HEADER VIRAL PROTEIN 13-FEB-23 8IDM TITLE CRYSTAL STRUCTURE OF NANOBODY VHH-227 WITH NANOBODY VHH-T71 AND MERS- TITLE 2 COV RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: VHH-227; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VHH-T71; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_TAXID: 9838; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 8 ORGANISM_TAXID: 9838; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME-RELATED SOURCE 13 CORONAVIRUS; SOURCE 14 ORGANISM_TAXID: 1335626; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS MERS-COV, NANOBODY, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,L.TIAN REVDAT 1 28-FEB-24 8IDM 0 JRNL AUTH F.IDOUDI,R.WANG,L.TIAN,L.ZHANG,X.WANG JRNL TITL STRUCTURAL DEFINITION OF A NOVEL NANOBODY BINDING SITE JRNL TITL 2 SPECIFICALLY TARGETING THE MERS-COV RBD CORE-DOMAIN WITH JRNL TITL 3 NEUTRALIZING CAPACITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 12539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.2200 - 5.6300 1.00 3176 155 0.2199 0.2512 REMARK 3 2 5.6300 - 4.5000 1.00 2978 158 0.2553 0.2519 REMARK 3 3 4.5000 - 3.9400 0.99 2922 144 0.3000 0.3097 REMARK 3 4 3.9400 - 3.5900 0.98 2870 136 0.3669 0.4109 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3715 REMARK 3 ANGLE : 0.819 5057 REMARK 3 CHIRALITY : 0.051 581 REMARK 3 PLANARITY : 0.005 641 REMARK 3 DIHEDRAL : 11.680 545 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12591 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.590 REMARK 200 RESOLUTION RANGE LOW (A) : 16.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M HEPES, PH 7.5, 30% V/V PEGMME 550, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.07433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 212.14867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.07433 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 212.14867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.07433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 212.14867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 106.07433 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 212.14867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 GLN A 0 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 GLU D 367 REMARK 465 ALA D 368 REMARK 465 LYS D 369 REMARK 465 PRO D 370 REMARK 465 SER D 371 REMARK 465 GLY D 372 REMARK 465 SER D 373 REMARK 465 VAL D 374 REMARK 465 VAL D 375 REMARK 465 GLU D 376 REMARK 465 GLN D 377 REMARK 465 ALA D 378 REMARK 465 GLU D 379 REMARK 465 GLY D 380 REMARK 465 GLU D 589 REMARK 465 HIS D 590 REMARK 465 HIS D 591 REMARK 465 HIS D 592 REMARK 465 HIS D 593 REMARK 465 HIS D 594 REMARK 465 HIS D 595 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 53 OG1 THR D 489 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER B 11 N SER A 10 7455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 90 -165.06 -180.00 REMARK 500 ARG B 109 -61.87 -126.89 REMARK 500 TYR B 114 71.77 53.67 REMARK 500 ASN A 32 -153.70 -157.00 REMARK 500 ASP A 99 77.24 57.77 REMARK 500 SER D 459 -95.51 81.69 REMARK 500 ASN D 468 -72.14 -112.27 REMARK 500 ASP D 510 161.25 70.80 REMARK 500 ASP D 580 114.16 -27.58 REMARK 500 ASN D 582 98.51 -59.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 8IDM B 1 135 PDB 8IDM 8IDM 1 135 DBREF 8IDM A 0 135 PDB 8IDM 8IDM 0 135 DBREF 8IDM D 367 589 UNP R9UQ53 R9UQ53_MERS 367 589 SEQADV 8IDM HIS D 590 UNP R9UQ53 EXPRESSION TAG SEQADV 8IDM HIS D 591 UNP R9UQ53 EXPRESSION TAG SEQADV 8IDM HIS D 592 UNP R9UQ53 EXPRESSION TAG SEQADV 8IDM HIS D 593 UNP R9UQ53 EXPRESSION TAG SEQADV 8IDM HIS D 594 UNP R9UQ53 EXPRESSION TAG SEQADV 8IDM HIS D 595 UNP R9UQ53 EXPRESSION TAG SEQRES 1 B 135 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 135 ALA GLY GLY SER LEU ARG LEU SER CYS SER GLY TYR THR SEQRES 3 B 135 TYR SER SER ASN CYS VAL VAL TRP PHE ARG GLN THR PRO SEQRES 4 B 135 GLY LYS GLU ARG GLU VAL VAL ALA SER ILE TYR THR GLY SEQRES 5 B 135 ASP ASN SER THR TYR TYR ALA ASP SER VAL LYS GLY ARG SEQRES 6 B 135 PHE THR ILE SER LEU ASP ASN GLY LYS LYS THR LEU TYR SEQRES 7 B 135 LEU GLN MET ASP SER LEU GLU ALA GLU ASP THR ALA ARG SEQRES 8 B 135 TYR TYR CYS ALA ALA GLY ALA ALA THR THR GLN THR MET SEQRES 9 B 135 VAL ALA CYS GLY ARG THR PRO GLY PRO TYR GLU LEU LYS SEQRES 10 B 135 TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER HIS SEQRES 11 B 135 HIS HIS HIS HIS HIS SEQRES 1 A 136 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 A 136 ALA GLY GLY SER LEU THR LEU SER CYS THR PHE SER SER SEQRES 3 A 136 GLU TYR THR PHE THR HIS ASN ALA VAL GLY TRP PHE ARG SEQRES 4 A 136 GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL ALA ALA ILE SEQRES 5 A 136 ASN GLY GLY GLY GLY SER THR TYR TYR ALA ASP SER VAL SEQRES 6 A 136 LYS ASP ARG PHE THR ILE SER ARG ASP ASN ALA ASN THR SEQRES 7 A 136 VAL ALA SER LEU ILE MET LYS ASN LEU LYS PRO GLU ASP SEQRES 8 A 136 SER GLY ILE TYR TYR CYS ALA THR ASP VAL ARG LEU ILE SEQRES 9 A 136 ASP TRP TYR SER GLY ASP TRP SER LEU ALA ARG LEU TYR SEQRES 10 A 136 SER THR TRP GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS SEQRES 1 D 229 GLU ALA LYS PRO SER GLY SER VAL VAL GLU GLN ALA GLU SEQRES 2 D 229 GLY VAL GLU CYS ASP PHE SER PRO LEU LEU SER GLY THR SEQRES 3 D 229 PRO PRO GLN VAL TYR ASN PHE LYS ARG LEU VAL PHE THR SEQRES 4 D 229 ASN CYS ASN TYR ASN LEU THR LYS LEU LEU SER LEU PHE SEQRES 5 D 229 SER VAL ASN ASP PHE THR CYS SER GLN ILE SER PRO ALA SEQRES 6 D 229 ALA ILE ALA SER ASN CYS TYR SER SER LEU ILE LEU ASP SEQRES 7 D 229 TYR PHE SER TYR PRO LEU SER MET LYS SER ASP LEU SER SEQRES 8 D 229 VAL SER SER ALA GLY PRO ILE SER GLN PHE ASN TYR LYS SEQRES 9 D 229 GLN SER PHE SER ASN PRO THR CYS LEU ILE LEU ALA THR SEQRES 10 D 229 VAL PRO HIS ASN LEU THR THR ILE THR LYS PRO LEU LYS SEQRES 11 D 229 TYR SER TYR ILE ASN LYS CYS SER ARG LEU LEU SER ASP SEQRES 12 D 229 ASP ARG THR GLU VAL PRO GLN LEU VAL ASN ALA ASN GLN SEQRES 13 D 229 TYR SER PRO CYS VAL SER ILE VAL PRO SER THR VAL TRP SEQRES 14 D 229 GLU ASP GLY ASP TYR TYR ARG LYS GLN LEU SER PRO LEU SEQRES 15 D 229 GLU GLY GLY GLY TRP LEU VAL ALA SER GLY SER THR VAL SEQRES 16 D 229 ALA MET THR GLU GLN LEU GLN MET GLY PHE GLY ILE THR SEQRES 17 D 229 VAL GLN TYR GLY THR ASP THR ASN SER VAL CYS PRO LYS SEQRES 18 D 229 LEU GLU HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET FUC C 2 10 HET NAG E 1 14 HET NAG E 2 14 HET NAG D 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 HELIX 1 AA1 GLU B 85 THR B 89 5 5 HELIX 2 AA2 THR B 100 CYS B 107 1 8 HELIX 3 AA3 GLY A 54 GLY A 56 5 3 HELIX 4 AA4 LYS A 87 SER A 91 5 5 HELIX 5 AA5 ARG A 101 SER A 107 1 7 HELIX 6 AA6 LEU A 112 TYR A 116 5 5 HELIX 7 AA7 PHE D 385 SER D 390 1 6 HELIX 8 AA8 GLN D 395 PHE D 399 5 5 HELIX 9 AA9 ASN D 410 PHE D 418 1 9 HELIX 10 AB1 SER D 429 ASN D 436 1 8 HELIX 11 AB2 PRO D 449 SER D 451 5 3 HELIX 12 AB3 MET D 452 VAL D 458 1 7 HELIX 13 AB4 GLY D 462 ASN D 468 1 7 HELIX 14 AB5 SER D 524 SER D 528 5 5 SHEET 1 AA1 4 GLN B 5 SER B 7 0 SHEET 2 AA1 4 LEU B 18 SER B 23 -1 O SER B 21 N SER B 7 SHEET 3 AA1 4 THR B 76 MET B 81 -1 O LEU B 79 N LEU B 20 SHEET 4 AA1 4 PHE B 66 LEU B 70 -1 N SER B 69 O TYR B 78 SHEET 1 AA2 6 GLY B 10 GLN B 13 0 SHEET 2 AA2 6 THR B 123 SER B 128 1 O THR B 126 N GLY B 10 SHEET 3 AA2 6 ALA B 90 ALA B 96 -1 N ALA B 90 O VAL B 125 SHEET 4 AA2 6 CYS B 31 GLN B 37 -1 N GLN B 37 O ARG B 91 SHEET 5 AA2 6 ARG B 43 TYR B 50 -1 O VAL B 46 N TRP B 34 SHEET 6 AA2 6 SER B 55 TYR B 58 -1 O TYR B 57 N SER B 48 SHEET 1 AA3 4 GLY B 10 GLN B 13 0 SHEET 2 AA3 4 THR B 123 SER B 128 1 O THR B 126 N GLY B 10 SHEET 3 AA3 4 ALA B 90 ALA B 96 -1 N ALA B 90 O VAL B 125 SHEET 4 AA3 4 TYR B 118 TRP B 119 -1 O TYR B 118 N ALA B 96 SHEET 1 AA4 4 LEU A 3 SER A 6 0 SHEET 2 AA4 4 LEU A 17 PHE A 23 -1 O THR A 22 N GLN A 4 SHEET 3 AA4 4 VAL A 78 MET A 83 -1 O ALA A 79 N CYS A 21 SHEET 4 AA4 4 PHE A 68 ARG A 72 -1 N THR A 69 O ILE A 82 SHEET 1 AA5 6 GLY A 9 GLN A 12 0 SHEET 2 AA5 6 THR A 123 SER A 128 1 O THR A 126 N VAL A 11 SHEET 3 AA5 6 GLY A 92 THR A 98 -1 N GLY A 92 O VAL A 125 SHEET 4 AA5 6 ALA A 33 GLN A 39 -1 N GLN A 39 O ILE A 93 SHEET 5 AA5 6 GLU A 46 ASN A 52 -1 O GLU A 46 N ARG A 38 SHEET 6 AA5 6 THR A 58 TYR A 60 -1 O TYR A 59 N ALA A 50 SHEET 1 AA6 4 GLY A 9 GLN A 12 0 SHEET 2 AA6 4 THR A 123 SER A 128 1 O THR A 126 N VAL A 11 SHEET 3 AA6 4 GLY A 92 THR A 98 -1 N GLY A 92 O VAL A 125 SHEET 4 AA6 4 THR A 118 TRP A 119 -1 O THR A 118 N THR A 98 SHEET 1 AA7 5 LYS D 400 PHE D 404 0 SHEET 2 AA7 5 SER D 440 SER D 447 -1 O LEU D 443 N LEU D 402 SHEET 3 AA7 5 GLN D 568 GLN D 576 -1 O GLY D 572 N ASP D 444 SHEET 4 AA7 5 THR D 477 THR D 483 -1 N ILE D 480 O PHE D 571 SHEET 5 AA7 5 SER D 419 SER D 426 -1 N ASN D 421 O LEU D 481 SHEET 1 AA8 2 ASN D 408 TYR D 409 0 SHEET 2 AA8 2 CYS D 585 PRO D 586 1 O CYS D 585 N TYR D 409 SHEET 1 AA9 4 GLU D 513 PRO D 515 0 SHEET 2 AA9 4 LYS D 496 LEU D 506 -1 N ARG D 505 O VAL D 514 SHEET 3 AA9 4 TRP D 553 ALA D 562 -1 O VAL D 561 N TYR D 497 SHEET 4 AA9 4 TYR D 540 GLN D 544 -1 N TYR D 541 O ALA D 556 SSBOND 1 CYS B 22 CYS B 94 1555 1555 2.03 SSBOND 2 CYS B 31 CYS B 107 1555 1555 2.03 SSBOND 3 CYS A 21 CYS A 96 1555 1555 2.04 SSBOND 4 CYS D 383 CYS D 407 1555 1555 2.04 SSBOND 5 CYS D 425 CYS D 478 1555 1555 2.03 SSBOND 6 CYS D 437 CYS D 585 1555 1555 2.04 SSBOND 7 CYS D 503 CYS D 526 1555 1555 2.03 LINK ND2 ASN B 54 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN D 410 C1 NAG D 601 1555 1555 1.45 LINK ND2 ASN D 487 C1 NAG E 1 1555 1555 1.46 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 CRYST1 104.440 104.440 318.223 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009575 0.005528 0.000000 0.00000 SCALE2 0.000000 0.011056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003142 0.00000