HEADER HYDROLASE 10-FEB-23 8IBR TITLE CRYSTAL STRUCTURE OF GH42 BETA-GALACTOSIDASE BIBGA42A FROM TITLE 2 BIFIDOBACTERIUM LONGUM SUBSPECIES INFANTIS IN COMPLEX WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS (STRAIN SOURCE 3 ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12); SOURCE 4 ORGANISM_TAXID: 391904; SOURCE 5 STRAIN: ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12; SOURCE 6 GENE: BLON_2016; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DELTA-LACZ KEYWDS GLYCOSIDE HYDROLASE FAMILY 42, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HIDAKA,S.FUSHINOBU,A.GOTOH,T.KATAYAMA REVDAT 2 20-DEC-23 8IBR 1 JRNL REVDAT 1 07-JUN-23 8IBR 0 JRNL AUTH A.GOTOH,M.HIDAKA,H.SAKURAMA,M.NISHIMOTO,M.KITAOKA, JRNL AUTH 2 M.SAKANAKA,S.FUSHINOBU,T.KATAYAMA JRNL TITL SUBSTRATE RECOGNITION MODE OF A GLYCOSIDE HYDROLASE FAMILY JRNL TITL 2 42 BETA-GALACTOSIDASE FROM BIFIDOBACTERIUM LONGUM SUBSPECIES JRNL TITL 3 INFANTIS ( BI BGA42A) REVEALED BY CRYSTALLOGRAPHIC AND JRNL TITL 4 MUTATIONAL ANALYSES. JRNL REF MICROBIOME RES REP V. 2 20 2023 JRNL REFN ISSN 2771-5965 JRNL PMID 38046823 JRNL DOI 10.20517/MRR.2023.14 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.YOSHIDA,H.SAKURAMA,M.KIYOHARA,M.NAKAJIMA,M.KITAOKA, REMARK 1 AUTH 2 H.ASHIDA,J.HIROSE,T.KATAYAMA,K.YAMAMOTO,H.KUMAGAI REMARK 1 TITL BIFIDOBACTERIUM LONGUM SUBSP. INFANTIS USES TWO DIFFERENT REMARK 1 TITL 2 BETA-GALACTOSIDASES FOR SELECTIVELY DEGRADING TYPE-1 AND REMARK 1 TITL 3 TYPE-2 HUMAN MILK OLIGOSACCHARIDES. REMARK 1 REF GLYCOBIOLOGY V. 22 361 2012 REMARK 1 REFN ESSN 1460-2423 REMARK 1 PMID 21926104 REMARK 1 DOI 10.1093/GLYCOB/CWR116 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 81166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4302 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : 4.35000 REMARK 3 B12 (A**2) : -0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5648 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5071 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7700 ; 1.570 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11671 ; 0.889 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 6.758 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ; 7.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 852 ;14.181 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6718 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1350 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2765 ; 1.439 ; 1.356 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2765 ; 1.438 ; 1.356 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3455 ; 2.165 ; 2.434 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3456 ; 2.165 ; 2.435 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2883 ; 2.384 ; 1.581 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2884 ; 2.383 ; 1.582 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4245 ; 3.744 ; 2.780 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6631 ; 5.120 ;14.170 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6632 ; 5.120 ;14.170 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8IBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.12.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M KSCN, 30% PEG MME 2000, 25% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 64280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 145.64200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 72.82100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 126.12967 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 958 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 984 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1111 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1546 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 692 REMARK 465 ALA A 693 REMARK 465 ALA A 694 REMARK 465 LEU A 695 REMARK 465 GLU A 696 REMARK 465 HIS A 697 REMARK 465 HIS A 698 REMARK 465 HIS A 699 REMARK 465 HIS A 700 REMARK 465 HIS A 701 REMARK 465 HIS A 702 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 174 CD GLU A 174 OE1 -0.067 REMARK 500 GLU A 251 CD GLU A 251 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 120 -118.65 -127.07 REMARK 500 HIS A 123 44.06 -85.62 REMARK 500 SER A 158 -140.05 50.85 REMARK 500 GLU A 160 62.42 34.65 REMARK 500 SER A 170 175.88 -59.45 REMARK 500 ARG A 214 -178.79 -62.44 REMARK 500 SER A 322 -127.44 -154.82 REMARK 500 SER A 403 -11.15 77.90 REMARK 500 PRO A 461 49.31 -83.29 REMARK 500 TYR A 498 150.53 -40.88 REMARK 500 ASP A 553 -39.93 72.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 485 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8IBR A 1 691 UNP B7GUD7 B7GUD7_BIFLS 1 691 SEQADV 8IBR ALA A 692 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR ALA A 693 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR ALA A 694 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR LEU A 695 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR GLU A 696 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR HIS A 697 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR HIS A 698 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR HIS A 699 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR HIS A 700 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR HIS A 701 UNP B7GUD7 EXPRESSION TAG SEQADV 8IBR HIS A 702 UNP B7GUD7 EXPRESSION TAG SEQRES 1 A 702 MET GLU HIS ARG ALA PHE LYS TRP PRO GLN PRO LEU ALA SEQRES 2 A 702 GLY ASN LYS PRO ARG ILE TRP TYR GLY GLY ASP TYR ASN SEQRES 3 A 702 PRO ASP GLN TRP PRO GLU GLU VAL TRP ASP GLU ASP VAL SEQRES 4 A 702 ALA LEU MET GLN GLN ALA GLY VAL ASN LEU VAL SER VAL SEQRES 5 A 702 ALA ILE PHE SER TRP ALA LYS LEU GLU PRO GLU GLU GLY SEQRES 6 A 702 VAL TYR ASP PHE ASP TRP LEU ASP ARG VAL ILE ASP LYS SEQRES 7 A 702 LEU GLY LYS ALA GLY ILE ALA VAL ASP LEU ALA SER GLY SEQRES 8 A 702 THR ALA SER PRO PRO MET TRP MET THR GLN ALA HIS PRO SEQRES 9 A 702 GLU ILE LEU TRP VAL ASP TYR ARG GLY ASP VAL CYS GLN SEQRES 10 A 702 PRO GLY ALA ARG GLN HIS TRP ARG ALA THR SER PRO VAL SEQRES 11 A 702 PHE LEU ASP TYR ALA LEU ASN LEU CYS ARG LYS MET ALA SEQRES 12 A 702 GLU HIS TYR LYS ASP ASN PRO TYR VAL VAL SER TRP HIS SEQRES 13 A 702 VAL SER ASN GLU TYR GLY CYS HIS ASN ARG PHE ASP TYR SEQRES 14 A 702 SER GLU ASP ALA GLU ARG ALA PHE GLN LYS TRP CYS GLU SEQRES 15 A 702 LYS LYS TYR GLY THR ILE ASP ALA VAL ASN ASP ALA TRP SEQRES 16 A 702 GLY THR ALA PHE TRP ALA GLN ARG MET ASN ASN PHE SER SEQRES 17 A 702 GLU ILE ILE PRO PRO ARG PHE ILE GLY ASP GLY ASN PHE SEQRES 18 A 702 MET ASN PRO GLY LYS LEU LEU ASP TRP LYS ARG PHE SER SEQRES 19 A 702 SER ASP ALA LEU LEU ASP PHE TYR LYS ALA GLU ARG ASP SEQRES 20 A 702 ALA LEU LEU GLU ILE ALA PRO LYS PRO GLN THR THR ASN SEQRES 21 A 702 PHE MET VAL SER ALA GLY CYS THR VAL LEU ASP TYR ASP SEQRES 22 A 702 LYS TRP GLY HIS ASP VAL ASP PHE VAL SER ASN ASP HIS SEQRES 23 A 702 TYR PHE SER PRO GLY GLU ALA HIS PHE ASP GLU MET ALA SEQRES 24 A 702 TYR ALA ALA CYS LEU THR ASP GLY ILE ALA ARG LYS ASN SEQRES 25 A 702 PRO TRP PHE LEU MET GLU HIS SER THR SER ALA VAL ASN SEQRES 26 A 702 TRP ARG PRO THR ASN TYR ARG LEU GLU PRO GLY GLU LEU SEQRES 27 A 702 VAL ARG ASP SER LEU ALA HIS LEU ALA MET GLY ALA ASP SEQRES 28 A 702 ALA ILE CYS TYR PHE GLN TRP ARG GLN SER LYS ALA GLY SEQRES 29 A 702 ALA GLU LYS TRP HIS SER ALA MET VAL PRO HIS ALA GLY SEQRES 30 A 702 PRO ASP SER GLN ILE PHE ARG ASP VAL CYS GLU LEU GLY SEQRES 31 A 702 ALA ASP LEU ASN LYS LEU ALA ASP GLU GLY LEU LEU SER SEQRES 32 A 702 THR LYS LEU VAL LYS SER LYS VAL ALA ILE VAL PHE ASP SEQRES 33 A 702 TYR GLU SER GLN TRP ALA THR GLU HIS THR ALA THR PRO SEQRES 34 A 702 THR GLN GLU VAL ARG HIS TRP THR GLU PRO LEU ASP TRP SEQRES 35 A 702 PHE ARG ALA LEU ALA ASP ASN GLY LEU THR ALA ASP VAL SEQRES 36 A 702 VAL PRO VAL ARG GLY PRO TRP ASP GLU TYR GLU ALA VAL SEQRES 37 A 702 VAL LEU PRO SER LEU ALA ILE LEU SER GLU GLN THR THR SEQRES 38 A 702 ARG ARG VAL ARG GLU TYR VAL ALA ASN GLY GLY LYS LEU SEQRES 39 A 702 PHE VAL THR TYR TYR THR GLY LEU VAL ASP ASP ARG ASP SEQRES 40 A 702 HIS VAL TRP LEU GLY GLY TYR PRO GLY SER ILE ARG ASP SEQRES 41 A 702 VAL VAL GLY VAL ARG VAL GLU GLU PHE ALA PRO MET GLY SEQRES 42 A 702 THR ASP ALA PRO GLY THR MET ASP HIS LEU ASP LEU ASP SEQRES 43 A 702 ASN GLY THR VAL ALA HIS ASP PHE ALA ASP VAL ILE THR SEQRES 44 A 702 SER VAL ALA ASP THR ALA HIS VAL VAL ALA SER PHE LYS SEQRES 45 A 702 ALA ASP LYS TRP THR GLY PHE ASP GLY ALA PRO ALA ILE SEQRES 46 A 702 THR VAL ASN ASP PHE GLY ASP GLY LYS ALA ALA TYR VAL SEQRES 47 A 702 GLY ALA ARG LEU GLY ARG GLU GLY LEU ALA LYS SER LEU SEQRES 48 A 702 PRO ALA LEU LEU GLU GLU LEU GLY ILE GLU THR SER ALA SEQRES 49 A 702 GLU ASP ASP ARG GLY GLU VAL LEU ARG VAL GLU ARG ALA SEQRES 50 A 702 ASP GLU THR GLY GLU ASN HIS PHE VAL PHE LEU PHE ASN SEQRES 51 A 702 ARG THR HIS ASP VAL ALA VAL VAL ASP VAL GLU GLY GLU SEQRES 52 A 702 PRO LEU VAL ALA SER LEU ALA GLN VAL ASN GLU SER GLU SEQRES 53 A 702 HIS THR ALA ALA ILE GLN PRO ASN GLY VAL LEU VAL VAL SEQRES 54 A 702 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A 801 6 HET PEG A 802 7 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *670(H2 O) HELIX 1 AA1 ASN A 26 TRP A 30 5 5 HELIX 2 AA2 PRO A 31 GLY A 46 1 16 HELIX 3 AA3 SER A 56 GLU A 61 1 6 HELIX 4 AA4 PHE A 69 ALA A 82 1 14 HELIX 5 AA5 PRO A 96 HIS A 103 1 8 HELIX 6 AA6 PRO A 104 LEU A 107 5 4 HELIX 7 AA7 SER A 128 LYS A 147 1 20 HELIX 8 AA8 SER A 170 GLY A 186 1 17 HELIX 9 AA9 THR A 187 TRP A 195 1 9 HELIX 10 AB1 ALA A 198 GLN A 202 5 5 HELIX 11 AB2 ASN A 206 ILE A 210 5 5 HELIX 12 AB3 ASN A 223 ALA A 253 1 31 HELIX 13 AB4 ASP A 271 GLY A 276 1 6 HELIX 14 AB5 PRO A 290 GLU A 292 5 3 HELIX 15 AB6 ALA A 293 ALA A 309 1 17 HELIX 16 AB7 GLY A 336 MET A 348 1 13 HELIX 17 AB8 SER A 380 GLU A 399 1 20 HELIX 18 AB9 ASP A 416 GLU A 424 1 9 HELIX 19 AC1 TRP A 436 ASN A 449 1 14 HELIX 20 AC2 PRO A 461 TYR A 465 5 5 HELIX 21 AC3 SER A 477 ASN A 490 1 14 HELIX 22 AC4 ILE A 518 GLY A 523 1 6 HELIX 23 AC5 ASP A 574 GLY A 578 5 5 HELIX 24 AC6 LEU A 602 LEU A 618 1 17 SHEET 1 AA1 9 GLN A 257 THR A 258 0 SHEET 2 AA1 9 VAL A 152 HIS A 156 1 N TRP A 155 O THR A 258 SHEET 3 AA1 9 ALA A 85 ALA A 89 1 N LEU A 88 O HIS A 156 SHEET 4 AA1 9 LEU A 49 VAL A 52 1 N VAL A 50 O ASP A 87 SHEET 5 AA1 9 TRP A 20 ASP A 24 1 N GLY A 23 O SER A 51 SHEET 6 AA1 9 ALA A 350 TYR A 355 1 O ILE A 353 N TRP A 20 SHEET 7 AA1 9 TRP A 314 GLU A 318 1 N TRP A 314 O ASP A 351 SHEET 8 AA1 9 SER A 283 ASP A 285 1 N ASN A 284 O PHE A 315 SHEET 9 AA1 9 ASN A 260 PHE A 261 1 N PHE A 261 O SER A 283 SHEET 1 AA2 5 LYS A 405 LEU A 406 0 SHEET 2 AA2 5 VAL A 631 ALA A 637 -1 O ALA A 637 N LYS A 405 SHEET 3 AA2 5 HIS A 644 ASN A 650 -1 O PHE A 645 N ARG A 636 SHEET 4 AA2 5 THR A 678 LYS A 690 -1 O LEU A 687 N LEU A 648 SHEET 5 AA2 5 ALA A 656 ASP A 659 -1 N ALA A 656 O ILE A 681 SHEET 1 AA3 5 LYS A 405 LEU A 406 0 SHEET 2 AA3 5 VAL A 631 ALA A 637 -1 O ALA A 637 N LYS A 405 SHEET 3 AA3 5 HIS A 644 ASN A 650 -1 O PHE A 645 N ARG A 636 SHEET 4 AA3 5 THR A 678 LYS A 690 -1 O LEU A 687 N LEU A 648 SHEET 5 AA3 5 GLU A 663 ASN A 673 -1 N ASN A 673 O THR A 678 SHEET 1 AA410 ASP A 454 PRO A 457 0 SHEET 2 AA410 VAL A 411 PHE A 415 1 N VAL A 411 O ASP A 454 SHEET 3 AA410 ALA A 467 LEU A 470 1 O VAL A 469 N ALA A 412 SHEET 4 AA410 LYS A 493 THR A 497 1 O PHE A 495 N LEU A 470 SHEET 5 AA410 GLY A 593 VAL A 598 1 O ALA A 596 N LEU A 494 SHEET 6 AA410 PRO A 583 PHE A 590 -1 N THR A 586 O TYR A 597 SHEET 7 AA410 ALA A 565 LYS A 572 -1 N VAL A 568 O ILE A 585 SHEET 8 AA410 LEU A 543 LEU A 545 -1 N ASP A 544 O LYS A 572 SHEET 9 AA410 VAL A 550 VAL A 561 -1 O ALA A 551 N LEU A 543 SHEET 10 AA410 VAL A 524 PRO A 531 -1 N ALA A 530 O ALA A 555 SHEET 1 AA510 ASP A 454 PRO A 457 0 SHEET 2 AA510 VAL A 411 PHE A 415 1 N VAL A 411 O ASP A 454 SHEET 3 AA510 ALA A 467 LEU A 470 1 O VAL A 469 N ALA A 412 SHEET 4 AA510 LYS A 493 THR A 497 1 O PHE A 495 N LEU A 470 SHEET 5 AA510 GLY A 593 VAL A 598 1 O ALA A 596 N LEU A 494 SHEET 6 AA510 PRO A 583 PHE A 590 -1 N THR A 586 O TYR A 597 SHEET 7 AA510 ALA A 565 LYS A 572 -1 N VAL A 568 O ILE A 585 SHEET 8 AA510 LEU A 543 LEU A 545 -1 N ASP A 544 O LYS A 572 SHEET 9 AA510 VAL A 550 VAL A 561 -1 O ALA A 551 N LEU A 543 SHEET 10 AA510 ALA A 600 ARG A 601 -1 O ARG A 601 N HIS A 552 CISPEP 1 PHE A 356 GLN A 357 0 -0.32 CISPEP 2 TYR A 514 PRO A 515 0 -14.83 CRYST1 145.642 145.642 66.845 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006866 0.003964 0.000000 0.00000 SCALE2 0.000000 0.007928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014960 0.00000