data_8ICO # _entry.id 8ICO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ICO pdb_00008ico 10.2210/pdb8ico/pdb RCSB PDE076 ? ? WWPDB D_1000179993 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 7ICE 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CACL2' unspecified PDB 7ICF ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR-DAY SOAK) ; unspecified PDB 7ICG 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF CDCL2' unspecified PDB 7ICH 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF COCL2' unspecified PDB 7ICI 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR)' unspecified PDB 7ICJ 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR)' unspecified PDB 7ICK 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF MGCL2' unspecified PDB 7ICL 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR)' unspecified PDB 7ICM 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR)' unspecified PDB 7ICN 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2' unspecified PDB 7ICO 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2' unspecified PDB 7ICP 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR)' unspecified PDB 7ICQ 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2' unspecified PDB 7ICR 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2' unspecified PDB 7ICS 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2' unspecified PDB 7ICT 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2 AND MGCL2' unspecified PDB 7ICU 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR)' unspecified PDB 7ICV ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND IN THE ABSENCE OF NACL ; unspecified PDB 8ICA ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CACL2 (5 MILLIMOLAR) ; unspecified PDB 8ICB ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR ; unspecified PDB 8ICC ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NO 5'-PHOSPHATE) ; unspecified PDB 8ICE ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CDCL2 (1 MILLIMOLAR) ; unspecified PDB 8ICF ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND MGCL2 (50 MILLIMOLAR) ; unspecified PDB 8ICG ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICH ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICI ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICJ ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 ; unspecified PDB 8ICK ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICL ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND NICL2 (5 MILLIMOLAR) ; unspecified PDB 8ICM ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) ; unspecified PDB 8ICN ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICP ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICQ ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) AND MNCL2 (0.5 MILLIMOLAR) ; unspecified PDB 8ICR ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICS ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICT ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICU ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICV ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICW ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICX ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 8ICY ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 ; unspecified PDB 8ICZ ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) ; unspecified PDB 9ICA ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND MNCL2 ; unspecified PDB 9ICB ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 ; unspecified PDB 9ICC ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 ; unspecified PDB 9ICE ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CUCL2 (0.1 MILLIMOLAR) ; unspecified PDB 9ICF ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 ; unspecified PDB 9ICG ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) ; unspecified PDB 9ICH ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) ; unspecified PDB 9ICI ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) ; unspecified PDB 9ICJ 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA' unspecified PDB 9ICK 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR' unspecified PDB 9ICL 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2' unspecified PDB 9ICM ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) ; unspecified PDB 9ICN ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MGCL2 ; unspecified PDB 9ICO 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF DTTP AND MGCL2' unspecified PDB 9ICP ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) ; unspecified PDB 9ICQ ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 9ICR ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 ; unspecified PDB 9ICS ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'-DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP AND MNCL2 ; unspecified PDB 9ICT ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 ; unspecified PDB 9ICU ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; unspecified PDB 9ICV ;DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 ; unspecified PDB 9ICW 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; NATIVE STRUCTURE' unspecified PDB 9ICX 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA (NON GAPPED DNA ONLY)' unspecified PDB 9ICY 'DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NON GAPPED DNA ONLY)' unspecified PDB 1ZQA ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH 7.5 ; unspecified PDB 1ZQB 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR)' unspecified PDB 1ZQC 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR)' unspecified PDB 1ZQD 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR)' unspecified PDB 1ZQE ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) ; unspecified PDB 1ZQF 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR)' unspecified PDB 1ZQG ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 6.5 ; unspecified PDB 1ZQH ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL MOTHER LIQUOR AT PH 7.5 ; unspecified PDB 1ZQI 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR)' unspecified PDB 1ZQJ ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND MGCL2 (15 MILLIMOLAR) ; unspecified PDB 1ZQK ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND MGCL2 (75 MILLIMOLAR) ; unspecified PDB 1ZQL ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND MGCL2 (15 MILLIMOLAR) ; unspecified PDB 1ZQM 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR)' unspecified PDB 1ZQN ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR) ; unspecified PDB 1ZQO ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR) ; unspecified PDB 1ZQP ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND NACL (75 MILLIMOLAR) ; unspecified PDB 1ZQQ ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND NACL (15 MILLIMOLAR) ; unspecified PDB 1ZQR 'DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2' unspecified PDB 1ZQS 'DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR)' unspecified PDB 1ZQT ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND ZNCL2 (0.02 MILLIMOLAR) ; unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 8ICO _pdbx_database_status.recvd_initial_deposition_date 1995-12-15 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pelletier, H.' 1 'Sawaya, M.R.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta.' Biochemistry 35 12762 12777 1996 BICHAW US 0006-2960 0033 ? 8841119 10.1021/bi9529566 1 'Crystal Structures of Human DNA Polymerase Beta Complexed with Nicked and Gapped DNA Substrates' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 2 'The Role of Thumb Movement and Template Bending in Polymerase Fidelity' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 3 ;Crystal Structures of Human DNA Polymerase Beta Complexed with DNA; Implications for Catalytic Mechanism, Processivity, and Fidelity ; Biochemistry 35 12742 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 4 'Characterization of the Metal Ion-Binding HHH Motifs in Human DNA Polymerase Beta by X-Ray Structural Analysis' Biochemistry 35 12778 ? 1996 BICHAW US 0006-2960 0033 ? ? ? 5 'Polymerase Structures and Mechanism' Science 266 2025 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? 6 'Structures of Ternary Complexes of Rat DNA Polymerase Beta, a DNA Template- Primer, and ddCTP' Science 264 1891 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? 7 'Crystal Structure of Rat DNA Polymerase Beta: Evidence for a Common Polymerase Mechanism' Science 264 1930 ? 1994 SCIEAS US 0036-8075 0038 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pelletier, H.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Wolfle, W.' 3 ? primary 'Wilson, S.H.' 4 ? primary 'Kraut, J.' 5 ? 1 'Sawaya, M.R.' 6 ? 1 'Rawson, T.' 7 ? 1 'Wilson, S.H.' 8 ? 1 'Kraut, J.' 9 ? 1 'Pelletier, H.' 10 ? 2 'Pelletier, H.' 11 ? 3 'Pelletier, H.' 12 ? 3 'Sawaya, M.R.' 13 ? 3 'Wolfle, W.' 14 ? 3 'Wilson, S.H.' 15 ? 3 'Kraut, J.' 16 ? 4 'Pelletier, H.' 17 ? 4 'Sawaya, M.R.' 18 ? 5 'Pelletier, H.' 19 ? 6 'Pelletier, H.' 20 ? 6 'Sawaya, M.R.' 21 ? 6 'Kumar, A.' 22 ? 6 'Wilson, S.H.' 23 ? 6 'Kraut, J.' 24 ? 7 'Sawaya, M.R.' 25 ? 7 'Pelletier, H.' 26 ? 7 'Kumar, A.' 27 ? 7 'Wilson, S.H.' 28 ? 7 'Kraut, J.' 29 ? # _cell.entry_id 8ICO _cell.length_a 179.687 _cell.length_b 57.631 _cell.length_c 48.285 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ICO _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3') ; 2434.643 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3') ; 2112.422 1 ? ? ? ? 3 polymer man 'PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7))' 38241.672 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 non-polymer syn "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE" 507.181 1 ? ? ? ? 7 water nat water 18.015 141 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DA)(DT)(DT)(DA)(DG)(DA)(DA)' CATTAGAA T ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DT)(DA)(DA)(DT)(DG)' TCTAATG P ? 3 'polypeptide(L)' no no ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; ;MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DT n 1 4 DT n 1 5 DA n 1 6 DG n 1 7 DA n 1 8 DA n 2 1 DT n 2 2 DC n 2 3 DT n 2 4 DA n 2 5 DA n 2 6 DT n 2 7 DG n 3 1 MET n 3 2 SER n 3 3 LYS n 3 4 ARG n 3 5 LYS n 3 6 ALA n 3 7 PRO n 3 8 GLN n 3 9 GLU n 3 10 THR n 3 11 LEU n 3 12 ASN n 3 13 GLY n 3 14 GLY n 3 15 ILE n 3 16 THR n 3 17 ASP n 3 18 MET n 3 19 LEU n 3 20 THR n 3 21 GLU n 3 22 LEU n 3 23 ALA n 3 24 ASN n 3 25 PHE n 3 26 GLU n 3 27 LYS n 3 28 ASN n 3 29 VAL n 3 30 SER n 3 31 GLN n 3 32 ALA n 3 33 ILE n 3 34 HIS n 3 35 LYS n 3 36 TYR n 3 37 ASN n 3 38 ALA n 3 39 TYR n 3 40 ARG n 3 41 LYS n 3 42 ALA n 3 43 ALA n 3 44 SER n 3 45 VAL n 3 46 ILE n 3 47 ALA n 3 48 LYS n 3 49 TYR n 3 50 PRO n 3 51 HIS n 3 52 LYS n 3 53 ILE n 3 54 LYS n 3 55 SER n 3 56 GLY n 3 57 ALA n 3 58 GLU n 3 59 ALA n 3 60 LYS n 3 61 LYS n 3 62 LEU n 3 63 PRO n 3 64 GLY n 3 65 VAL n 3 66 GLY n 3 67 THR n 3 68 LYS n 3 69 ILE n 3 70 ALA n 3 71 GLU n 3 72 LYS n 3 73 ILE n 3 74 ASP n 3 75 GLU n 3 76 PHE n 3 77 LEU n 3 78 ALA n 3 79 THR n 3 80 GLY n 3 81 LYS n 3 82 LEU n 3 83 ARG n 3 84 LYS n 3 85 LEU n 3 86 GLU n 3 87 LYS n 3 88 ILE n 3 89 ARG n 3 90 GLN n 3 91 ASP n 3 92 ASP n 3 93 THR n 3 94 SER n 3 95 SER n 3 96 SER n 3 97 ILE n 3 98 ASN n 3 99 PHE n 3 100 LEU n 3 101 THR n 3 102 ARG n 3 103 VAL n 3 104 SER n 3 105 GLY n 3 106 ILE n 3 107 GLY n 3 108 PRO n 3 109 SER n 3 110 ALA n 3 111 ALA n 3 112 ARG n 3 113 LYS n 3 114 PHE n 3 115 VAL n 3 116 ASP n 3 117 GLU n 3 118 GLY n 3 119 ILE n 3 120 LYS n 3 121 THR n 3 122 LEU n 3 123 GLU n 3 124 ASP n 3 125 LEU n 3 126 ARG n 3 127 LYS n 3 128 ASN n 3 129 GLU n 3 130 ASP n 3 131 LYS n 3 132 LEU n 3 133 ASN n 3 134 HIS n 3 135 HIS n 3 136 GLN n 3 137 ARG n 3 138 ILE n 3 139 GLY n 3 140 LEU n 3 141 LYS n 3 142 TYR n 3 143 PHE n 3 144 GLY n 3 145 ASP n 3 146 PHE n 3 147 GLU n 3 148 LYS n 3 149 ARG n 3 150 ILE n 3 151 PRO n 3 152 ARG n 3 153 GLU n 3 154 GLU n 3 155 MET n 3 156 LEU n 3 157 GLN n 3 158 MET n 3 159 GLN n 3 160 ASP n 3 161 ILE n 3 162 VAL n 3 163 LEU n 3 164 ASN n 3 165 GLU n 3 166 VAL n 3 167 LYS n 3 168 LYS n 3 169 VAL n 3 170 ASP n 3 171 SER n 3 172 GLU n 3 173 TYR n 3 174 ILE n 3 175 ALA n 3 176 THR n 3 177 VAL n 3 178 CYS n 3 179 GLY n 3 180 SER n 3 181 PHE n 3 182 ARG n 3 183 ARG n 3 184 GLY n 3 185 ALA n 3 186 GLU n 3 187 SER n 3 188 SER n 3 189 GLY n 3 190 ASP n 3 191 MET n 3 192 ASP n 3 193 VAL n 3 194 LEU n 3 195 LEU n 3 196 THR n 3 197 HIS n 3 198 PRO n 3 199 SER n 3 200 PHE n 3 201 THR n 3 202 SER n 3 203 GLU n 3 204 SER n 3 205 THR n 3 206 LYS n 3 207 GLN n 3 208 PRO n 3 209 LYS n 3 210 LEU n 3 211 LEU n 3 212 HIS n 3 213 GLN n 3 214 VAL n 3 215 VAL n 3 216 GLU n 3 217 GLN n 3 218 LEU n 3 219 GLN n 3 220 LYS n 3 221 VAL n 3 222 HIS n 3 223 PHE n 3 224 ILE n 3 225 THR n 3 226 ASP n 3 227 THR n 3 228 LEU n 3 229 SER n 3 230 LYS n 3 231 GLY n 3 232 GLU n 3 233 THR n 3 234 LYS n 3 235 PHE n 3 236 MET n 3 237 GLY n 3 238 VAL n 3 239 CYS n 3 240 GLN n 3 241 LEU n 3 242 PRO n 3 243 SER n 3 244 LYS n 3 245 ASN n 3 246 ASP n 3 247 GLU n 3 248 LYS n 3 249 GLU n 3 250 TYR n 3 251 PRO n 3 252 HIS n 3 253 ARG n 3 254 ARG n 3 255 ILE n 3 256 ASP n 3 257 ILE n 3 258 ARG n 3 259 LEU n 3 260 ILE n 3 261 PRO n 3 262 LYS n 3 263 ASP n 3 264 GLN n 3 265 TYR n 3 266 TYR n 3 267 CYS n 3 268 GLY n 3 269 VAL n 3 270 LEU n 3 271 TYR n 3 272 PHE n 3 273 THR n 3 274 GLY n 3 275 SER n 3 276 ASP n 3 277 ILE n 3 278 PHE n 3 279 ASN n 3 280 LYS n 3 281 ASN n 3 282 MET n 3 283 ARG n 3 284 ALA n 3 285 HIS n 3 286 ALA n 3 287 LEU n 3 288 GLU n 3 289 LYS n 3 290 GLY n 3 291 PHE n 3 292 THR n 3 293 ILE n 3 294 ASN n 3 295 GLU n 3 296 TYR n 3 297 THR n 3 298 ILE n 3 299 ARG n 3 300 PRO n 3 301 LEU n 3 302 GLY n 3 303 VAL n 3 304 THR n 3 305 GLY n 3 306 VAL n 3 307 ALA n 3 308 GLY n 3 309 GLU n 3 310 PRO n 3 311 LEU n 3 312 PRO n 3 313 VAL n 3 314 ASP n 3 315 SER n 3 316 GLU n 3 317 LYS n 3 318 ASP n 3 319 ILE n 3 320 PHE n 3 321 ASP n 3 322 TYR n 3 323 ILE n 3 324 GLN n 3 325 TRP n 3 326 LYS n 3 327 TYR n 3 328 ARG n 3 329 GLU n 3 330 PRO n 3 331 LYS n 3 332 ASP n 3 333 ARG n 3 334 SER n 3 335 GLU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP DPOB_HUMAN 3 ? ? P06746 ? 2 PDB 8ICO 1 ? ? 8ICO ? 3 PDB 8ICO 2 ? ? 8ICO ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ICO A 2 ? 335 ? P06746 1 ? 334 ? 2 335 2 2 8ICO T 1 ? 8 ? 8ICO 1 ? 8 ? 1 8 3 3 8ICO P 1 ? 7 ? 8ICO 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 AZT non-polymer . "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O13 P3' 507.181 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 8ICO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_percent_sol 58.4000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;THIS ENTRY DESCRIBES THE STRUCTURE THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA COMPLEXED WITH 7 BASE PAIRS OF DNA (SEE ENTRY 9ICJ AND REFERENCE 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR AZT-TP, 1 MILLIMOLAR MNCL2, 5 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR THIS STRUCTURE. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SDMS _diffrn_detector.pdbx_collection_date 1995-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 8ICO _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 2.700 _reflns.number_obs 13094 _reflns.number_all ? _reflns.percent_possible_obs 91.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0480000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.800 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.700 _reflns_shell.d_res_low 2.800 _reflns_shell.percent_possible_all 74.00 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.1580000 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.300 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 8ICO _refine.ls_number_reflns_obs 13094 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.000 _refine.ls_d_res_high 2.700 _refine.ls_percent_reflns_obs 91.000 _refine.ls_R_factor_obs 0.1810000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MOEWS _refine.solvent_model_param_ksol 0.800 _refine.solvent_model_param_bsol 775.8 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 8ICB _refine.pdbx_method_to_determine_struct 'DIFFERENCE FOURIER' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'STANDARD TNT' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2623 _refine_hist.pdbx_number_atoms_nucleic_acid 289 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 3087 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.018 ? 0.020 3004 'X-RAY DIFFRACTION' ? t_angle_deg 2.900 ? 3.000 4061 'X-RAY DIFFRACTION' ? t_dihedral_angle_d 18.90 ? ? 1800 'X-RAY DIFFRACTION' ? t_incorr_chiral_ct 0 ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes 0.015 ? 0.020 73 'X-RAY DIFFRACTION' ? t_gen_planes 0.006 ? 0.020 395 'X-RAY DIFFRACTION' ? t_it 5.600 ? 6.000 3004 'X-RAY DIFFRACTION' ? t_nbd 0.023 ? 0.020 163 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 8ICO _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1810000 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 8ICO _struct.title ;DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND MNCL2 (5 MILLIMOLAR) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 8ICO _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text ;DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, TRANSFERASE-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 7 ? K N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 A GLY C 13 ? ASN C 28 ? GLY A 13 ASN A 28 1 ? 16 HELX_P HELX_P2 B ILE C 33 ? LYS C 48 ? ILE A 33 LYS A 48 1 ? 16 HELX_P HELX_P3 C SER C 55 ? LYS C 61 ? SER A 55 LYS A 61 1 ? 7 HELX_P HELX_P4 D THR C 67 ? THR C 79 ? THR A 67 THR A 79 1 ? 13 HELX_P HELX_P5 E ARG C 83 ? GLN C 90 ? ARG A 83 GLN A 90 1 ? 8 HELX_P HELX_P6 F ASP C 92 ? ARG C 102 ? ASP A 92 ARG A 102 1 ? 11 HELX_P HELX_P7 G PRO C 108 ? GLY C 118 ? PRO A 108 GLY A 118 1 ? 11 HELX_P HELX_P8 H LEU C 122 ? LYS C 131 ? LEU A 122 LYS A 131 1 ? 10 HELX_P HELX_P9 I HIS C 134 ? GLU C 147 ? HIS A 134 GLU A 147 1 ? 14 HELX_P HELX_P10 J ARG C 152 ? VAL C 169 ? ARG A 152 VAL A 169 1 ? 18 HELX_P HELX_P11 K GLY C 179 ? GLY C 184 ? GLY A 179 GLY A 184 1 ? 6 HELX_P HELX_P12 L PRO C 208 ? LYS C 220 ? PRO A 208 LYS A 220 5 ? 13 HELX_P HELX_P13 M LYS C 262 ? THR C 273 ? LYS A 262 THR A 273 5 ? 12 HELX_P HELX_P14 N ASP C 276 ? GLU C 288 ? ASP A 276 GLU A 288 1 ? 13 HELX_P HELX_P15 O GLU C 316 ? ILE C 323 ? GLU A 316 ILE A 323 1 ? 8 HELX_P HELX_P16 P PRO C 330 ? ASP C 332 ? PRO A 330 ASP A 332 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B DT 6 OP1 ? ? ? 1_555 F NA . NA ? ? P DT 6 A NA 341 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc2 metalc ? ? C LYS 60 O ? ? ? 1_555 G NA . NA ? ? A LYS 60 A NA 342 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc3 metalc ? ? C LEU 62 O ? ? ? 1_555 G NA . NA ? ? A LEU 62 A NA 342 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc4 metalc ? ? C THR 101 O ? ? ? 1_555 F NA . NA ? ? A THR 101 A NA 341 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc5 metalc ? ? C VAL 103 O ? ? ? 1_555 F NA . NA ? ? A VAL 103 A NA 341 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc6 metalc ? ? C ILE 106 O ? ? ? 1_555 F NA . NA ? ? A ILE 106 A NA 341 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc7 metalc ? ? C ASP 190 OD1 ? ? ? 1_555 D MN . MN ? ? A ASP 190 A MN 339 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc8 metalc ? ? C ASP 190 OD2 ? ? ? 1_555 E MN . MN ? ? A ASP 190 A MN 340 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc9 metalc ? ? H AZT . O1A ? ? ? 1_555 D MN . MN ? ? A AZT 338 A MN 339 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc10 metalc ? ? H AZT . O2B ? ? ? 1_555 D MN . MN ? ? A AZT 338 A MN 339 1_555 ? ? ? ? ? ? ? 2.450 ? ? metalc11 metalc ? ? H AZT . O1G ? ? ? 1_555 D MN . MN ? ? A AZT 338 A MN 339 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc12 metalc ? ? D MN . MN ? ? ? 1_555 K HOH . O ? ? A MN 339 A HOH 653 1_555 ? ? ? ? ? ? ? 2.750 ? ? metalc13 metalc ? ? F NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 341 A HOH 601 1_555 ? ? ? ? ? ? ? 2.377 ? ? hydrog1 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 7 N2 ? ? T DC 1 P DG 7 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 6 N3 ? ? T DA 2 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 6 O4 ? ? T DA 2 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 5 N1 ? ? T DT 3 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 5 N6 ? ? T DT 3 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? T DT 4 P DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 4 N6 ? ? T DT 4 P DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 3 N3 ? ? T DA 5 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 3 O4 ? ? T DA 5 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 2 N3 ? ? T DG 6 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 2 O2 ? ? T DG 6 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 2 N4 ? ? T DG 6 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 1 N3 ? ? T DA 7 P DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 1 O4 ? ? T DA 7 P DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.98 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE C 174 ? CYS C 178 ? ILE A 174 CYS A 178 A 2 MET C 191 ? THR C 196 ? MET A 191 THR A 196 A 3 ARG C 253 ? ARG C 258 ? ARG A 253 ARG A 258 A 4 LYS C 234 ? CYS C 239 ? LYS A 234 CYS A 239 A 5 ILE C 224 ? THR C 227 ? ILE A 224 THR A 227 B 1 PHE C 291 ? ASN C 294 ? PHE A 291 ASN A 294 B 2 THR C 297 ? PRO C 300 ? THR A 297 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE C 174 ? O ILE A 174 N THR C 196 ? N THR A 196 A 2 3 O MET C 191 ? O MET A 191 N ASP C 256 ? N ASP A 256 A 3 4 O ARG C 253 ? O ARG A 253 N CYS C 239 ? N CYS A 239 A 4 5 O VAL C 238 ? O VAL A 238 N ASP C 226 ? N ASP A 226 B 1 2 O THR C 292 ? O THR A 292 N ARG C 299 ? N ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 339 ? 4 'BINDING SITE FOR RESIDUE MN A 339' AC2 Software A MN 340 ? 5 'BINDING SITE FOR RESIDUE MN A 340' AC3 Software A NA 341 ? 6 'BINDING SITE FOR RESIDUE NA A 341' AC4 Software A NA 342 ? 4 'BINDING SITE FOR RESIDUE NA A 342' AC5 Software A AZT 338 ? 17 'BINDING SITE FOR RESIDUE AZT A 338' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP C 190 ? ASP A 190 . ? 1_555 ? 2 AC1 4 ASP C 192 ? ASP A 192 . ? 1_555 ? 3 AC1 4 AZT H . ? AZT A 338 . ? 1_555 ? 4 AC1 4 HOH K . ? HOH A 653 . ? 1_555 ? 5 AC2 5 ASP C 190 ? ASP A 190 . ? 1_555 ? 6 AC2 5 ASP C 192 ? ASP A 192 . ? 1_555 ? 7 AC2 5 ASP C 256 ? ASP A 256 . ? 1_555 ? 8 AC2 5 AZT H . ? AZT A 338 . ? 1_555 ? 9 AC2 5 DG B 7 ? DG P 7 . ? 1_555 ? 10 AC3 6 THR C 101 ? THR A 101 . ? 1_555 ? 11 AC3 6 ARG C 102 ? ARG A 102 . ? 1_555 ? 12 AC3 6 VAL C 103 ? VAL A 103 . ? 1_555 ? 13 AC3 6 ILE C 106 ? ILE A 106 . ? 1_555 ? 14 AC3 6 HOH K . ? HOH A 601 . ? 1_555 ? 15 AC3 6 DT B 6 ? DT P 6 . ? 1_555 ? 16 AC4 4 LYS C 60 ? LYS A 60 . ? 1_555 ? 17 AC4 4 LYS C 61 ? LYS A 61 . ? 1_555 ? 18 AC4 4 LEU C 62 ? LEU A 62 . ? 1_555 ? 19 AC4 4 VAL C 65 ? VAL A 65 . ? 1_555 ? 20 AC5 17 ARG C 149 ? ARG A 149 . ? 1_555 ? 21 AC5 17 GLY C 179 ? GLY A 179 . ? 1_555 ? 22 AC5 17 SER C 180 ? SER A 180 . ? 1_555 ? 23 AC5 17 ARG C 183 ? ARG A 183 . ? 1_555 ? 24 AC5 17 SER C 188 ? SER A 188 . ? 1_555 ? 25 AC5 17 GLY C 189 ? GLY A 189 . ? 1_555 ? 26 AC5 17 ASP C 190 ? ASP A 190 . ? 1_555 ? 27 AC5 17 ASP C 192 ? ASP A 192 . ? 1_555 ? 28 AC5 17 TYR C 271 ? TYR A 271 . ? 1_555 ? 29 AC5 17 PHE C 272 ? PHE A 272 . ? 1_555 ? 30 AC5 17 THR C 273 ? THR A 273 . ? 1_555 ? 31 AC5 17 GLY C 274 ? GLY A 274 . ? 1_555 ? 32 AC5 17 MN D . ? MN A 339 . ? 1_555 ? 33 AC5 17 MN E . ? MN A 340 . ? 1_555 ? 34 AC5 17 HOH K . ? HOH A 631 . ? 1_555 ? 35 AC5 17 HOH K . ? HOH A 653 . ? 1_555 ? 36 AC5 17 DG B 7 ? DG P 7 . ? 1_555 ? # _database_PDB_matrix.entry_id 8ICO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 8ICO _atom_sites.fract_transf_matrix[1][1] 0.005565 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017352 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020710 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C T . n A 1 2 DA 2 2 2 DA A T . n A 1 3 DT 3 3 3 DT T T . n A 1 4 DT 4 4 4 DT T T . n A 1 5 DA 5 5 5 DA A T . n A 1 6 DG 6 6 6 DG G T . n A 1 7 DA 7 7 7 DA A T . n A 1 8 DA 8 8 8 DA A T . n B 2 1 DT 1 1 1 DT T P . n B 2 2 DC 2 2 2 DC C P . n B 2 3 DT 3 3 3 DT T P . n B 2 4 DA 4 4 4 DA A P . n B 2 5 DA 5 5 5 DA A P . n B 2 6 DT 6 6 6 DT T P . n B 2 7 DG 7 7 7 DG G P . n C 3 1 MET 1 1 ? ? ? A . n C 3 2 SER 2 2 ? ? ? A . n C 3 3 LYS 3 3 ? ? ? A . n C 3 4 ARG 4 4 ? ? ? A . n C 3 5 LYS 5 5 ? ? ? A . n C 3 6 ALA 6 6 ? ? ? A . n C 3 7 PRO 7 7 ? ? ? A . n C 3 8 GLN 8 8 ? ? ? A . n C 3 9 GLU 9 9 9 GLU GLU A . n C 3 10 THR 10 10 10 THR THR A . n C 3 11 LEU 11 11 11 LEU LEU A . n C 3 12 ASN 12 12 12 ASN ASN A . n C 3 13 GLY 13 13 13 GLY GLY A . n C 3 14 GLY 14 14 14 GLY GLY A . n C 3 15 ILE 15 15 15 ILE ILE A . n C 3 16 THR 16 16 16 THR THR A . n C 3 17 ASP 17 17 17 ASP ASP A . n C 3 18 MET 18 18 18 MET MET A . n C 3 19 LEU 19 19 19 LEU LEU A . n C 3 20 THR 20 20 20 THR THR A . n C 3 21 GLU 21 21 21 GLU GLU A . n C 3 22 LEU 22 22 22 LEU LEU A . n C 3 23 ALA 23 23 23 ALA ALA A . n C 3 24 ASN 24 24 24 ASN ASN A . n C 3 25 PHE 25 25 25 PHE PHE A . n C 3 26 GLU 26 26 26 GLU GLU A . n C 3 27 LYS 27 27 27 LYS LYS A . n C 3 28 ASN 28 28 28 ASN ASN A . n C 3 29 VAL 29 29 29 VAL VAL A . n C 3 30 SER 30 30 30 SER SER A . n C 3 31 GLN 31 31 31 GLN GLN A . n C 3 32 ALA 32 32 32 ALA ALA A . n C 3 33 ILE 33 33 33 ILE ILE A . n C 3 34 HIS 34 34 34 HIS HIS A . n C 3 35 LYS 35 35 35 LYS LYS A . n C 3 36 TYR 36 36 36 TYR TYR A . n C 3 37 ASN 37 37 37 ASN ASN A . n C 3 38 ALA 38 38 38 ALA ALA A . n C 3 39 TYR 39 39 39 TYR TYR A . n C 3 40 ARG 40 40 40 ARG ARG A . n C 3 41 LYS 41 41 41 LYS LYS A . n C 3 42 ALA 42 42 42 ALA ALA A . n C 3 43 ALA 43 43 43 ALA ALA A . n C 3 44 SER 44 44 44 SER SER A . n C 3 45 VAL 45 45 45 VAL VAL A . n C 3 46 ILE 46 46 46 ILE ILE A . n C 3 47 ALA 47 47 47 ALA ALA A . n C 3 48 LYS 48 48 48 LYS LYS A . n C 3 49 TYR 49 49 49 TYR TYR A . n C 3 50 PRO 50 50 50 PRO PRO A . n C 3 51 HIS 51 51 51 HIS HIS A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 ILE 53 53 53 ILE ILE A . n C 3 54 LYS 54 54 54 LYS LYS A . n C 3 55 SER 55 55 55 SER SER A . n C 3 56 GLY 56 56 56 GLY GLY A . n C 3 57 ALA 57 57 57 ALA ALA A . n C 3 58 GLU 58 58 58 GLU GLU A . n C 3 59 ALA 59 59 59 ALA ALA A . n C 3 60 LYS 60 60 60 LYS LYS A . n C 3 61 LYS 61 61 61 LYS LYS A . n C 3 62 LEU 62 62 62 LEU LEU A . n C 3 63 PRO 63 63 63 PRO PRO A . n C 3 64 GLY 64 64 64 GLY GLY A . n C 3 65 VAL 65 65 65 VAL VAL A . n C 3 66 GLY 66 66 66 GLY GLY A . n C 3 67 THR 67 67 67 THR THR A . n C 3 68 LYS 68 68 68 LYS LYS A . n C 3 69 ILE 69 69 69 ILE ILE A . n C 3 70 ALA 70 70 70 ALA ALA A . n C 3 71 GLU 71 71 71 GLU GLU A . n C 3 72 LYS 72 72 72 LYS LYS A . n C 3 73 ILE 73 73 73 ILE ILE A . n C 3 74 ASP 74 74 74 ASP ASP A . n C 3 75 GLU 75 75 75 GLU GLU A . n C 3 76 PHE 76 76 76 PHE PHE A . n C 3 77 LEU 77 77 77 LEU LEU A . n C 3 78 ALA 78 78 78 ALA ALA A . n C 3 79 THR 79 79 79 THR THR A . n C 3 80 GLY 80 80 80 GLY GLY A . n C 3 81 LYS 81 81 81 LYS LYS A . n C 3 82 LEU 82 82 82 LEU LEU A . n C 3 83 ARG 83 83 83 ARG ARG A . n C 3 84 LYS 84 84 84 LYS LYS A . n C 3 85 LEU 85 85 85 LEU LEU A . n C 3 86 GLU 86 86 86 GLU GLU A . n C 3 87 LYS 87 87 87 LYS LYS A . n C 3 88 ILE 88 88 88 ILE ILE A . n C 3 89 ARG 89 89 89 ARG ARG A . n C 3 90 GLN 90 90 90 GLN GLN A . n C 3 91 ASP 91 91 91 ASP ASP A . n C 3 92 ASP 92 92 92 ASP ASP A . n C 3 93 THR 93 93 93 THR THR A . n C 3 94 SER 94 94 94 SER SER A . n C 3 95 SER 95 95 95 SER SER A . n C 3 96 SER 96 96 96 SER SER A . n C 3 97 ILE 97 97 97 ILE ILE A . n C 3 98 ASN 98 98 98 ASN ASN A . n C 3 99 PHE 99 99 99 PHE PHE A . n C 3 100 LEU 100 100 100 LEU LEU A . n C 3 101 THR 101 101 101 THR THR A . n C 3 102 ARG 102 102 102 ARG ARG A . n C 3 103 VAL 103 103 103 VAL VAL A . n C 3 104 SER 104 104 104 SER SER A . n C 3 105 GLY 105 105 105 GLY GLY A . n C 3 106 ILE 106 106 106 ILE ILE A . n C 3 107 GLY 107 107 107 GLY GLY A . n C 3 108 PRO 108 108 108 PRO PRO A . n C 3 109 SER 109 109 109 SER SER A . n C 3 110 ALA 110 110 110 ALA ALA A . n C 3 111 ALA 111 111 111 ALA ALA A . n C 3 112 ARG 112 112 112 ARG ARG A . n C 3 113 LYS 113 113 113 LYS LYS A . n C 3 114 PHE 114 114 114 PHE PHE A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 ASP 116 116 116 ASP ASP A . n C 3 117 GLU 117 117 117 GLU GLU A . n C 3 118 GLY 118 118 118 GLY GLY A . n C 3 119 ILE 119 119 119 ILE ILE A . n C 3 120 LYS 120 120 120 LYS LYS A . n C 3 121 THR 121 121 121 THR THR A . n C 3 122 LEU 122 122 122 LEU LEU A . n C 3 123 GLU 123 123 123 GLU GLU A . n C 3 124 ASP 124 124 124 ASP ASP A . n C 3 125 LEU 125 125 125 LEU LEU A . n C 3 126 ARG 126 126 126 ARG ARG A . n C 3 127 LYS 127 127 127 LYS LYS A . n C 3 128 ASN 128 128 128 ASN ASN A . n C 3 129 GLU 129 129 129 GLU GLU A . n C 3 130 ASP 130 130 130 ASP ASP A . n C 3 131 LYS 131 131 131 LYS LYS A . n C 3 132 LEU 132 132 132 LEU LEU A . n C 3 133 ASN 133 133 133 ASN ASN A . n C 3 134 HIS 134 134 134 HIS HIS A . n C 3 135 HIS 135 135 135 HIS HIS A . n C 3 136 GLN 136 136 136 GLN GLN A . n C 3 137 ARG 137 137 137 ARG ARG A . n C 3 138 ILE 138 138 138 ILE ILE A . n C 3 139 GLY 139 139 139 GLY GLY A . n C 3 140 LEU 140 140 140 LEU LEU A . n C 3 141 LYS 141 141 141 LYS LYS A . n C 3 142 TYR 142 142 142 TYR TYR A . n C 3 143 PHE 143 143 143 PHE PHE A . n C 3 144 GLY 144 144 144 GLY GLY A . n C 3 145 ASP 145 145 145 ASP ASP A . n C 3 146 PHE 146 146 146 PHE PHE A . n C 3 147 GLU 147 147 147 GLU GLU A . n C 3 148 LYS 148 148 148 LYS LYS A . n C 3 149 ARG 149 149 149 ARG ARG A . n C 3 150 ILE 150 150 150 ILE ILE A . n C 3 151 PRO 151 151 151 PRO PRO A . n C 3 152 ARG 152 152 152 ARG ARG A . n C 3 153 GLU 153 153 153 GLU GLU A . n C 3 154 GLU 154 154 154 GLU GLU A . n C 3 155 MET 155 155 155 MET MET A . n C 3 156 LEU 156 156 156 LEU LEU A . n C 3 157 GLN 157 157 157 GLN GLN A . n C 3 158 MET 158 158 158 MET MET A . n C 3 159 GLN 159 159 159 GLN GLN A . n C 3 160 ASP 160 160 160 ASP ASP A . n C 3 161 ILE 161 161 161 ILE ILE A . n C 3 162 VAL 162 162 162 VAL VAL A . n C 3 163 LEU 163 163 163 LEU LEU A . n C 3 164 ASN 164 164 164 ASN ASN A . n C 3 165 GLU 165 165 165 GLU GLU A . n C 3 166 VAL 166 166 166 VAL VAL A . n C 3 167 LYS 167 167 167 LYS LYS A . n C 3 168 LYS 168 168 168 LYS LYS A . n C 3 169 VAL 169 169 169 VAL VAL A . n C 3 170 ASP 170 170 170 ASP ASP A . n C 3 171 SER 171 171 171 SER SER A . n C 3 172 GLU 172 172 172 GLU GLU A . n C 3 173 TYR 173 173 173 TYR TYR A . n C 3 174 ILE 174 174 174 ILE ILE A . n C 3 175 ALA 175 175 175 ALA ALA A . n C 3 176 THR 176 176 176 THR THR A . n C 3 177 VAL 177 177 177 VAL VAL A . n C 3 178 CYS 178 178 178 CYS CYS A . n C 3 179 GLY 179 179 179 GLY GLY A . n C 3 180 SER 180 180 180 SER SER A . n C 3 181 PHE 181 181 181 PHE PHE A . n C 3 182 ARG 182 182 182 ARG ARG A . n C 3 183 ARG 183 183 183 ARG ARG A . n C 3 184 GLY 184 184 184 GLY GLY A . n C 3 185 ALA 185 185 185 ALA ALA A . n C 3 186 GLU 186 186 186 GLU GLU A . n C 3 187 SER 187 187 187 SER SER A . n C 3 188 SER 188 188 188 SER SER A . n C 3 189 GLY 189 189 189 GLY GLY A . n C 3 190 ASP 190 190 190 ASP ASP A . n C 3 191 MET 191 191 191 MET MET A . n C 3 192 ASP 192 192 192 ASP ASP A . n C 3 193 VAL 193 193 193 VAL VAL A . n C 3 194 LEU 194 194 194 LEU LEU A . n C 3 195 LEU 195 195 195 LEU LEU A . n C 3 196 THR 196 196 196 THR THR A . n C 3 197 HIS 197 197 197 HIS HIS A . n C 3 198 PRO 198 198 198 PRO PRO A . n C 3 199 SER 199 199 199 SER SER A . n C 3 200 PHE 200 200 200 PHE PHE A . n C 3 201 THR 201 201 201 THR THR A . n C 3 202 SER 202 202 202 SER SER A . n C 3 203 GLU 203 203 203 GLU GLU A . n C 3 204 SER 204 204 204 SER SER A . n C 3 205 THR 205 205 205 THR THR A . n C 3 206 LYS 206 206 206 LYS LYS A . n C 3 207 GLN 207 207 207 GLN GLN A . n C 3 208 PRO 208 208 208 PRO PRO A . n C 3 209 LYS 209 209 209 LYS LYS A . n C 3 210 LEU 210 210 210 LEU LEU A . n C 3 211 LEU 211 211 211 LEU LEU A . n C 3 212 HIS 212 212 212 HIS HIS A . n C 3 213 GLN 213 213 213 GLN GLN A . n C 3 214 VAL 214 214 214 VAL VAL A . n C 3 215 VAL 215 215 215 VAL VAL A . n C 3 216 GLU 216 216 216 GLU GLU A . n C 3 217 GLN 217 217 217 GLN GLN A . n C 3 218 LEU 218 218 218 LEU LEU A . n C 3 219 GLN 219 219 219 GLN GLN A . n C 3 220 LYS 220 220 220 LYS LYS A . n C 3 221 VAL 221 221 221 VAL VAL A . n C 3 222 HIS 222 222 222 HIS HIS A . n C 3 223 PHE 223 223 223 PHE PHE A . n C 3 224 ILE 224 224 224 ILE ILE A . n C 3 225 THR 225 225 225 THR THR A . n C 3 226 ASP 226 226 226 ASP ASP A . n C 3 227 THR 227 227 227 THR THR A . n C 3 228 LEU 228 228 228 LEU LEU A . n C 3 229 SER 229 229 229 SER SER A . n C 3 230 LYS 230 230 230 LYS LYS A . n C 3 231 GLY 231 231 231 GLY GLY A . n C 3 232 GLU 232 232 232 GLU GLU A . n C 3 233 THR 233 233 233 THR THR A . n C 3 234 LYS 234 234 234 LYS LYS A . n C 3 235 PHE 235 235 235 PHE PHE A . n C 3 236 MET 236 236 236 MET MET A . n C 3 237 GLY 237 237 237 GLY GLY A . n C 3 238 VAL 238 238 238 VAL VAL A . n C 3 239 CYS 239 239 239 CYS CYS A . n C 3 240 GLN 240 240 240 GLN GLN A . n C 3 241 LEU 241 241 241 LEU LEU A . n C 3 242 PRO 242 242 242 PRO PRO A . n C 3 243 SER 243 243 243 SER SER A . n C 3 244 LYS 244 244 244 LYS LYS A . n C 3 245 ASN 245 245 245 ASN ASN A . n C 3 246 ASP 246 246 246 ASP ASP A . n C 3 247 GLU 247 247 247 GLU GLU A . n C 3 248 LYS 248 248 248 LYS LYS A . n C 3 249 GLU 249 249 249 GLU GLU A . n C 3 250 TYR 250 250 250 TYR TYR A . n C 3 251 PRO 251 251 251 PRO PRO A . n C 3 252 HIS 252 252 252 HIS HIS A . n C 3 253 ARG 253 253 253 ARG ARG A . n C 3 254 ARG 254 254 254 ARG ARG A . n C 3 255 ILE 255 255 255 ILE ILE A . n C 3 256 ASP 256 256 256 ASP ASP A . n C 3 257 ILE 257 257 257 ILE ILE A . n C 3 258 ARG 258 258 258 ARG ARG A . n C 3 259 LEU 259 259 259 LEU LEU A . n C 3 260 ILE 260 260 260 ILE ILE A . n C 3 261 PRO 261 261 261 PRO PRO A . n C 3 262 LYS 262 262 262 LYS LYS A . n C 3 263 ASP 263 263 263 ASP ASP A . n C 3 264 GLN 264 264 264 GLN GLN A . n C 3 265 TYR 265 265 265 TYR TYR A . n C 3 266 TYR 266 266 266 TYR TYR A . n C 3 267 CYS 267 267 267 CYS CYS A . n C 3 268 GLY 268 268 268 GLY GLY A . n C 3 269 VAL 269 269 269 VAL VAL A . n C 3 270 LEU 270 270 270 LEU LEU A . n C 3 271 TYR 271 271 271 TYR TYR A . n C 3 272 PHE 272 272 272 PHE PHE A . n C 3 273 THR 273 273 273 THR THR A . n C 3 274 GLY 274 274 274 GLY GLY A . n C 3 275 SER 275 275 275 SER SER A . n C 3 276 ASP 276 276 276 ASP ASP A . n C 3 277 ILE 277 277 277 ILE ILE A . n C 3 278 PHE 278 278 278 PHE PHE A . n C 3 279 ASN 279 279 279 ASN ASN A . n C 3 280 LYS 280 280 280 LYS LYS A . n C 3 281 ASN 281 281 281 ASN ASN A . n C 3 282 MET 282 282 282 MET MET A . n C 3 283 ARG 283 283 283 ARG ARG A . n C 3 284 ALA 284 284 284 ALA ALA A . n C 3 285 HIS 285 285 285 HIS HIS A . n C 3 286 ALA 286 286 286 ALA ALA A . n C 3 287 LEU 287 287 287 LEU LEU A . n C 3 288 GLU 288 288 288 GLU GLU A . n C 3 289 LYS 289 289 289 LYS LYS A . n C 3 290 GLY 290 290 290 GLY GLY A . n C 3 291 PHE 291 291 291 PHE PHE A . n C 3 292 THR 292 292 292 THR THR A . n C 3 293 ILE 293 293 293 ILE ILE A . n C 3 294 ASN 294 294 294 ASN ASN A . n C 3 295 GLU 295 295 295 GLU GLU A . n C 3 296 TYR 296 296 296 TYR TYR A . n C 3 297 THR 297 297 297 THR THR A . n C 3 298 ILE 298 298 298 ILE ILE A . n C 3 299 ARG 299 299 299 ARG ARG A . n C 3 300 PRO 300 300 300 PRO PRO A . n C 3 301 LEU 301 301 301 LEU LEU A . n C 3 302 GLY 302 302 302 GLY GLY A . n C 3 303 VAL 303 303 303 VAL VAL A . n C 3 304 THR 304 304 304 THR THR A . n C 3 305 GLY 305 305 305 GLY GLY A . n C 3 306 VAL 306 306 306 VAL VAL A . n C 3 307 ALA 307 307 307 ALA ALA A . n C 3 308 GLY 308 308 308 GLY GLY A . n C 3 309 GLU 309 309 309 GLU GLU A . n C 3 310 PRO 310 310 310 PRO PRO A . n C 3 311 LEU 311 311 311 LEU LEU A . n C 3 312 PRO 312 312 312 PRO PRO A . n C 3 313 VAL 313 313 313 VAL VAL A . n C 3 314 ASP 314 314 314 ASP ASP A . n C 3 315 SER 315 315 315 SER SER A . n C 3 316 GLU 316 316 316 GLU GLU A . n C 3 317 LYS 317 317 317 LYS LYS A . n C 3 318 ASP 318 318 318 ASP ASP A . n C 3 319 ILE 319 319 319 ILE ILE A . n C 3 320 PHE 320 320 320 PHE PHE A . n C 3 321 ASP 321 321 321 ASP ASP A . n C 3 322 TYR 322 322 322 TYR TYR A . n C 3 323 ILE 323 323 323 ILE ILE A . n C 3 324 GLN 324 324 324 GLN GLN A . n C 3 325 TRP 325 325 325 TRP TRP A . n C 3 326 LYS 326 326 326 LYS LYS A . n C 3 327 TYR 327 327 327 TYR TYR A . n C 3 328 ARG 328 328 328 ARG ARG A . n C 3 329 GLU 329 329 329 GLU GLU A . n C 3 330 PRO 330 330 330 PRO PRO A . n C 3 331 LYS 331 331 331 LYS LYS A . n C 3 332 ASP 332 332 332 ASP ASP A . n C 3 333 ARG 333 333 333 ARG ARG A . n C 3 334 SER 334 334 334 SER SER A . n C 3 335 GLU 335 335 335 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 339 339 MN MN A . E 4 MN 1 340 340 MN MN A . F 5 NA 1 341 341 NA NA A . G 5 NA 1 342 342 NA NA A . H 6 AZT 1 338 338 AZT AZT A . I 7 HOH 1 513 513 HOH HOH T . I 7 HOH 2 517 517 HOH HOH T . I 7 HOH 3 537 537 HOH HOH T . I 7 HOH 4 546 546 HOH HOH T . I 7 HOH 5 547 547 HOH HOH T . I 7 HOH 6 564 564 HOH HOH T . I 7 HOH 7 585 585 HOH HOH T . I 7 HOH 8 594 594 HOH HOH T . I 7 HOH 9 634 634 HOH HOH T . I 7 HOH 10 651 651 HOH HOH T . I 7 HOH 11 652 652 HOH HOH T . J 7 HOH 1 510 510 HOH HOH P . J 7 HOH 2 511 511 HOH HOH P . J 7 HOH 3 524 524 HOH HOH P . J 7 HOH 4 525 525 HOH HOH P . J 7 HOH 5 526 526 HOH HOH P . J 7 HOH 6 534 534 HOH HOH P . J 7 HOH 7 566 566 HOH HOH P . J 7 HOH 8 567 567 HOH HOH P . J 7 HOH 9 568 568 HOH HOH P . J 7 HOH 10 569 569 HOH HOH P . J 7 HOH 11 570 570 HOH HOH P . J 7 HOH 12 571 571 HOH HOH P . J 7 HOH 13 595 595 HOH HOH P . J 7 HOH 14 599 599 HOH HOH P . J 7 HOH 15 613 613 HOH HOH P . J 7 HOH 16 614 614 HOH HOH P . J 7 HOH 17 615 615 HOH HOH P . J 7 HOH 18 635 635 HOH HOH P . J 7 HOH 19 648 648 HOH HOH P . K 7 HOH 1 501 501 HOH HOH A . K 7 HOH 2 502 502 HOH HOH A . K 7 HOH 3 503 503 HOH HOH A . K 7 HOH 4 505 505 HOH HOH A . K 7 HOH 5 506 506 HOH HOH A . K 7 HOH 6 507 507 HOH HOH A . K 7 HOH 7 508 508 HOH HOH A . K 7 HOH 8 509 509 HOH HOH A . K 7 HOH 9 512 512 HOH HOH A . K 7 HOH 10 514 514 HOH HOH A . K 7 HOH 11 515 515 HOH HOH A . K 7 HOH 12 516 516 HOH HOH A . K 7 HOH 13 518 518 HOH HOH A . K 7 HOH 14 519 519 HOH HOH A . K 7 HOH 15 520 520 HOH HOH A . K 7 HOH 16 521 521 HOH HOH A . K 7 HOH 17 523 523 HOH HOH A . K 7 HOH 18 527 527 HOH HOH A . K 7 HOH 19 528 528 HOH HOH A . K 7 HOH 20 529 529 HOH HOH A . K 7 HOH 21 530 530 HOH HOH A . K 7 HOH 22 531 531 HOH HOH A . K 7 HOH 23 533 533 HOH HOH A . K 7 HOH 24 535 535 HOH HOH A . K 7 HOH 25 536 536 HOH HOH A . K 7 HOH 26 538 538 HOH HOH A . K 7 HOH 27 539 539 HOH HOH A . K 7 HOH 28 541 541 HOH HOH A . K 7 HOH 29 542 542 HOH HOH A . K 7 HOH 30 543 543 HOH HOH A . K 7 HOH 31 544 544 HOH HOH A . K 7 HOH 32 545 545 HOH HOH A . K 7 HOH 33 550 550 HOH HOH A . K 7 HOH 34 551 551 HOH HOH A . K 7 HOH 35 552 552 HOH HOH A . K 7 HOH 36 553 553 HOH HOH A . K 7 HOH 37 555 555 HOH HOH A . K 7 HOH 38 556 556 HOH HOH A . K 7 HOH 39 557 557 HOH HOH A . K 7 HOH 40 558 558 HOH HOH A . K 7 HOH 41 560 560 HOH HOH A . K 7 HOH 42 561 561 HOH HOH A . K 7 HOH 43 562 562 HOH HOH A . K 7 HOH 44 563 563 HOH HOH A . K 7 HOH 45 565 565 HOH HOH A . K 7 HOH 46 575 575 HOH HOH A . K 7 HOH 47 576 576 HOH HOH A . K 7 HOH 48 577 577 HOH HOH A . K 7 HOH 49 578 578 HOH HOH A . K 7 HOH 50 579 579 HOH HOH A . K 7 HOH 51 580 580 HOH HOH A . K 7 HOH 52 581 581 HOH HOH A . K 7 HOH 53 582 582 HOH HOH A . K 7 HOH 54 583 583 HOH HOH A . K 7 HOH 55 584 584 HOH HOH A . K 7 HOH 56 589 589 HOH HOH A . K 7 HOH 57 590 590 HOH HOH A . K 7 HOH 58 591 591 HOH HOH A . K 7 HOH 59 592 592 HOH HOH A . K 7 HOH 60 593 593 HOH HOH A . K 7 HOH 61 596 596 HOH HOH A . K 7 HOH 62 597 597 HOH HOH A . K 7 HOH 63 600 600 HOH HOH A . K 7 HOH 64 601 601 HOH HOH A . K 7 HOH 65 602 602 HOH HOH A . K 7 HOH 66 603 603 HOH HOH A . K 7 HOH 67 604 604 HOH HOH A . K 7 HOH 68 606 606 HOH HOH A . K 7 HOH 69 607 607 HOH HOH A . K 7 HOH 70 608 608 HOH HOH A . K 7 HOH 71 610 610 HOH HOH A . K 7 HOH 72 611 611 HOH HOH A . K 7 HOH 73 612 612 HOH HOH A . K 7 HOH 74 616 616 HOH HOH A . K 7 HOH 75 617 617 HOH HOH A . K 7 HOH 76 618 618 HOH HOH A . K 7 HOH 77 620 620 HOH HOH A . K 7 HOH 78 621 621 HOH HOH A . K 7 HOH 79 622 622 HOH HOH A . K 7 HOH 80 623 623 HOH HOH A . K 7 HOH 81 624 624 HOH HOH A . K 7 HOH 82 625 625 HOH HOH A . K 7 HOH 83 626 626 HOH HOH A . K 7 HOH 84 627 627 HOH HOH A . K 7 HOH 85 628 628 HOH HOH A . K 7 HOH 86 629 629 HOH HOH A . K 7 HOH 87 631 631 HOH HOH A . K 7 HOH 88 636 636 HOH HOH A . K 7 HOH 89 637 637 HOH HOH A . K 7 HOH 90 638 638 HOH HOH A . K 7 HOH 91 639 639 HOH HOH A . K 7 HOH 92 640 640 HOH HOH A . K 7 HOH 93 641 641 HOH HOH A . K 7 HOH 94 642 642 HOH HOH A . K 7 HOH 95 643 643 HOH HOH A . K 7 HOH 96 644 644 HOH HOH A . K 7 HOH 97 645 645 HOH HOH A . K 7 HOH 98 646 646 HOH HOH A . K 7 HOH 99 647 647 HOH HOH A . K 7 HOH 100 649 649 HOH HOH A . K 7 HOH 101 650 650 HOH HOH A . K 7 HOH 102 653 653 HOH HOH A . K 7 HOH 103 654 654 HOH HOH A . K 7 HOH 104 656 656 HOH HOH A . K 7 HOH 105 657 657 HOH HOH A . K 7 HOH 106 658 658 HOH HOH A . K 7 HOH 107 659 659 HOH HOH A . K 7 HOH 108 660 660 HOH HOH A . K 7 HOH 109 661 661 HOH HOH A . K 7 HOH 110 662 662 HOH HOH A . K 7 HOH 111 663 663 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? B DT 6 ? P DT 6 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? C THR 101 ? A THR 101 ? 1_555 151.5 ? 2 OP1 ? B DT 6 ? P DT 6 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? C VAL 103 ? A VAL 103 ? 1_555 91.7 ? 3 O ? C THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? C VAL 103 ? A VAL 103 ? 1_555 114.8 ? 4 OP1 ? B DT 6 ? P DT 6 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? C ILE 106 ? A ILE 106 ? 1_555 74.1 ? 5 O ? C THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? C ILE 106 ? A ILE 106 ? 1_555 92.7 ? 6 O ? C VAL 103 ? A VAL 103 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? C ILE 106 ? A ILE 106 ? 1_555 94.5 ? 7 OP1 ? B DT 6 ? P DT 6 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? K HOH . ? A HOH 601 ? 1_555 88.7 ? 8 O ? C THR 101 ? A THR 101 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? K HOH . ? A HOH 601 ? 1_555 89.8 ? 9 O ? C VAL 103 ? A VAL 103 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? K HOH . ? A HOH 601 ? 1_555 113.5 ? 10 O ? C ILE 106 ? A ILE 106 ? 1_555 NA ? F NA . ? A NA 341 ? 1_555 O ? K HOH . ? A HOH 601 ? 1_555 147.7 ? 11 O ? C LYS 60 ? A LYS 60 ? 1_555 NA ? G NA . ? A NA 342 ? 1_555 O ? C LEU 62 ? A LEU 62 ? 1_555 74.8 ? 12 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O1A ? H AZT . ? A AZT 338 ? 1_555 88.2 ? 13 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O2B ? H AZT . ? A AZT 338 ? 1_555 169.8 ? 14 O1A ? H AZT . ? A AZT 338 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O2B ? H AZT . ? A AZT 338 ? 1_555 94.3 ? 15 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O1G ? H AZT . ? A AZT 338 ? 1_555 87.9 ? 16 O1A ? H AZT . ? A AZT 338 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O1G ? H AZT . ? A AZT 338 ? 1_555 101.9 ? 17 O2B ? H AZT . ? A AZT 338 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O1G ? H AZT . ? A AZT 338 ? 1_555 82.0 ? 18 OD1 ? C ASP 190 ? A ASP 190 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O ? K HOH . ? A HOH 653 ? 1_555 102.1 ? 19 O1A ? H AZT . ? A AZT 338 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O ? K HOH . ? A HOH 653 ? 1_555 165.5 ? 20 O2B ? H AZT . ? A AZT 338 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O ? K HOH . ? A HOH 653 ? 1_555 73.8 ? 21 O1G ? H AZT . ? A AZT 338 ? 1_555 MN ? D MN . ? A MN 339 ? 1_555 O ? K HOH . ? A HOH 653 ? 1_555 68.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-11-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_initial_refinement_model 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal TNT refinement 5-D ? 1 SDMS 'data reduction' . ? 2 SDMS 'data scaling' . ? 3 TNT phasing 'V. 5-D' ? 4 # _pdbx_entry_details.entry_id 8ICO _pdbx_entry_details.compound_details ;A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: 5'-CATTAGAAAGGGAAGCGCCG-3' (20-MER), 5'-CGGCGC-3' (6-MER), AND 5'-PO4-TCTAATG-3' (7-MER), RESPECTIVELY, WHERE "5'-PO4" INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO THAT WHAT WAS ORIGINALLY INTENDED TO BE THE 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE SEQRES SECTION BELOW. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" T DC 1 ? ? "C3'" T DC 1 ? ? 1.548 1.435 0.113 0.013 N 2 1 "O3'" T DT 3 ? ? "C3'" T DT 3 ? ? 1.346 1.419 -0.073 0.006 N 3 1 C5 T DA 5 ? ? C6 T DA 5 ? ? 1.346 1.406 -0.060 0.009 N 4 1 "O3'" T DG 6 ? ? "C3'" T DG 6 ? ? 1.343 1.419 -0.076 0.006 N 5 1 "C5'" P DC 2 ? ? "C4'" P DC 2 ? ? 1.554 1.512 0.042 0.007 N 6 1 "C2'" P DT 3 ? ? "C1'" P DT 3 ? ? 1.438 1.518 -0.080 0.010 N 7 1 "O4'" P DT 3 ? ? "C1'" P DT 3 ? ? 1.507 1.420 0.087 0.011 N 8 1 "O3'" P DT 3 ? ? "C3'" P DT 3 ? ? 1.376 1.419 -0.043 0.006 N 9 1 "C1'" P DT 3 ? ? N1 P DT 3 ? ? 1.569 1.488 0.081 0.013 N 10 1 N1 P DT 3 ? ? C2 P DT 3 ? ? 1.436 1.376 0.060 0.008 N 11 1 "O3'" P DA 5 ? ? "C3'" P DA 5 ? ? 1.379 1.419 -0.040 0.006 N 12 1 N9 P DA 5 ? ? C4 P DA 5 ? ? 1.416 1.374 0.042 0.006 N 13 1 CD A GLU 58 ? ? OE1 A GLU 58 ? ? 1.335 1.252 0.083 0.011 N 14 1 CD A GLU 71 ? ? OE1 A GLU 71 ? ? 1.330 1.252 0.078 0.011 N 15 1 CD A GLU 75 ? ? OE1 A GLU 75 ? ? 1.334 1.252 0.082 0.011 N 16 1 CD A GLU 86 ? ? OE1 A GLU 86 ? ? 1.335 1.252 0.083 0.011 N 17 1 CD A GLU 117 ? ? OE2 A GLU 117 ? ? 1.332 1.252 0.080 0.011 N 18 1 CD A GLU 123 ? ? OE1 A GLU 123 ? ? 1.325 1.252 0.073 0.011 N 19 1 CD A GLU 129 ? ? OE1 A GLU 129 ? ? 1.323 1.252 0.071 0.011 N 20 1 CD A GLU 147 ? ? OE2 A GLU 147 ? ? 1.334 1.252 0.082 0.011 N 21 1 CD A GLU 153 ? ? OE2 A GLU 153 ? ? 1.324 1.252 0.072 0.011 N 22 1 CD A GLU 154 ? ? OE2 A GLU 154 ? ? 1.321 1.252 0.069 0.011 N 23 1 CD A GLU 172 ? ? OE2 A GLU 172 ? ? 1.330 1.252 0.078 0.011 N 24 1 CD A GLU 203 ? ? OE1 A GLU 203 ? ? 1.322 1.252 0.070 0.011 N 25 1 CD A GLU 216 ? ? OE2 A GLU 216 ? ? 1.322 1.252 0.070 0.011 N 26 1 CD A GLU 249 ? ? OE2 A GLU 249 ? ? 1.329 1.252 0.077 0.011 N 27 1 CD A GLU 288 ? ? OE2 A GLU 288 ? ? 1.325 1.252 0.073 0.011 N 28 1 CD A GLU 295 ? ? OE2 A GLU 295 ? ? 1.324 1.252 0.072 0.011 N 29 1 CD A GLU 309 ? ? OE2 A GLU 309 ? ? 1.320 1.252 0.068 0.011 N 30 1 CD A GLU 316 ? ? OE1 A GLU 316 ? ? 1.319 1.252 0.067 0.011 N 31 1 CD A GLU 329 ? ? OE2 A GLU 329 ? ? 1.332 1.252 0.080 0.011 N 32 1 CD A GLU 335 ? ? OE2 A GLU 335 ? ? 1.330 1.252 0.078 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" T DC 1 ? ? "C1'" T DC 1 ? ? "C2'" T DC 1 ? ? 109.87 106.80 3.07 0.50 N 2 1 "O4'" T DC 1 ? ? "C1'" T DC 1 ? ? N1 T DC 1 ? ? 111.46 108.30 3.16 0.30 N 3 1 "C3'" T DC 1 ? ? "O3'" T DC 1 ? ? P T DA 2 ? ? 132.12 119.70 12.42 1.20 Y 4 1 "O4'" T DA 2 ? ? "C1'" T DA 2 ? ? N9 T DA 2 ? ? 111.48 108.30 3.18 0.30 N 5 1 P T DT 3 ? ? "O5'" T DT 3 ? ? "C5'" T DT 3 ? ? 131.57 120.90 10.67 1.60 N 6 1 "O4'" T DT 3 ? ? "C1'" T DT 3 ? ? N1 T DT 3 ? ? 110.96 108.30 2.66 0.30 N 7 1 "C1'" T DT 4 ? ? "O4'" T DT 4 ? ? "C4'" T DT 4 ? ? 101.66 110.10 -8.44 1.00 N 8 1 "O4'" T DT 4 ? ? "C1'" T DT 4 ? ? N1 T DT 4 ? ? 112.74 108.30 4.44 0.30 N 9 1 C6 T DT 4 ? ? N1 T DT 4 ? ? "C1'" T DT 4 ? ? 97.31 120.40 -23.09 1.50 N 10 1 C2 T DT 4 ? ? N1 T DT 4 ? ? "C1'" T DT 4 ? ? 138.59 118.20 20.39 1.60 N 11 1 C6 T DA 5 ? ? C5 T DA 5 ? ? N7 T DA 5 ? ? 126.92 132.30 -5.38 0.70 N 12 1 N1 T DA 5 ? ? C6 T DA 5 ? ? N6 T DA 5 ? ? 125.09 118.60 6.49 0.60 N 13 1 C5 T DA 5 ? ? C6 T DA 5 ? ? N6 T DA 5 ? ? 117.50 123.70 -6.20 0.80 N 14 1 "O4'" T DG 6 ? ? "C1'" T DG 6 ? ? N9 T DG 6 ? ? 115.05 108.30 6.75 0.30 N 15 1 "O4'" T DA 7 ? ? "C1'" T DA 7 ? ? "C2'" T DA 7 ? ? 109.91 106.80 3.11 0.50 N 16 1 "O4'" T DA 7 ? ? "C1'" T DA 7 ? ? N9 T DA 7 ? ? 111.22 108.30 2.92 0.30 N 17 1 C8 T DA 7 ? ? N9 T DA 7 ? ? "C1'" T DA 7 ? ? 155.87 127.70 28.17 1.80 N 18 1 C4 T DA 7 ? ? N9 T DA 7 ? ? "C1'" T DA 7 ? ? 96.41 126.30 -29.89 1.80 N 19 1 "O4'" P DT 1 ? ? "C1'" P DT 1 ? ? N1 P DT 1 ? ? 113.38 108.30 5.08 0.30 N 20 1 C6 P DT 1 ? ? N1 P DT 1 ? ? "C1'" P DT 1 ? ? 94.69 120.40 -25.71 1.50 N 21 1 C2 P DT 1 ? ? N1 P DT 1 ? ? "C1'" P DT 1 ? ? 145.45 118.20 27.25 1.60 N 22 1 "C4'" P DC 2 ? ? "C3'" P DC 2 ? ? "C2'" P DC 2 ? ? 97.41 102.20 -4.79 0.70 N 23 1 "O4'" P DC 2 ? ? "C1'" P DC 2 ? ? N1 P DC 2 ? ? 113.32 108.30 5.02 0.30 N 24 1 C6 P DC 2 ? ? N1 P DC 2 ? ? "C1'" P DC 2 ? ? 111.83 120.80 -8.97 1.20 N 25 1 C2 P DC 2 ? ? N1 P DC 2 ? ? "C1'" P DC 2 ? ? 129.03 118.80 10.23 1.10 N 26 1 "O5'" P DT 3 ? ? "C5'" P DT 3 ? ? "C4'" P DT 3 ? ? 104.24 109.40 -5.16 0.80 N 27 1 "O4'" P DT 3 ? ? "C4'" P DT 3 ? ? "C3'" P DT 3 ? ? 109.93 106.00 3.93 0.60 N 28 1 N1 P DT 3 ? ? "C1'" P DT 3 ? ? "C2'" P DT 3 ? ? 130.98 114.30 16.68 1.40 N 29 1 "O4'" P DT 3 ? ? "C1'" P DT 3 ? ? N1 P DT 3 ? ? 114.83 108.30 6.53 0.30 N 30 1 N3 P DT 3 ? ? C2 P DT 3 ? ? O2 P DT 3 ? ? 116.49 122.30 -5.81 0.60 N 31 1 C6 P DT 3 ? ? N1 P DT 3 ? ? "C1'" P DT 3 ? ? 92.77 120.40 -27.63 1.50 N 32 1 C2 P DT 3 ? ? N1 P DT 3 ? ? "C1'" P DT 3 ? ? 146.70 118.20 28.50 1.60 N 33 1 "O4'" P DA 4 ? ? "C1'" P DA 4 ? ? N9 P DA 4 ? ? 110.34 108.30 2.04 0.30 N 34 1 C8 P DA 4 ? ? N9 P DA 4 ? ? "C1'" P DA 4 ? ? 111.09 127.70 -16.61 1.80 N 35 1 C4 P DA 4 ? ? N9 P DA 4 ? ? "C1'" P DA 4 ? ? 142.42 126.30 16.12 1.80 N 36 1 C8 P DA 5 ? ? N9 P DA 5 ? ? "C1'" P DA 5 ? ? 111.78 127.70 -15.92 1.80 N 37 1 C4 P DA 5 ? ? N9 P DA 5 ? ? "C1'" P DA 5 ? ? 141.65 126.30 15.35 1.80 N 38 1 "O4'" P DT 6 ? ? "C1'" P DT 6 ? ? N1 P DT 6 ? ? 102.62 108.00 -5.38 0.70 N 39 1 C6 P DT 6 ? ? N1 P DT 6 ? ? "C1'" P DT 6 ? ? 102.02 120.40 -18.38 1.50 N 40 1 C2 P DT 6 ? ? N1 P DT 6 ? ? "C1'" P DT 6 ? ? 135.57 118.20 17.37 1.60 N 41 1 C8 P DG 7 ? ? N9 P DG 7 ? ? "C1'" P DG 7 ? ? 136.72 127.00 9.72 1.30 N 42 1 C4 P DG 7 ? ? N9 P DG 7 ? ? "C1'" P DG 7 ? ? 116.01 126.50 -10.49 1.30 N 43 1 CA A HIS 34 ? ? CB A HIS 34 ? ? CG A HIS 34 ? ? 103.10 113.60 -10.50 1.70 N 44 1 CB A TYR 39 ? ? CG A TYR 39 ? ? CD1 A TYR 39 ? ? 117.19 121.00 -3.81 0.60 N 45 1 CA A TYR 49 ? ? CB A TYR 49 ? ? CG A TYR 49 ? ? 124.89 113.40 11.49 1.90 N 46 1 C A TYR 49 ? ? N A PRO 50 ? ? CA A PRO 50 ? ? 137.75 119.30 18.45 1.50 Y 47 1 C A TYR 49 ? ? N A PRO 50 ? ? CD A PRO 50 ? ? 105.96 128.40 -22.44 2.10 Y 48 1 CB A ASP 74 ? ? CG A ASP 74 ? ? OD1 A ASP 74 ? ? 124.98 118.30 6.68 0.90 N 49 1 CA A THR 79 ? ? CB A THR 79 ? ? CG2 A THR 79 ? ? 103.87 112.40 -8.53 1.40 N 50 1 N A ARG 83 ? ? CA A ARG 83 ? ? CB A ARG 83 ? ? 124.81 110.60 14.21 1.80 N 51 1 NE A ARG 89 ? ? CZ A ARG 89 ? ? NH1 A ARG 89 ? ? 124.01 120.30 3.71 0.50 N 52 1 CB A ASP 92 ? ? CG A ASP 92 ? ? OD1 A ASP 92 ? ? 124.17 118.30 5.87 0.90 N 53 1 CB A ASP 92 ? ? CG A ASP 92 ? ? OD2 A ASP 92 ? ? 111.71 118.30 -6.59 0.90 N 54 1 CB A ASP 116 ? ? CG A ASP 116 ? ? OD1 A ASP 116 ? ? 123.84 118.30 5.54 0.90 N 55 1 CB A ASP 124 ? ? CG A ASP 124 ? ? OD2 A ASP 124 ? ? 111.33 118.30 -6.97 0.90 N 56 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD1 A ASP 130 ? ? 125.55 118.30 7.25 0.90 N 57 1 CB A ASP 130 ? ? CG A ASP 130 ? ? OD2 A ASP 130 ? ? 110.14 118.30 -8.16 0.90 N 58 1 N A LYS 168 ? ? CA A LYS 168 ? ? CB A LYS 168 ? ? 121.75 110.60 11.15 1.80 N 59 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD1 A ASP 190 ? ? 125.27 118.30 6.97 0.90 N 60 1 CB A ASP 190 ? ? CG A ASP 190 ? ? OD2 A ASP 190 ? ? 110.61 118.30 -7.69 0.90 N 61 1 CB A ASP 192 ? ? CA A ASP 192 ? ? C A ASP 192 ? ? 97.91 110.40 -12.49 2.00 N 62 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD1 A ASP 192 ? ? 111.60 118.30 -6.70 0.90 N 63 1 C A GLN 207 ? ? N A PRO 208 ? ? CD A PRO 208 ? ? 109.41 128.40 -18.99 2.10 Y 64 1 NE A ARG 253 ? ? CZ A ARG 253 ? ? NH1 A ARG 253 ? ? 124.96 120.30 4.66 0.50 N 65 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD1 A ASP 256 ? ? 124.01 118.30 5.71 0.90 N 66 1 CB A ASP 256 ? ? CG A ASP 256 ? ? OD2 A ASP 256 ? ? 111.57 118.30 -6.73 0.90 N 67 1 CB A ASP 263 ? ? CG A ASP 263 ? ? OD2 A ASP 263 ? ? 110.99 118.30 -7.31 0.90 N 68 1 CA A TYR 266 ? ? CB A TYR 266 ? ? CG A TYR 266 ? ? 99.43 113.40 -13.97 1.90 N 69 1 CB A TYR 271 ? ? CG A TYR 271 ? ? CD1 A TYR 271 ? ? 117.22 121.00 -3.78 0.60 N 70 1 C A GLU 309 ? ? N A PRO 310 ? ? CA A PRO 310 ? ? 131.20 119.30 11.90 1.50 Y 71 1 C A LEU 311 ? ? N A PRO 312 ? ? CD A PRO 312 ? ? 106.21 128.40 -22.19 2.10 Y 72 1 CB A ASP 314 ? ? CG A ASP 314 ? ? OD1 A ASP 314 ? ? 110.90 118.30 -7.40 0.90 N 73 1 CD A LYS 326 ? ? CE A LYS 326 ? ? NZ A LYS 326 ? ? 127.45 111.70 15.75 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 10 ? ? -170.22 -18.61 2 1 ALA A 32 ? ? -107.70 62.87 3 1 PRO A 50 ? ? -65.67 3.95 4 1 LYS A 60 ? ? -38.95 -36.49 5 1 ALA A 78 ? ? -64.14 -78.85 6 1 ASP A 91 ? ? -31.84 114.26 7 1 THR A 101 ? ? -57.23 -9.66 8 1 CYS A 178 ? ? -90.25 -146.95 9 1 ARG A 183 ? ? -78.75 23.04 10 1 ALA A 185 ? ? -9.08 133.85 11 1 SER A 202 ? ? -21.75 -51.63 12 1 GLU A 203 ? ? -85.98 -76.35 13 1 SER A 204 ? ? -23.08 85.58 14 1 THR A 205 ? ? -37.85 85.18 15 1 LYS A 206 ? ? 41.50 -173.94 16 1 GLN A 207 ? ? 175.66 61.11 17 1 PRO A 208 ? ? -38.53 -34.01 18 1 HIS A 222 ? ? 78.22 40.70 19 1 THR A 233 ? ? -151.98 -12.88 20 1 LYS A 244 ? ? -25.06 -128.92 21 1 ASN A 245 ? ? -105.49 62.30 22 1 ASP A 246 ? ? 37.69 166.74 23 1 GLU A 247 ? ? 102.42 -23.94 24 1 TYR A 265 ? ? -54.70 -77.35 25 1 LYS A 289 ? ? -57.46 26.48 26 1 THR A 304 ? ? -55.02 0.35 27 1 ALA A 307 ? ? 175.21 152.86 28 1 GLU A 309 ? ? 96.54 67.41 29 1 PRO A 310 ? ? -34.12 93.09 30 1 ILE A 323 ? ? -69.91 1.47 31 1 ARG A 333 ? ? -74.51 28.58 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? A ARG 40 ? PLANAR . 2 1 CA ? A ASP 246 ? PLANAR . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 T DA 8 ? "C5'" ? A DA 8 "C5'" 2 1 Y 1 T DA 8 ? "C4'" ? A DA 8 "C4'" 3 1 Y 1 T DA 8 ? "O4'" ? A DA 8 "O4'" 4 1 Y 1 T DA 8 ? "C3'" ? A DA 8 "C3'" 5 1 Y 1 T DA 8 ? "O3'" ? A DA 8 "O3'" 6 1 Y 1 T DA 8 ? "C2'" ? A DA 8 "C2'" 7 1 Y 1 T DA 8 ? "C1'" ? A DA 8 "C1'" 8 1 Y 1 T DA 8 ? N9 ? A DA 8 N9 9 1 Y 1 T DA 8 ? C8 ? A DA 8 C8 10 1 Y 1 T DA 8 ? N7 ? A DA 8 N7 11 1 Y 1 T DA 8 ? C5 ? A DA 8 C5 12 1 Y 1 T DA 8 ? C6 ? A DA 8 C6 13 1 Y 1 T DA 8 ? N6 ? A DA 8 N6 14 1 Y 1 T DA 8 ? N1 ? A DA 8 N1 15 1 Y 1 T DA 8 ? C2 ? A DA 8 C2 16 1 Y 1 T DA 8 ? N3 ? A DA 8 N3 17 1 Y 1 T DA 8 ? C4 ? A DA 8 C4 18 1 N 1 A AZT 338 ? "N5'" ? H AZT 1 "N5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? C MET 1 2 1 Y 1 A SER 2 ? C SER 2 3 1 Y 1 A LYS 3 ? C LYS 3 4 1 Y 1 A ARG 4 ? C ARG 4 5 1 Y 1 A LYS 5 ? C LYS 5 6 1 Y 1 A ALA 6 ? C ALA 6 7 1 Y 1 A PRO 7 ? C PRO 7 8 1 Y 1 A GLN 8 ? C GLN 8 9 1 Y 0 A GLU 9 ? C GLU 9 10 1 Y 0 A ASP 246 ? C ASP 246 11 1 Y 0 A GLU 247 ? C GLU 247 # _ndb_struct_conf_na.entry_id 8ICO _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 7 1_555 0.524 -0.070 -1.398 3.030 -2.064 13.951 1 T_DC1:DG7_P T 1 ? P 7 ? ? 1 1 A DA 2 1_555 B DT 6 1_555 0.185 -0.018 0.013 0.406 -12.477 9.684 2 T_DA2:DT6_P T 2 ? P 6 ? 20 1 1 A DT 3 1_555 B DA 5 1_555 -0.736 -0.195 0.383 0.585 -15.286 -0.322 3 T_DT3:DA5_P T 3 ? P 5 ? 20 1 1 A DT 4 1_555 B DA 4 1_555 -0.718 -0.647 0.376 4.947 -18.576 6.233 4 T_DT4:DA4_P T 4 ? P 4 ? 20 1 1 A DA 5 1_555 B DT 3 1_555 0.050 -0.506 -0.028 -0.775 -10.096 2.182 5 T_DA5:DT3_P T 5 ? P 3 ? 20 1 1 A DG 6 1_555 B DC 2 1_555 -0.374 -0.535 0.172 -5.527 -9.590 -0.600 6 T_DG6:DC2_P T 6 ? P 2 ? 19 1 1 A DA 7 1_555 B DT 1 1_555 -0.582 -0.380 0.327 16.335 -4.540 -2.995 7 T_DA7:DT1_P T 7 ? P 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 7 1_555 A DA 2 1_555 B DT 6 1_555 -0.483 0.762 3.664 -6.259 10.026 23.059 -1.609 -0.989 3.677 23.225 14.499 25.875 1 TT_DC1DA2:DT6DG7_PP T 1 ? P 7 ? T 2 ? P 6 ? 1 A DA 2 1_555 B DT 6 1_555 A DT 3 1_555 B DA 5 1_555 -0.179 -0.164 3.297 -0.978 7.466 30.444 -1.716 0.147 3.172 13.952 1.828 31.340 2 TT_DA2DT3:DA5DT6_PP T 2 ? P 6 ? T 3 ? P 5 ? 1 A DT 3 1_555 B DA 5 1_555 A DT 4 1_555 B DA 4 1_555 0.015 -0.618 3.231 -2.038 10.400 33.910 -2.480 -0.312 2.916 17.313 3.392 35.481 3 TT_DT3DT4:DA4DA5_PP T 3 ? P 5 ? T 4 ? P 4 ? 1 A DT 4 1_555 B DA 4 1_555 A DA 5 1_555 B DT 3 1_555 -0.324 0.335 3.616 0.598 5.586 40.521 -0.201 0.537 3.624 8.019 -0.858 40.893 4 TT_DT4DA5:DT3DA4_PP T 4 ? P 4 ? T 5 ? P 3 ? 1 A DA 5 1_555 B DT 3 1_555 A DG 6 1_555 B DC 2 1_555 0.014 -0.327 3.437 -3.146 2.186 28.649 -1.162 -0.759 3.382 4.392 6.321 28.899 5 TT_DA5DG6:DC2DT3_PP T 5 ? P 3 ? T 6 ? P 2 ? 1 A DG 6 1_555 B DC 2 1_555 A DA 7 1_555 B DT 1 1_555 -0.246 0.429 3.055 -1.846 -0.781 26.115 1.144 0.075 3.051 -1.725 4.079 26.190 6 TT_DG6DA7:DT1DC2_PP T 6 ? P 2 ? T 7 ? P 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 'SODIUM ION' NA 6 "3'-AZIDO-3'-DEOXYTHYMIDINE-5'-TRIPHOSPHATE" AZT 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8ICB _pdbx_initial_refinement_model.details ? #