HEADER DNA BINDING PROTEIN 28-FEB-23 8IJY TITLE SYNECHOCOCCUS ELONGATUS 6-4 PHOTOLYASE WITH AN 8-HDF AS THE ANTENNA TITLE 2 CHROMOPHORE AND A COVALENTLY LINKED FAD AS THE CATALYTIC COFACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBODIPYRIMIDINE PHOTOLYASE-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: WP_011377897.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942 = FACHB-805; SOURCE 3 ORGANISM_COMMON: ANACYSTIS NIDULANS R2; SOURCE 4 ORGANISM_TAXID: 1140; SOURCE 5 GENE: SYNPCC7942_1171; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETSEPHRB KEYWDS PHOTOLYASE, 6-4 PHOTOPRODUCT, 8-HDF, COVALENTLY LINKED FAD, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,L.XU,P.ZHANG REVDAT 1 04-SEP-24 8IJY 0 JRNL AUTH Y.LIU,L.XU,P.ZHANG JRNL TITL SYNECHOCOCCUS ELONGATUS 6-4 PHOTOLYASE WITH AN 8-HDF AS THE JRNL TITL 2 ANTENNA CHROMOPHORE AND A COVALENTLY LINKED FAD AS THE JRNL TITL 3 CATALYTIC COFACTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 19669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 923 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.685 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4407 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4035 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6015 ; 2.403 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9241 ; 1.323 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 6.300 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;36.129 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;14.379 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 625 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4954 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1117 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 2.664 ; 3.556 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2010 ; 2.662 ; 3.553 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2512 ; 3.852 ; 5.321 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2513 ; 3.852 ; 5.322 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2395 ; 3.544 ; 3.915 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2395 ; 3.544 ; 3.915 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3492 ; 5.278 ; 5.718 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5426 ; 6.875 ;29.887 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5317 ; 6.809 ;29.710 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8IJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 10-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300035586. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22021 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 75.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: GREEN FLAT CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 8000 , 100 MM TRIS BASE/ REMARK 280 HYDROCHLORIC ACID PH 8.5, 200 MM MAGNESIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.60850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.60850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.55800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.56800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.55800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.56800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.60850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.55800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.56800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.60850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.55800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.56800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 503 REMARK 465 ALA A 504 REMARK 465 ALA A 505 REMARK 465 ALA A 506 REMARK 465 LEU A 507 REMARK 465 GLU A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 THR A 184 OG1 CG2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 SER A 417 OG REMARK 470 GLN A 465 CG CD OE1 NE2 REMARK 470 ARG A 472 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 100 122.09 -39.95 REMARK 500 ASN A 178 48.13 -109.62 REMARK 500 ARG A 179 21.70 -146.28 REMARK 500 MET A 259 -136.95 62.37 REMARK 500 ASP A 330 15.64 -141.30 REMARK 500 ILE A 368 -61.42 -97.51 REMARK 500 ALA A 421 143.68 -39.03 REMARK 500 PRO A 484 163.81 -49.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 346 SG REMARK 620 2 SF4 A 601 S1 123.7 REMARK 620 3 SF4 A 601 S3 122.9 98.6 REMARK 620 4 SF4 A 601 S4 110.7 98.9 96.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 434 SG REMARK 620 2 SF4 A 601 S1 117.8 REMARK 620 3 SF4 A 601 S2 118.0 99.1 REMARK 620 4 SF4 A 601 S3 122.6 97.3 97.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 437 SG REMARK 620 2 SF4 A 601 S2 119.4 REMARK 620 3 SF4 A 601 S3 112.7 97.1 REMARK 620 4 SF4 A 601 S4 123.3 103.2 95.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 601 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 450 SG REMARK 620 2 SF4 A 601 S1 113.5 REMARK 620 3 SF4 A 601 S2 121.1 98.2 REMARK 620 4 SF4 A 601 S4 120.0 98.7 101.1 REMARK 620 N 1 2 3 DBREF 8IJY A 1 503 UNP Q31P18 Q31P18_SYNE7 1 503 SEQADV 8IJY ALA A 504 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY ALA A 505 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY ALA A 506 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY LEU A 507 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY GLU A 508 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY HIS A 509 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY HIS A 510 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY HIS A 511 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY HIS A 512 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY HIS A 513 UNP Q31P18 EXPRESSION TAG SEQADV 8IJY HIS A 514 UNP Q31P18 EXPRESSION TAG SEQRES 1 A 514 MET THR VAL GLY ILE TRP ILE LEU GLY ASP GLN LEU THR SEQRES 2 A 514 LEU GLN HIS PRO ALA LEU SER SER ARG ALA VAL ASP GLN SEQRES 3 A 514 SER GLN THR ARG ILE LEU LEU VAL GLU SER LEU GLU HIS SEQRES 4 A 514 ALA GLN ARG ARG PRO TYR HIS ARG GLN LYS LEU VAL LEU SEQRES 5 A 514 LEU TRP SER ALA MET ARG HIS PHE ALA ASP GLU LEU ARG SEQRES 6 A 514 SER GLN GLY TRP THR VAL ASP TYR VAL GLU GLN ALA ASP SEQRES 7 A 514 SER PHE GLN THR ALA VAL SER ALA TRP CYS GLN GLN TYR SEQRES 8 A 514 GLN ILE ALA GLU LEU GLN VAL MET GLU PRO ALA ASP ARG SEQRES 9 A 514 SER PHE ARG ALA ILE ILE SER SER LEU GLU LEU THR SER SEQRES 10 A 514 SER LEU HIS TRP LEU SER ASN CYS GLN PHE LEU TRP SER SEQRES 11 A 514 THR ALA GLU PHE THR ALA TRP ALA LYS PRO TYR ARG GLN SEQRES 12 A 514 LEU ARG LEU GLU ASN PHE TYR ARG GLU GLY ARG LYS ARG SEQRES 13 A 514 TRP GLN VAL LEU LEU THR GLU ASP GLN GLU PRO ILE GLY SEQRES 14 A 514 GLY GLN TRP ASN PHE ASP PRO GLU ASN ARG LYS PRO PRO SEQRES 15 A 514 LYS THR GLY LEU GLN PRO PRO PRO ALA ALA HIS PHE LEU SEQRES 16 A 514 PRO ASP ALA ILE THR GLN THR VAL ILE GLU THR VAL ARG SEQRES 17 A 514 SER LEU GLU LEU PRO LEU TYR GLY LYS LEU GLU PRO PHE SEQRES 18 A 514 HIS TRP PRO VAL THR ARG SER GLN ALA LEU GLU ALA LEU SEQRES 19 A 514 ASP GLN PHE LEU THR VAL LYS LEU LYS THR PHE GLY PRO SEQRES 20 A 514 TYR GLN ASP ALA MET VAL SER GLY GLN ALA THR MET TRP SEQRES 21 A 514 HIS SER LEU ILE ALA PRO ALA LEU ASN LEU GLY LEU LEU SEQRES 22 A 514 HIS PRO LEU GLU VAL ILE ARG GLN THR GLU GLN ALA PHE SEQRES 23 A 514 HIS ASN ASN GLN ALA PRO ILE ALA SER VAL GLU GLY PHE SEQRES 24 A 514 ILE ARG GLN ILE LEU GLY TRP ARG GLU TYR MET TYR GLY SEQRES 25 A 514 LEU HIS HIS TYR PHE PRO ASP THR TYR GLY GLN SER ASN SEQRES 26 A 514 TRP PHE GLU HIS ASP ARG PRO LEU PRO GLU PHE PHE TRP SEQRES 27 A 514 THR GLY GLN THR ASP LEU HIS CYS LEU GLN GLN CYS PHE SEQRES 28 A 514 GLN GLN ILE GLU ALA ILE GLY TYR SER HIS HIS ILE GLN SEQRES 29 A 514 ARG LEU MET ILE LEU ALA ASN PHE ALA LEU ILE ALA GLY SEQRES 30 A 514 LEU ASP PRO TRP ALA VAL LYS GLU TRP PHE GLN ALA THR SEQRES 31 A 514 HIS LEU ASP ALA TYR ASP TRP VAL MET GLU THR ASN VAL SEQRES 32 A 514 LEU GLY MET GLY LEU PHE ALA ASP GLY GLY LYS LEU ALA SEQRES 33 A 514 SER LYS PRO TYR ALA ALA SER ALA ASN TYR ILE ASN ARG SEQRES 34 A 514 MET SER ASN TYR CYS GLN ASN CYS ARG TYR ASP PRO LYS SEQRES 35 A 514 GLN ARG LEU GLY ASP ARG ALA CYS PRO PHE ASN ALA LEU SEQRES 36 A 514 TYR TRP ASP PHE LEU ASP ARG HIS GLU GLN LYS LEU GLN SEQRES 37 A 514 ALA GLN GLY ARG MET GLY LEU ILE LEU LYS GLN LEU GLN SEQRES 38 A 514 LYS LEU PRO ASP SER ASP ARG ALA ALA ILE ARG ASP GLN SEQRES 39 A 514 ALA ALA HIS TRP GLN ALA SER TRP ASP ALA ALA ALA LEU SEQRES 40 A 514 GLU HIS HIS HIS HIS HIS HIS HET SF4 A 601 8 HET HDF A 602 26 HET FAD A 603 53 HET GOL A 604 6 HET GOL A 605 6 HET TRS A 606 8 HET GOL A 607 6 HET GOL A 608 6 HET GOL A 609 6 HET GOL A 610 6 HET GOL A 611 6 HET GOL A 612 6 HET GOL A 613 6 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM HDF 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5- HETNAM 2 HDF DEAZAISOALLOXAZINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 2 SF4 FE4 S4 FORMUL 3 HDF C16 H17 N3 O7 FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 GOL 9(C3 H8 O3) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 15 HOH *278(H2 O) HELIX 1 AA1 HIS A 16 ARG A 22 1 7 HELIX 2 AA2 ALA A 23 SER A 27 5 5 HELIX 3 AA3 LEU A 37 GLN A 41 1 5 HELIX 4 AA4 HIS A 46 GLN A 67 1 22 HELIX 5 AA5 SER A 79 TYR A 91 1 13 HELIX 6 AA6 SER A 105 LEU A 113 1 9 HELIX 7 AA7 SER A 130 LYS A 139 1 10 HELIX 8 AA8 ARG A 145 TRP A 157 1 13 HELIX 9 AA9 PHE A 174 ASN A 178 5 5 HELIX 10 AB1 ASP A 197 SER A 209 1 13 HELIX 11 AB2 THR A 226 LYS A 241 1 16 HELIX 12 AB3 LEU A 242 PHE A 245 5 4 HELIX 13 AB4 ILE A 264 LEU A 270 1 7 HELIX 14 AB5 HIS A 274 ASN A 288 1 15 HELIX 15 AB6 PRO A 292 GLY A 305 1 14 HELIX 16 AB7 GLY A 305 PHE A 317 1 13 HELIX 17 AB8 THR A 320 SER A 324 5 5 HELIX 18 AB9 GLU A 335 GLY A 340 1 6 HELIX 19 AC1 LEU A 344 GLY A 358 1 15 HELIX 20 AC2 HIS A 361 ILE A 368 1 8 HELIX 21 AC3 ILE A 368 ALA A 376 1 9 HELIX 22 AC4 ASP A 379 HIS A 391 1 13 HELIX 23 AC5 TYR A 395 GLY A 405 1 11 HELIX 24 AC6 SER A 423 SER A 431 1 9 HELIX 25 AC7 ASN A 432 CYS A 437 5 6 HELIX 26 AC8 CYS A 450 HIS A 463 1 14 HELIX 27 AC9 HIS A 463 GLY A 471 1 9 HELIX 28 AD1 MET A 473 LYS A 482 1 10 HELIX 29 AD2 PRO A 484 TRP A 502 1 19 SHEET 1 AA1 5 VAL A 71 ALA A 77 0 SHEET 2 AA1 5 THR A 29 SER A 36 1 N ILE A 31 O ASP A 72 SHEET 3 AA1 5 VAL A 3 TRP A 6 1 N ILE A 5 O LEU A 32 SHEET 4 AA1 5 GLU A 95 MET A 99 1 O GLN A 97 N GLY A 4 SHEET 5 AA1 5 SER A 118 LEU A 122 1 O SER A 118 N LEU A 96 LINK CE MET A 399 N5 FAD A 603 1555 1555 1.49 LINK SG CYS A 346 FE2 SF4 A 601 1555 1555 2.24 LINK SG CYS A 434 FE4 SF4 A 601 1555 1555 2.23 LINK SG CYS A 437 FE1 SF4 A 601 1555 1555 2.24 LINK SG CYS A 450 FE3 SF4 A 601 1555 1555 2.25 CISPEP 1 GLU A 219 PRO A 220 0 2.03 CRYST1 105.116 109.136 95.217 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010502 0.00000