 B 299 VAL GLU GLN ALA ILE LYS ALA ASP SER TYR PHE SER SER SEQRES 17 B 299 ASP GLU THR HIS VAL LYS GLN VAL ASP SER VAL ASP SER SEQRES 18 B 299 LEU LYS ASP VAL GLY HIS GLY VAL HIS MET THR HIS LYS SEQRES 19 B 299 GLY VAL SER GLY LYS THR HIS ASN GLN LEU PHE GLU TYR SEQRES 20 B 299 SER MET ARG ILE ASN ASN PRO ALA LEU THR SER GLN PHE SEQRES 21 B 299 MET VAL SER ALA ALA ARG ALA SER MET LYS GLN ARG ALA SEQRES 22 B 299 GLY ALA TYR THR VAL ILE GLU ILE PRO PRO VAL ASP PHE SEQRES 23 B 299 LEU ALA GLY ASP LEU ASN THR LEU ILE ALA LYS LEU VAL SEQRES 1 C 299 MET ASN THR LYS ILE LYS VAL ALA ILE VAL GLY TYR GLY SEQRES 2 C 299 ASN ILE GLY ARG PHE ALA LEU GLU ALA VAL GLN ALA ALA SEQRES 3 C 299 GLN ASP PHE GLU LEU VAL GLY VAL VAL ARG ARG ASP ILE SEQRES 4 C 299 ASN ASN VAL PRO GLU GLU LEU GLN ASN ILE THR VAL THR SEQRES 5 C 299 ASN ASP ILE LYS THR LEU GLY ASP VAL ASP VAL ALA LEU SEQRES 6 C 299 LEU CYS SER PRO THR ARG ALA ILE LYS GLU LEU ALA LYS SEQRES 7 C 299 SER ILE LEU SER LEU GLY ILE ASN THR VAL ASP SER PHE SEQRES 8 C 299 ASP VAL HIS SER GLU ILE VAL SER LEU LYS THR GLU LEU SEQRES 9 C 299 ASP ASP VAL ALA LYS LYS HIS ASP ARG VAL ALA VAL ILE SEQRES 10 C 299 SER ALA GLY TRP ASP PRO GLY SER ASP SER ILE VAL ARG SEQRES 11 C 299 THR LEU MET LEU ALA MET ALA PRO LYS GLY ILE THR TYR SEQRES 12 C 299 THR ASN PHE GLY PRO GLY MET SER MET GLY HIS SER VAL SEQRES 13 C 299 ALA ALA LYS ALA ILE GLU GLY VAL LYS ASP ALA LEU SER SEQRES 14 C 299 MET THR ILE PRO LEU GLY THR GLY VAL HIS ARG ARG MET SEQRES 15 C 299 VAL TYR VAL GLU LEU GLU ALA GLY ALA ASN PHE ASN GLN SEQRES 16 C 299 VAL GLU GLN ALA ILE LYS ALA ASP SER TYR PHE SER SER SEQRES 17 C 299 ASP GLU THR HIS VAL LYS GLN VAL ASP SER VAL ASP SER SEQRES 18 C 299 LEU LYS ASP VAL GLY HIS GLY VAL HIS MET THR HIS LYS SEQRES 19 C 299 GLY VAL SER GLY LYS THR HIS ASN GLN LEU PHE GLU TYR SEQRES 20 C 299 SER MET ARG ILE ASN ASN PRO ALA LEU THR SER GLN PHE SEQRES 21 C 299 MET VAL SER ALA ALA ARG ALA SER MET LYS GLN ARG ALA SEQRES 22 C 299 GLY ALA TYR THR VAL ILE GLU ILE PRO PRO VAL ASP PHE SEQRES 23 C 299 LEU ALA GLY ASP LEU ASN THR LEU ILE ALA LYS LEU VAL SEQRES 1 D 299 MET ASN THR LYS ILE LYS VAL ALA ILE VAL GLY TYR GLY SEQRES 2 D 299 ASN ILE GLY ARG PHE ALA LEU GLU ALA VAL GLN ALA ALA SEQRES 3 D 299 GLN ASP PHE GLU LEU VAL GLY VAL VAL ARG ARG ASP ILE SEQRES 4 D 299 ASN ASN VAL PRO GLU GLU LEU GLN ASN ILE THR VAL THR SEQRES 5 D 299 ASN ASP ILE LYS THR LEU GLY ASP VAL ASP VAL ALA LEU SEQRES 6 D 299 LEU CYS SER PRO THR ARG ALA ILE LYS GLU LEU ALA LYS SEQRES 7 D 299 SER ILE LEU SER LEU GLY ILE ASN THR VAL ASP SER PHE SEQRES 8 D 299 ASP VAL HIS SER GLU ILE VAL SER LEU LYS THR GLU LEU SEQRES 9 D 299 ASP ASP VAL ALA LYS LYS HIS ASP ARG VAL ALA VAL ILE SEQRES 10 D 299 SER ALA GLY TRP ASP PRO GLY SER ASP SER ILE VAL ARG SEQRES 11 D 299 THR LEU MET LEU ALA MET ALA PRO LYS GLY ILE THR TYR SEQRES 12 D 299 THR ASN PHE GLY PRO GLY MET SER MET GLY HIS SER VAL SEQRES 13 D 299 ALA ALA LYS ALA ILE GLU GLY VAL LYS ASP ALA LEU SER SEQRES 14 D 299 MET THR ILE PRO LEU GLY THR GLY VAL HIS ARG ARG MET SEQRES 15 D 299 VAL TYR VAL GLU LEU GLU ALA GLY ALA ASN PHE ASN GLN SEQRES 16 D 299 VAL GLU GLN ALA ILE LYS ALA ASP SER TYR PHE SER SER SEQRES 17 D 299 ASP GLU THR HIS VAL LYS GLN VAL ASP SER VAL ASP SER SEQRES 18 D 299 LEU LYS ASP VAL GLY HIS GLY VAL HIS MET THR HIS LYS SEQRES 19 D 299 GLY VAL SER GLY LYS THR HIS ASN GLN LEU PHE GLU TYR SEQRES 20 D 299 SER MET ARG ILE ASN ASN PRO ALA LEU THR SER GLN PHE SEQRES 21 D 299 MET VAL SER ALA ALA ARG ALA SER MET LYS GLN ARG ALA SEQRES 22 D 299 GLY ALA TYR THR VAL ILE GLU ILE PRO PRO VAL ASP PHE SEQRES 23 D 299 LEU ALA GLY ASP LEU ASN THR LEU ILE ALA LYS LEU VAL HET API A 600 13 HET API A 601 13 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET API B 600 13 HET API B 601 13 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HET API C 600 13 HET API C 601 13 HET SO4 C 602 5 HET SO4 C 603 5 HET SO4 C 604 5 HET API D 600 13 HET API D 601 13 HET SO4 D 602 5 HET SO4 D 603 5 HET SO4 D 604 5 HET SO4 D 605 5 HET SO4 D 606 5 HETNAM API 2,6-DIAMINOPIMELIC ACID HETNAM SO4 SULFATE ION FORMUL 5 API 8(C7 H14 N2 O4) FORMUL 7 SO4 15(O4 S 2-) FORMUL 28 HOH *18(H2 O) HELIX 1 AA1 GLY A 13 ALA A 26 1 14 HELIX 2 AA2 PRO A 43 GLN A 47 5 5 HELIX 3 AA3 ASP A 54 GLY A 59 5 6 HELIX 4 AA4 PRO A 69 ARG A 71 5 3 HELIX 5 AA5 ALA A 72 SER A 82 1 11 HELIX 6 AA6 VAL A 93 SER A 95 5 3 HELIX 7 AA7 GLU A 96 HIS A 111 1 16 HELIX 8 AA8 GLY A 124 ALA A 137 1 14 HELIX 9 AA9 SER A 151 ALA A 160 1 10 HELIX 10 AB1 ASN A 192 ASP A 203 1 12 HELIX 11 AB2 VAL A 219 LYS A 223 5 5 HELIX 12 AB3 ASN A 253 MET A 269 1 17 HELIX 13 AB4 THR A 277 ILE A 281 5 5 HELIX 14 AB5 PRO A 282 LEU A 287 5 6 HELIX 15 AB6 ASP A 290 VAL A 299 1 10 HELIX 16 AB7 GLY B 13 ALA B 26 1 14 HELIX 17 AB8 PRO B 43 GLN B 47 5 5 HELIX 18 AB9 ASP B 54 GLY B 59 5 6 HELIX 19 AC1 PRO B 69 ARG B 71 5 3 HELIX 20 AC2 ALA B 72 SER B 82 1 11 HELIX 21 AC3 VAL B 93 SER B 95 5 3 HELIX 22 AC4 GLU B 96 HIS B 111 1 16 HELIX 23 AC5 GLY B 124 ALA B 137 1 14 HELIX 24 AC6 SER B 151 ALA B 160 1 10 HELIX 25 AC7 ASN B 192 ASP B 203 1 12 HELIX 26 AC8 VAL B 219 LYS B 223 5 5 HELIX 27 AC9 ASN B 253 MET B 269 1 17 HELIX 28 AD1 THR B 277 ILE B 281 5 5 HELIX 29 AD2 PRO B 282 LEU B 287 5 6 HELIX 30 AD3 ASP B 290 VAL B 299 1 10 HELIX 31 AD4 GLY C 13 ALA C 26 1 14 HELIX 32 AD5 PRO C 43 GLN C 47 5 5 HELIX 33 AD6 ASP C 54 GLY C 59 5 6 HELIX 34 AD7 PRO C 69 ARG C 71 5 3 HELIX 35 AD8 ALA C 72 SER C 82 1 11 HELIX 36 AD9 VAL C 93 SER C 95 5 3 HELIX 37 AE1 GLU C 96 HIS C 111 1 16 HELIX 38 AE2 GLY C 124 ALA C 137 1 14 HELIX 39 AE3 SER C 151 ALA C 160 1 10 HELIX 40 AE4 ASN C 192 ASP C 203 1 12 HELIX 41 AE5 VAL C 219 LYS C 223 5 5 HELIX 42 AE6 ASN C 253 MET C 269 1 17 HELIX 43 AE7 THR C 277 ILE C 281 5 5 HELIX 44 AE8 PRO C 282 LEU C 287 5 6 HELIX 45 AE9 ASP C 290 VAL C 299 1 10 HELIX 46 AF1 ILE D 15 ALA D 26 1 12 HELIX 47 AF2 PRO D 43 GLN D 47 5 5 HELIX 48 AF3 ASP D 54 GLY D 59 5 6 HELIX 49 AF4 PRO D 69 ARG D 71 5 3 HELIX 50 AF5 ALA D 72 SER D 82 1 11 HELIX 51 AF6 VAL D 93 SER D 95 5 3 HELIX 52 AF7 GLU D 96 HIS D 111 1 16 HELIX 53 AF8 GLY D 124 ALA D 137 1 14 HELIX 54 AF9 SER D 151 ALA D 160 1 10 HELIX 55 AG1 ASN D 192 ASP D 203 1 12 HELIX 56 AG2 VAL D 219 LYS D 223 5 5 HELIX 57 AG3 ASN D 253 MET D 269 1 17 HELIX 58 AG4 THR D 277 ILE D 281 5 5 HELIX 59 AG5 PRO D 282 LEU D 287 5 6 HELIX 60 AG6 ASP D 290 VAL D 299 1 10 SHEET 1 AA1 7 VAL A 51 THR A 52 0 SHEET 2 AA1 7 PHE A 29 VAL A 35 1 N VAL A 34 O THR A 52 SHEET 3 AA1 7 ILE A 5 VAL A 10 1 N ILE A 9 O VAL A 35 SHEET 4 AA1 7 VAL A 63 LEU A 66 1 O LEU A 65 N ALA A 8 SHEET 5 AA1 7 ASN A 86 ASP A 89 1 O ASN A 86 N ALA A 64 SHEET 6 AA1 7 VAL A 114 VAL A 116 1 O VAL A 116 N THR A 87 SHEET 7 AA1 7 GLY A 274 TYR A 276 1 O TYR A 276 N ALA A 115 SHEET 1 AA2 6 LYS A 139 PHE A 146 0 SHEET 2 AA2 6 GLY A 226 SER A 237 -1 O VAL A 236 N LYS A 139 SHEET 3 AA2 6 THR A 240 ASN A 252 -1 O ILE A 251 N HIS A 227 SHEET 4 AA2 6 THR B 240 ASN B 252 -1 O SER B 248 N GLU A 246 SHEET 5 AA2 6 GLY B 226 SER B 237 -1 N HIS B 227 O ILE B 251 SHEET 6 AA2 6 LYS B 139 PHE B 146 -1 N TYR B 143 O THR B 232 SHEET 1 AA3 4 GLY A 149 MET A 150 0 SHEET 2 AA3 4 VAL A 164 PRO A 173 -1 O THR A 171 N GLY A 149 SHEET 3 AA3 4 HIS A 179 LEU A 187 -1 O MET A 182 N MET A 170 SHEET 4 AA3 4 GLU A 210 GLN A 215 1 O HIS A 212 N VAL A 183 SHEET 1 AA4 7 VAL B 51 THR B 52 0 SHEET 2 AA4 7 PHE B 29 VAL B 35 1 N VAL B 34 O THR B 52 SHEET 3 AA4 7 ILE B 5 VAL B 10 1 N ILE B 9 O VAL B 35 SHEET 4 AA4 7 VAL B 63 LEU B 66 1 O LEU B 65 N ALA B 8 SHEET 5 AA4 7 ASN B 86 ASP B 89 1 O ASN B 86 N ALA B 64 SHEET 6 AA4 7 VAL B 114 VAL B 116 1 O VAL B 116 N THR B 87 SHEET 7 AA4 7 GLY B 274 TYR B 276 1 O TYR B 276 N ALA B 115 SHEET 1 AA5 4 GLY B 149 MET B 150 0 SHEET 2 AA5 4 VAL B 164 PRO B 173 -1 O THR B 171 N GLY B 149 SHEET 3 AA5 4 HIS B 179 LEU B 187 -1 O MET B 182 N MET B 170 SHEET 4 AA5 4 GLU B 210 GLN B 215 1 O HIS B 212 N VAL B 183 SHEET 1 AA6 7 VAL C 51 THR C 52 0 SHEET 2 AA6 7 PHE C 29 VAL C 35 1 N VAL C 34 O THR C 52 SHEET 3 AA6 7 ILE C 5 VAL C 10 1 N ILE C 9 O VAL C 35 SHEET 4 AA6 7 VAL C 63 LEU C 66 1 O LEU C 65 N ALA C 8 SHEET 5 AA6 7 ASN C 86 VAL C 88 1 O VAL C 88 N LEU C 66 SHEET 6 AA6 7 VAL C 114 VAL C 116 1 O VAL C 116 N THR C 87 SHEET 7 AA6 7 GLY C 274 TYR C 276 1 O TYR C 276 N ALA C 115 SHEET 1 AA7 3 LYS C 139 PHE C 146 0 SHEET 2 AA7 3 GLY C 226 SER C 237 -1 O VAL C 236 N LYS C 139 SHEET 3 AA7 3 THR C 240 ASN C 252 -1 O TYR C 247 N MET C 231 SHEET 1 AA8 4 GLY C 149 MET C 150 0 SHEET 2 AA8 4 VAL C 164 PRO C 173 -1 O THR C 171 N GLY C 149 SHEET 3 AA8 4 HIS C 179 LEU C 187 -1 O MET C 182 N MET C 170 SHEET 4 AA8 4 GLU C 210 GLN C 215 1 O HIS C 212 N VAL C 183 SHEET 1 AA9 7 VAL D 51 THR D 52 0 SHEET 2 AA9 7 PHE D 29 VAL D 35 1 N VAL D 34 O THR D 52 SHEET 3 AA9 7 ILE D 5 VAL D 10 1 N ILE D 9 O VAL D 35 SHEET 4 AA9 7 VAL D 63 LEU D 66 1 O LEU D 65 N ALA D 8 SHEET 5 AA9 7 ASN D 86 VAL D 88 1 O VAL D 88 N LEU D 66 SHEET 6 AA9 7 VAL D 114 VAL D 116 1 O VAL D 116 N THR D 87 SHEET 7 AA9 7 GLY D 274 TYR D 276 1 O TYR D 276 N ALA D 115 SHEET 1 AB1 3 LYS D 139 PHE D 146 0 SHEET 2 AB1 3 GLY D 226 SER D 237 -1 O THR D 232 N TYR D 143 SHEET 3 AB1 3 THR D 240 ASN D 252 -1 O TYR D 247 N MET D 231 SHEET 1 AB2 4 GLY D 149 MET D 150 0 SHEET 2 AB2 4 VAL D 164 PRO D 173 -1 O THR D 171 N GLY D 149 SHEET 3 AB2 4 HIS D 179 LEU D 187 -1 O MET D 182 N MET D 170 SHEET 4 AB2 4 GLU D 210 GLN D 215 1 O HIS D 212 N VAL D 183 CISPEP 1 ASP A 122 PRO A 123 0 5.70 CISPEP 2 GLY A 147 PRO A 148 0 1.80 CISPEP 3 ASP B 122 PRO B 123 0 4.63 CISPEP 4 GLY B 147 PRO B 148 0 2.64 CISPEP 5 ASP C 122 PRO C 123 0 4.79 CISPEP 6 GLY C 147 PRO C 148 0 1.20 CISPEP 7 ASP D 122 PRO D 123 0 5.61 CISPEP 8 GLY D 147 PRO D 148 0 1.71 CRYST1 213.300 213.300 245.840 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004688 0.002707 0.000000 0.00000 SCALE2 0.000000 0.005414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004068 0.00000