HEADER OXIDOREDUCTASE 24-FEB-23 8IHZ TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH (5-(1-(3-(4- TITLE 2 CHLOROPHENYL)PROPYL)-1H-1,2,3-TRIAZOL-4-YL)-3-HYDROXYPICOLINOYL) TITLE 3 GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR, FIH, 2OG DEPENDENT KEYWDS 2 DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,T.CORNER,X.ZHANG,C.J.SCHOFIELD REVDAT 1 28-FEB-24 8IHZ 0 JRNL AUTH Y.NAKASHIMA,T.CORNER,X.ZHANG,C.J.SCHOFIELD JRNL TITL A SMALL-MOLECULE FIH INHIBITOR BINDING TO A TYROSINE-FLIP JRNL TITL 2 POCKET AMELIORATES OBESITY AND MAFLD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 27243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.2200 - 5.3500 1.00 2070 156 0.2184 0.2839 REMARK 3 2 5.3500 - 4.2500 1.00 1948 148 0.1747 0.1871 REMARK 3 3 4.2500 - 3.7100 1.00 1908 145 0.1934 0.2278 REMARK 3 4 3.7100 - 3.3700 1.00 1906 144 0.2326 0.2721 REMARK 3 5 3.3700 - 3.1300 1.00 1879 142 0.2572 0.2748 REMARK 3 6 3.1300 - 2.9400 1.00 1873 141 0.2776 0.3716 REMARK 3 7 2.9400 - 2.8000 1.00 1862 141 0.3093 0.3557 REMARK 3 8 2.8000 - 2.6800 1.00 1862 142 0.3004 0.3234 REMARK 3 9 2.6800 - 2.5700 1.00 1884 142 0.3060 0.3266 REMARK 3 10 2.5700 - 2.4800 1.00 1831 139 0.3064 0.2669 REMARK 3 11 2.4800 - 2.4100 1.00 1861 141 0.3155 0.3179 REMARK 3 12 2.4100 - 2.3400 1.00 1843 139 0.3449 0.3657 REMARK 3 13 2.3400 - 2.2800 0.86 1593 118 0.3701 0.3526 REMARK 3 14 2.2800 - 2.2200 0.54 999 86 0.3865 0.3911 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.359 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.571 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2905 REMARK 3 ANGLE : 1.088 3966 REMARK 3 CHIRALITY : 0.054 393 REMARK 3 PLANARITY : 0.007 516 REMARK 3 DIHEDRAL : 20.499 1033 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1336 28.4519 13.5031 REMARK 3 T TENSOR REMARK 3 T11: 0.4519 T22: 0.3381 REMARK 3 T33: 0.6148 T12: 0.3194 REMARK 3 T13: -0.7642 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 0.1921 L22: -0.0104 REMARK 3 L33: 0.2288 L12: -0.1779 REMARK 3 L13: -0.1547 L23: -0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.5272 S12: -0.0461 S13: 3.0402 REMARK 3 S21: -0.1406 S22: 0.5105 S23: -1.2184 REMARK 3 S31: -2.7486 S32: 1.2102 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2090 25.2970 14.6281 REMARK 3 T TENSOR REMARK 3 T11: 0.9333 T22: 0.6096 REMARK 3 T33: 0.6769 T12: -0.0842 REMARK 3 T13: -0.1837 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.4200 L22: 0.3302 REMARK 3 L33: 0.4832 L12: 0.2518 REMARK 3 L13: 0.1911 L23: 0.4372 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.1283 S13: -0.0551 REMARK 3 S21: -0.6216 S22: 0.0303 S23: 0.3488 REMARK 3 S31: 0.0344 S32: 0.0002 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8720 22.2444 40.7349 REMARK 3 T TENSOR REMARK 3 T11: 0.6614 T22: 0.1651 REMARK 3 T33: -0.1924 T12: -0.2416 REMARK 3 T13: 0.1989 T23: 0.3834 REMARK 3 L TENSOR REMARK 3 L11: 0.6449 L22: 0.6319 REMARK 3 L33: 0.3150 L12: -1.1920 REMARK 3 L13: -0.5223 L23: -0.2500 REMARK 3 S TENSOR REMARK 3 S11: 0.1883 S12: -0.3585 S13: -0.1740 REMARK 3 S21: -0.6656 S22: -1.4223 S23: 1.7394 REMARK 3 S31: -0.1182 S32: -1.0826 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2277 14.8844 29.2901 REMARK 3 T TENSOR REMARK 3 T11: 0.9746 T22: 0.5923 REMARK 3 T33: 0.6949 T12: -0.0710 REMARK 3 T13: -0.0907 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.4957 L22: 0.9726 REMARK 3 L33: 0.5049 L12: 0.3622 REMARK 3 L13: 0.7175 L23: 0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.2062 S12: -0.2692 S13: -0.3431 REMARK 3 S21: 0.3713 S22: -0.0811 S23: -0.0557 REMARK 3 S31: 0.4644 S32: 0.1094 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0615 35.6876 29.1092 REMARK 3 T TENSOR REMARK 3 T11: 0.6658 T22: 0.5308 REMARK 3 T33: 0.6081 T12: -0.0024 REMARK 3 T13: -0.0683 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.3503 L22: 0.7581 REMARK 3 L33: 1.1505 L12: 0.3733 REMARK 3 L13: 0.4989 L23: 0.1599 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.0352 S13: -0.0161 REMARK 3 S21: -0.0439 S22: 0.1013 S23: 0.1410 REMARK 3 S31: 0.0431 S32: 0.0949 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1300035532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 74.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.60 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.60 REMARK 200 R MERGE FOR SHELL (I) : 5.60100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.70800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.28900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.28900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.85400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.28900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.28900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.56200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.28900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.28900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.85400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.28900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.28900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.56200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.70800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 9 CG1 CG2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ARG A 17 CZ NH1 NH2 REMARK 470 GLU A 19 CD OE1 OE2 REMARK 470 LEU A 23 CD1 CD2 REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 LYS A 106 CD CE NZ REMARK 470 MET A 108 CE REMARK 470 ASN A 113 CG OD1 ND2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 GLN A 133 OE1 NE2 REMARK 470 GLN A 136 CG CD OE1 NE2 REMARK 470 LEU A 150 CG CD1 CD2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 298 CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 306 CG1 CD1 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CD CE NZ REMARK 470 GLU A 328 CD OE1 OE2 REMARK 470 LYS A 345 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 10 HG SER A 13 1.44 REMARK 500 HG1 THR A 39 OE1 GLU A 262 1.57 REMARK 500 O HOH A 1633 O HOH A 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 323 HH22 ARG A 347 8665 1.57 REMARK 500 OH TYR A 71 OE2 GLU A 225 5545 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 13 CB SER A 13 OG 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 41.37 -151.06 REMARK 500 ASP A 66 41.37 -150.70 REMARK 500 ASN A 87 73.07 -109.37 REMARK 500 PHE A 100 77.44 -110.67 REMARK 500 ASN A 110 -74.27 -68.22 REMARK 500 GLU A 121 114.99 -165.71 REMARK 500 ILE A 210 -59.32 -127.96 REMARK 500 ARG A 238 -2.79 93.03 REMARK 500 TYR A 276 -10.04 72.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1675 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A1676 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1677 DISTANCE = 7.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1514 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 124.5 REMARK 620 3 HIS A 279 NE2 78.2 82.8 REMARK 620 4 P1X A1516 O07 99.5 134.9 98.9 REMARK 620 5 P1X A1516 N09 97.8 106.2 170.7 73.3 REMARK 620 N 1 2 3 4 DBREF 8IHZ A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET SO4 A1501 5 HET SO4 A1502 5 HET SO4 A1503 5 HET SO4 A1504 5 HET SO4 A1505 5 HET SO4 A1506 5 HET SO4 A1507 5 HET SO4 A1508 5 HET SO4 A1509 5 HET SO4 A1510 5 HET SO4 A1511 5 HET SO4 A1512 5 HET SO4 A1513 5 HET ZN A1514 1 HET SO4 A1515 5 HET P1X A1516 46 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM P1X 2-[[5-[1-[3-(4-CHLOROPHENYL)PROPYL]-1,2,3-TRIAZOL-4- HETNAM 2 P1X YL]-3-OXIDANYL-PYRIDIN-2-YL]CARBONYLAMINO]ETHANOIC HETNAM 3 P1X ACID HETSYN P1X (5-(1-(3-(4-CHLOROPHENYL)PROPYL)-1H-1,2,3-TRIAZOL-4- HETSYN 2 P1X YL)-3-HYDROXYPICOLINOYL)GLYCINE FORMUL 2 SO4 14(O4 S 2-) FORMUL 15 ZN ZN 2+ FORMUL 17 P1X C19 H18 CL N5 O4 FORMUL 18 HOH *77(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 GLU A 105 ASN A 110 5 6 HELIX 7 AA7 LYS A 124 GLY A 139 1 16 HELIX 8 AA8 GLY A 155 GLY A 164 1 10 HELIX 9 AA9 ASN A 166 ARG A 177 1 12 HELIX 10 AB1 PRO A 220 ASP A 222 5 3 HELIX 11 AB2 GLN A 223 TYR A 228 1 6 HELIX 12 AB3 PHE A 252 VAL A 258 5 7 HELIX 13 AB4 LYS A 311 LEU A 330 1 20 HELIX 14 AB5 ASN A 332 GLN A 334 5 3 HELIX 15 AB6 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O GLU A 282 N ARG A 215 SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 8 ARG A 44 LEU A 45 0 SHEET 2 AA2 8 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 8 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 8 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 8 THR A 290 TYR A 297 -1 O ILE A 291 N LYS A 211 SHEET 6 AA2 8 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 8 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 8 VAL A 92 ALA A 95 -1 N ALA A 95 O ARG A 143 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O ILE A 291 N LYS A 211 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A1514 1555 1555 2.11 LINK OD2 ASP A 201 ZN ZN A1514 1555 1555 2.17 LINK NE2 HIS A 279 ZN ZN A1514 1555 1555 2.33 LINK ZN ZN A1514 O07 P1X A1516 1555 1555 2.30 LINK ZN ZN A1514 N09 P1X A1516 1555 1555 2.18 CISPEP 1 TYR A 308 PRO A 309 0 -6.42 CRYST1 86.578 86.578 147.416 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011550 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006784 0.00000