HEADER LYASE 12-FEB-23 8ID7 TITLE CRYSTAL STRUCTURE OF YBIW IN COMPLEX WITH 1,5-ANHYDROGLUCITOL-6- TITLE 2 PHOSPHATE IN ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DEHYDRATASE YBIW; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655; SOURCE 3 ORGANISM_TAXID: 511145; SOURCE 4 GENE: YBIW, B0823, JW0807; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCYL RADICAL ENZYME, YBIW, 1, 5-ANHYDROGLUCITOL-6-PHOSPHATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.L.MA,Y.ZHANG REVDAT 2 09-OCT-24 8ID7 1 JRNL REVDAT 1 02-OCT-24 8ID7 0 JRNL AUTH K.MA,B.XUE,R.CHU,Y.ZHENG,S.SHARMA,L.JIANG,M.HU,Y.XIE,Y.HU, JRNL AUTH 2 T.TAO,Y.ZHOU,D.LIU,Z.LI,Q.YANG,Y.CHEN,S.WU,Y.TONG, JRNL AUTH 3 R.C.ROBINSON,W.S.YEW,X.JIN,Y.LIU,H.ZHAO,E.L.ANG,Y.WEI, JRNL AUTH 4 Y.ZHANG JRNL TITL A WIDESPREAD RADICAL-MEDIATED GLYCOLYSIS PATHWAY. JRNL REF J.AM.CHEM.SOC. V. 146 26187 2024 JRNL REFN ESSN 1520-5126 JRNL PMID 39283600 JRNL DOI 10.1021/JACS.4C07718 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 35659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.460 REMARK 3 FREE R VALUE TEST SET COUNT : 1947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4820 - 6.3819 1.00 2596 152 0.1651 0.2098 REMARK 3 2 6.3819 - 5.0675 1.00 2496 145 0.1897 0.2231 REMARK 3 3 5.0675 - 4.4275 1.00 2484 141 0.1700 0.2354 REMARK 3 4 4.4275 - 4.0229 1.00 2487 147 0.1890 0.2369 REMARK 3 5 4.0229 - 3.7347 0.99 2441 138 0.2132 0.3000 REMARK 3 6 3.7347 - 3.5146 0.99 2439 138 0.2335 0.2899 REMARK 3 7 3.5146 - 3.3386 0.99 2448 145 0.2559 0.3096 REMARK 3 8 3.3386 - 3.1933 0.98 2407 136 0.2794 0.3738 REMARK 3 9 3.1933 - 3.0704 0.98 2394 138 0.2953 0.3885 REMARK 3 10 3.0704 - 2.9645 0.96 2362 136 0.2958 0.3402 REMARK 3 11 2.9645 - 2.8718 0.96 2346 144 0.3163 0.4263 REMARK 3 12 2.8718 - 2.7897 0.94 2284 136 0.3365 0.4063 REMARK 3 13 2.7897 - 2.7163 0.94 2270 126 0.3490 0.4632 REMARK 3 14 2.7163 - 2.6500 0.92 2258 125 0.3544 0.4232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6411 REMARK 3 ANGLE : 1.008 8707 REMARK 3 CHIRALITY : 0.051 972 REMARK 3 PLANARITY : 0.007 1140 REMARK 3 DIHEDRAL : 3.667 3826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8ID7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 16-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 57.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.19300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.58900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1M TRIS, PH REMARK 280 8.0, 25% (W/V) PEG3350, 10 MM 1,5-ANHYDROGLUCITOL-6-PHOSPHATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 103.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 104.02500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 103.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.02500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 103.58500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.02500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 103.58500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.02500 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.02500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 104.02500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.02500 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 104.02500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 103.58500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 103.58500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 103.58500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 58.24000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 103.58500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -58.24000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -104.02500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 3 OG1 CG2 REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 ARG A 82 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 234 CG CD OE1 OE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 GLN A 358 CG CD OE1 NE2 REMARK 470 GLN A 606 CG CD OE1 NE2 REMARK 470 GLU A 735 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 777 O HOH A 1001 1.85 REMARK 500 O HOH A 1001 O HOH A 1093 1.94 REMARK 500 OG1 THR A 91 OE1 GLN A 133 2.01 REMARK 500 OD1 ASP A 134 O HOH A 1002 2.01 REMARK 500 O LYS A 711 O HOH A 1003 2.02 REMARK 500 N THR A 3 O HOH A 1004 2.04 REMARK 500 N VAL A 81 O HOH A 1005 2.05 REMARK 500 NH2 ARG A 222 O HOH A 1006 2.05 REMARK 500 OD2 ASP A 300 O HOH A 1007 2.06 REMARK 500 O PRO A 484 O HOH A 1008 2.06 REMARK 500 NZ LYS A 97 O HOH A 1009 2.06 REMARK 500 N VAL A 92 O HOH A 1010 2.07 REMARK 500 O HIS A 752 O HOH A 1011 2.07 REMARK 500 OG1 THR A 455 OG SER A 560 2.07 REMARK 500 N GLU A 143 O HOH A 1012 2.11 REMARK 500 N ALA A 476 O HOH A 1013 2.11 REMARK 500 NE2 HIS A 684 O HOH A 1014 2.12 REMARK 500 O PHE A 599 O HOH A 1015 2.13 REMARK 500 O MET A 315 OG SER A 318 2.15 REMARK 500 O HOH A 1102 O HOH A 1155 2.15 REMARK 500 NZ LYS A 726 O HOH A 1016 2.17 REMARK 500 O GLY A 138 O HOH A 1017 2.18 REMARK 500 OH TYR A 368 O HOH A 1018 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 8 111.85 177.55 REMARK 500 LEU A 9 -134.77 -93.76 REMARK 500 HIS A 58 -70.15 -58.16 REMARK 500 HIS A 69 10.21 58.65 REMARK 500 ARG A 82 26.65 44.91 REMARK 500 PRO A 85 174.36 -58.63 REMARK 500 PRO A 106 79.40 -51.47 REMARK 500 ALA A 108 61.58 -152.11 REMARK 500 CYS A 124 -56.15 -26.86 REMARK 500 PHE A 140 133.78 -38.82 REMARK 500 ALA A 155 35.44 -155.79 REMARK 500 ASP A 163 -63.46 -95.29 REMARK 500 ALA A 164 -131.75 58.62 REMARK 500 LEU A 172 -72.27 -53.58 REMARK 500 ALA A 232 -74.94 -54.00 REMARK 500 HIS A 255 -55.00 -145.00 REMARK 500 THR A 260 -168.26 -101.89 REMARK 500 LEU A 303 -84.12 -98.97 REMARK 500 SER A 331 -176.46 -57.45 REMARK 500 SER A 341 81.39 10.84 REMARK 500 GLN A 352 -158.34 -101.50 REMARK 500 ASN A 353 100.21 -176.52 REMARK 500 ARG A 405 6.09 -66.77 REMARK 500 CYS A 441 -90.41 -113.82 REMARK 500 MET A 457 -145.04 -71.77 REMARK 500 GLU A 471 69.18 -118.21 REMARK 500 PHE A 581 -85.12 -86.32 REMARK 500 GLU A 582 -59.60 -24.48 REMARK 500 ALA A 596 0.87 -66.96 REMARK 500 PHE A 599 65.56 29.84 REMARK 500 LEU A 602 -33.95 -133.75 REMARK 500 ILE A 664 -152.07 40.33 REMARK 500 VAL A 668 -75.97 -57.92 REMARK 500 HIS A 684 -24.30 82.78 REMARK 500 LEU A 687 -168.84 -78.42 REMARK 500 ILE A 717 46.00 -108.09 REMARK 500 LEU A 718 7.74 -67.90 REMARK 500 LEU A 732 78.77 -119.46 REMARK 500 GLU A 733 -50.88 -134.28 REMARK 500 LYS A 753 49.87 71.12 REMARK 500 HIS A 773 73.57 -102.79 REMARK 500 VAL A 784 -68.32 -90.67 REMARK 500 ALA A 785 91.56 176.78 REMARK 500 SER A 795 -176.59 -59.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 8ID7 A 1 810 UNP P75793 GRE2_ECOLI 1 810 SEQADV 8ID7 ALA A 114 UNP P75793 GLU 114 ENGINEERED MUTATION SEQADV 8ID7 ALA A 115 UNP P75793 GLU 115 ENGINEERED MUTATION SEQADV 8ID7 ALA A 117 UNP P75793 LYS 117 ENGINEERED MUTATION SEQRES 1 A 810 MET THR THR LEU LYS LEU ASP THR LEU SER ASP ARG ILE SEQRES 2 A 810 LYS ALA HIS LYS ASN ALA LEU VAL HIS ILE VAL LYS PRO SEQRES 3 A 810 PRO VAL CYS THR GLU ARG ALA GLN HIS TYR THR GLU MET SEQRES 4 A 810 TYR GLN GLN HIS LEU ASP LYS PRO ILE PRO VAL ARG ARG SEQRES 5 A 810 ALA LEU ALA LEU ALA HIS HIS LEU ALA ASN ARG THR ILE SEQRES 6 A 810 TRP ILE LYS HIS ASP GLU LEU ILE ILE GLY ASN GLN ALA SEQRES 7 A 810 SER GLU VAL ARG ALA ALA PRO ILE PHE PRO GLU TYR THR SEQRES 8 A 810 VAL SER TRP ILE GLU LYS GLU ILE ASP ASP LEU ALA ASP SEQRES 9 A 810 ARG PRO GLY ALA GLY PHE ALA VAL SER ALA ALA ASN ALA SEQRES 10 A 810 ARG VAL LEU HIS GLU VAL CYS PRO TRP TRP ARG GLY GLN SEQRES 11 A 810 THR VAL GLN ASP ARG CYS TYR GLY MET PHE THR ASP GLU SEQRES 12 A 810 GLN LYS GLY LEU LEU ALA THR GLY ILE ILE LYS ALA GLU SEQRES 13 A 810 GLY ASN MET THR SER GLY ASP ALA HIS LEU ALA VAL ASN SEQRES 14 A 810 PHE PRO LEU LEU LEU GLU LYS GLY LEU ASP GLY LEU ARG SEQRES 15 A 810 GLU GLU VAL ALA GLU ARG ARG SER ARG ILE ASN LEU THR SEQRES 16 A 810 VAL LEU GLU ASP LEU HIS GLY GLU GLN PHE LEU LYS ALA SEQRES 17 A 810 ILE ASP ILE VAL LEU VAL ALA VAL SER GLU HIS ILE GLU SEQRES 18 A 810 ARG PHE ALA ALA LEU ALA ARG GLU MET ALA ALA THR GLU SEQRES 19 A 810 THR ARG GLU SER ARG ARG ASP GLU LEU LEU ALA MET ALA SEQRES 20 A 810 GLU ASN CYS ASP LEU ILE ALA HIS GLN PRO PRO GLN THR SEQRES 21 A 810 PHE TRP GLN ALA LEU GLN LEU CYS TYR PHE ILE GLN LEU SEQRES 22 A 810 ILE LEU GLN ILE GLU SER ASN GLY HIS SER VAL SER PHE SEQRES 23 A 810 GLY ARG MET ASP GLN TYR LEU TYR PRO TYR TYR ARG ARG SEQRES 24 A 810 ASP VAL GLU LEU ASN GLN THR LEU ASP ARG GLU HIS ALA SEQRES 25 A 810 ILE GLU MET LEU HIS SER CYS TRP LEU LYS LEU LEU GLU SEQRES 26 A 810 VAL ASN LYS ILE ARG SER GLY SER HIS SER LYS ALA SER SEQRES 27 A 810 ALA GLY SER PRO LEU TYR GLN ASN VAL THR ILE GLY GLY SEQRES 28 A 810 GLN ASN LEU VAL ASP GLY GLN PRO MET ASP ALA VAL ASN SEQRES 29 A 810 PRO LEU SER TYR ALA ILE LEU GLU SER CYS GLY ARG LEU SEQRES 30 A 810 ARG SER THR GLN PRO ASN LEU SER VAL ARG TYR HIS ALA SEQRES 31 A 810 GLY MET SER ASN ASP PHE LEU ASP ALA CYS VAL GLN VAL SEQRES 32 A 810 ILE ARG CYS GLY PHE GLY MET PRO ALA PHE ASN ASN ASP SEQRES 33 A 810 GLU ILE VAL ILE PRO GLU PHE ILE LYS LEU GLY ILE GLU SEQRES 34 A 810 PRO GLN ASP ALA TYR ASP TYR ALA ALA ILE GLY CYS ILE SEQRES 35 A 810 GLU THR ALA VAL GLY GLY LYS TRP GLY TYR ARG CYS THR SEQRES 36 A 810 GLY MET SER PHE ILE ASN PHE ALA ARG VAL MET LEU ALA SEQRES 37 A 810 ALA LEU GLU GLY GLY HIS ASP ALA THR SER GLY LYS VAL SEQRES 38 A 810 PHE LEU PRO GLN GLU LYS ALA LEU SER ALA GLY ASN PHE SEQRES 39 A 810 ASN ASN PHE ASP GLU VAL MET ASP ALA TRP ASP THR GLN SEQRES 40 A 810 ILE ARG TYR TYR THR ARG LYS SER ILE GLU ILE GLU TYR SEQRES 41 A 810 VAL VAL ASP THR MET LEU GLU GLU ASN VAL HIS ASP ILE SEQRES 42 A 810 LEU CYS SER ALA LEU VAL ASP ASP CYS ILE GLU ARG ALA SEQRES 43 A 810 LYS SER ILE LYS GLN GLY GLY ALA LYS TYR ASP TRP VAL SEQRES 44 A 810 SER GLY LEU GLN VAL GLY ILE ALA ASN LEU GLY ASN SER SEQRES 45 A 810 LEU ALA ALA VAL LYS LYS LEU VAL PHE GLU GLN GLY ALA SEQRES 46 A 810 ILE GLY GLN GLN GLN LEU ALA ALA ALA LEU ALA ASP ASP SEQRES 47 A 810 PHE ASP GLY LEU THR HIS GLU GLN LEU ARG GLN ARG LEU SEQRES 48 A 810 ILE ASN GLY ALA PRO LYS TYR GLY ASN ASP ASP ASP THR SEQRES 49 A 810 VAL ASP THR LEU LEU ALA ARG ALA TYR GLN THR TYR ILE SEQRES 50 A 810 ASP GLU LEU LYS GLN TYR HIS ASN PRO ARG TYR GLY ARG SEQRES 51 A 810 GLY PRO VAL GLY GLY ASN TYR TYR ALA GLY THR SER SER SEQRES 52 A 810 ILE SER ALA ASN VAL PRO PHE GLY ALA GLN THR MET ALA SEQRES 53 A 810 THR PRO ASP GLY ARG LYS ALA HIS THR PRO LEU ALA GLU SEQRES 54 A 810 GLY ALA SER PRO ALA SER GLY THR ASP HIS LEU GLY PRO SEQRES 55 A 810 THR ALA VAL ILE GLY SER VAL GLY LYS LEU PRO THR ALA SEQRES 56 A 810 ALA ILE LEU GLY GLY VAL LEU LEU ASN GLN LYS LEU ASN SEQRES 57 A 810 PRO ALA THR LEU GLU ASN GLU SER ASP LYS GLN LYS LEU SEQRES 58 A 810 MET ILE LEU LEU ARG THR PHE PHE GLU VAL HIS LYS GLY SEQRES 59 A 810 TRP HIS ILE GLN TYR ASN ILE VAL SER ARG GLU THR LEU SEQRES 60 A 810 LEU ASP ALA LYS LYS HIS PRO ASP GLN TYR ARG ASP LEU SEQRES 61 A 810 VAL VAL ARG VAL ALA GLY TYR SER ALA PHE PHE THR ALA SEQRES 62 A 810 LEU SER PRO ASP ALA GLN ASP ASP ILE ILE ALA ARG THR SEQRES 63 A 810 GLU HIS MET LEU HET 0WK A 901 26 HETNAM 0WK 1,5-ANHYDRO-6-O-PHOSPHONO-D-GLUCITOL FORMUL 2 0WK C6 H13 O8 P FORMUL 3 HOH *165(H2 O) HELIX 1 AA1 SER A 10 HIS A 22 1 13 HELIX 2 AA2 THR A 30 HIS A 43 1 14 HELIX 3 AA3 PRO A 47 ALA A 61 1 15 HELIX 4 AA4 TRP A 94 ILE A 99 1 6 HELIX 5 AA5 SER A 113 CYS A 124 1 12 HELIX 6 AA6 PRO A 125 TRP A 127 5 3 HELIX 7 AA7 THR A 131 PHE A 140 1 10 HELIX 8 AA8 THR A 141 GLY A 151 1 11 HELIX 9 AA9 ALA A 155 THR A 160 1 6 HELIX 10 AB1 ASN A 169 ARG A 191 1 23 HELIX 11 AB2 VAL A 196 THR A 233 1 38 HELIX 12 AB3 ARG A 236 ALA A 254 1 19 HELIX 13 AB4 THR A 260 SER A 279 1 20 HELIX 14 AB5 ARG A 288 LEU A 293 1 6 HELIX 15 AB6 LEU A 293 GLU A 302 1 10 HELIX 16 AB7 ASP A 308 VAL A 326 1 19 HELIX 17 AB8 SER A 331 ALA A 337 1 7 HELIX 18 AB9 ASN A 364 ARG A 378 1 15 HELIX 19 AC1 SER A 393 ARG A 405 1 13 HELIX 20 AC2 ASP A 416 LEU A 426 1 11 HELIX 21 AC3 GLU A 429 TYR A 434 1 6 HELIX 22 AC4 PHE A 462 GLU A 471 1 10 HELIX 23 AC5 ASN A 496 VAL A 530 1 35 HELIX 24 AC6 ASP A 532 LEU A 538 1 7 HELIX 25 AC7 ASP A 541 ALA A 546 1 6 HELIX 26 AC8 SER A 548 GLY A 552 5 5 HELIX 27 AC9 GLY A 565 VAL A 580 1 16 HELIX 28 AD1 GLY A 587 ALA A 596 1 10 HELIX 29 AD2 LEU A 602 GLY A 614 1 13 HELIX 30 AD3 ASP A 622 LYS A 641 1 20 HELIX 31 AD4 SER A 663 SER A 665 5 3 HELIX 32 AD5 ALA A 666 GLN A 673 1 8 HELIX 33 AD6 GLY A 701 GLY A 710 1 10 HELIX 34 AD7 LYS A 711 LEU A 712 5 2 HELIX 35 AD8 PRO A 713 ILE A 717 5 5 HELIX 36 AD9 ASN A 734 VAL A 751 1 18 HELIX 37 AE1 SER A 763 HIS A 773 1 11 HELIX 38 AE2 PRO A 774 TYR A 777 5 4 HELIX 39 AE3 THR A 792 LEU A 794 5 3 HELIX 40 AE4 SER A 795 ARG A 805 1 11 SHEET 1 AA1 3 ILE A 153 LYS A 154 0 SHEET 2 AA1 3 PHE A 459 ASN A 461 -1 O PHE A 459 N LYS A 154 SHEET 3 AA1 3 LEU A 562 VAL A 564 1 O VAL A 564 N ILE A 460 SHEET 1 AA2 3 ASN A 346 GLY A 350 0 SHEET 2 AA2 3 ASN A 383 TYR A 388 1 O ASN A 383 N VAL A 347 SHEET 3 AA2 3 ALA A 412 ASN A 415 1 O ALA A 412 N VAL A 386 SHEET 1 AA3 2 ALA A 437 ILE A 439 0 SHEET 2 AA3 2 GLU A 443 ALA A 445 -1 O ALA A 445 N ALA A 437 SHEET 1 AA4 2 TYR A 556 SER A 560 0 SHEET 2 AA4 2 VAL A 653 TYR A 658 1 O ASN A 656 N VAL A 559 SHEET 1 AA5 2 ASN A 724 LEU A 727 0 SHEET 2 AA5 2 GLN A 758 ILE A 761 1 O ASN A 760 N LEU A 727 SHEET 1 AA6 2 VAL A 781 ARG A 783 0 SHEET 2 AA6 2 SER A 788 PHE A 790 -1 O ALA A 789 N VAL A 782 CISPEP 1 GLN A 381 PRO A 382 0 2.44 CISPEP 2 MET A 410 PRO A 411 0 1.19 CISPEP 3 ASP A 540 ASP A 541 0 6.76 CRYST1 116.480 207.170 208.050 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004807 0.00000