data_8IK7 # _entry.id 8IK7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8IK7 pdb_00008ik7 10.2210/pdb8ik7/pdb WWPDB D_1300035835 ? ? EMDB EMD-35505 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8IK7 _pdbx_database_status.recvd_initial_deposition_date 2023-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of hnRAC1 fibril.' _pdbx_database_related.db_id EMD-35505 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dannielee@sjtu.edu.cn _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, D.N.' 1 ? 'Ma, Y.Y.' 2 ? 'Li, D.' 3 ? 'Dai, B.' 4 ? 'Liu, C.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Formed fibrils of hnRNP A1 reversible amyloid core GFGGNDNFG (residues 209-217)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.N.' 1 ? primary 'Ma, Y.Y.' 2 ? primary 'Li, D.' 3 ? primary 'Dai, B.' 4 ? primary 'Liu, C.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description GLY-PHE-GLY-GLY-ASN-ASP-ASN-PHE-GLY _entity.formula_weight 883.863 _entity.pdbx_number_of_molecules 24 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GFGGNDNFG _entity_poly.pdbx_seq_one_letter_code_can GFGGNDNFG _entity_poly.pdbx_strand_id C,L,M,K,G,I,U,O,R,V,P,S,X,D,E,A,B,N,J,F,H,W,Q,T _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PHE n 1 3 GLY n 1 4 GLY n 1 5 ASN n 1 6 ASP n 1 7 ASN n 1 8 PHE n 1 9 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 215 215 GLY GLY C . n A 1 2 PHE 2 216 216 PHE PHE C . n A 1 3 GLY 3 217 217 GLY GLY C . n A 1 4 GLY 4 218 218 GLY GLY C . n A 1 5 ASN 5 219 219 ASN ASN C . n A 1 6 ASP 6 220 220 ASP ASP C . n A 1 7 ASN 7 221 221 ASN ASN C . n A 1 8 PHE 8 222 222 PHE PHE C . n A 1 9 GLY 9 223 223 GLY GLY C . n B 1 1 GLY 1 215 215 GLY GLY L . n B 1 2 PHE 2 216 216 PHE PHE L . n B 1 3 GLY 3 217 217 GLY GLY L . n B 1 4 GLY 4 218 218 GLY GLY L . n B 1 5 ASN 5 219 219 ASN ASN L . n B 1 6 ASP 6 220 220 ASP ASP L . n B 1 7 ASN 7 221 221 ASN ASN L . n B 1 8 PHE 8 222 222 PHE PHE L . n B 1 9 GLY 9 223 223 GLY GLY L . n C 1 1 GLY 1 215 215 GLY GLY M . n C 1 2 PHE 2 216 216 PHE PHE M . n C 1 3 GLY 3 217 217 GLY GLY M . n C 1 4 GLY 4 218 218 GLY GLY M . n C 1 5 ASN 5 219 219 ASN ASN M . n C 1 6 ASP 6 220 220 ASP ASP M . n C 1 7 ASN 7 221 221 ASN ASN M . n C 1 8 PHE 8 222 222 PHE PHE M . n C 1 9 GLY 9 223 223 GLY GLY M . n D 1 1 GLY 1 209 209 GLY GLY K . n D 1 2 PHE 2 210 210 PHE PHE K . n D 1 3 GLY 3 211 211 GLY GLY K . n D 1 4 GLY 4 212 212 GLY GLY K . n D 1 5 ASN 5 213 213 ASN ASN K . n D 1 6 ASP 6 214 214 ASP ASP K . n D 1 7 ASN 7 215 215 ASN ASN K . n D 1 8 PHE 8 216 216 PHE PHE K . n D 1 9 GLY 9 217 217 GLY GLY K . n E 1 1 GLY 1 209 209 GLY GLY G . n E 1 2 PHE 2 210 210 PHE PHE G . n E 1 3 GLY 3 211 211 GLY GLY G . n E 1 4 GLY 4 212 212 GLY GLY G . n E 1 5 ASN 5 213 213 ASN ASN G . n E 1 6 ASP 6 214 214 ASP ASP G . n E 1 7 ASN 7 215 215 ASN ASN G . n E 1 8 PHE 8 216 216 PHE PHE G . n E 1 9 GLY 9 217 217 GLY GLY G . n F 1 1 GLY 1 209 209 GLY GLY I . n F 1 2 PHE 2 210 210 PHE PHE I . n F 1 3 GLY 3 211 211 GLY GLY I . n F 1 4 GLY 4 212 212 GLY GLY I . n F 1 5 ASN 5 213 213 ASN ASN I . n F 1 6 ASP 6 214 214 ASP ASP I . n F 1 7 ASN 7 215 215 ASN ASN I . n F 1 8 PHE 8 216 216 PHE PHE I . n F 1 9 GLY 9 217 217 GLY GLY I . n G 1 1 GLY 1 209 209 GLY GLY U . n G 1 2 PHE 2 210 210 PHE PHE U . n G 1 3 GLY 3 211 211 GLY GLY U . n G 1 4 GLY 4 212 212 GLY GLY U . n G 1 5 ASN 5 213 213 ASN ASN U . n G 1 6 ASP 6 214 214 ASP ASP U . n G 1 7 ASN 7 215 215 ASN ASN U . n G 1 8 PHE 8 216 216 PHE PHE U . n G 1 9 GLY 9 217 217 GLY GLY U . n H 1 1 GLY 1 209 209 GLY GLY O . n H 1 2 PHE 2 210 210 PHE PHE O . n H 1 3 GLY 3 211 211 GLY GLY O . n H 1 4 GLY 4 212 212 GLY GLY O . n H 1 5 ASN 5 213 213 ASN ASN O . n H 1 6 ASP 6 214 214 ASP ASP O . n H 1 7 ASN 7 215 215 ASN ASN O . n H 1 8 PHE 8 216 216 PHE PHE O . n H 1 9 GLY 9 217 217 GLY GLY O . n I 1 1 GLY 1 209 209 GLY GLY R . n I 1 2 PHE 2 210 210 PHE PHE R . n I 1 3 GLY 3 211 211 GLY GLY R . n I 1 4 GLY 4 212 212 GLY GLY R . n I 1 5 ASN 5 213 213 ASN ASN R . n I 1 6 ASP 6 214 214 ASP ASP R . n I 1 7 ASN 7 215 215 ASN ASN R . n I 1 8 PHE 8 216 216 PHE PHE R . n I 1 9 GLY 9 217 217 GLY GLY R . n J 1 1 GLY 1 209 209 GLY GLY V . n J 1 2 PHE 2 210 210 PHE PHE V . n J 1 3 GLY 3 211 211 GLY GLY V . n J 1 4 GLY 4 212 212 GLY GLY V . n J 1 5 ASN 5 213 213 ASN ASN V . n J 1 6 ASP 6 214 214 ASP ASP V . n J 1 7 ASN 7 215 215 ASN ASN V . n J 1 8 PHE 8 216 216 PHE PHE V . n J 1 9 GLY 9 217 217 GLY GLY V . n K 1 1 GLY 1 209 209 GLY GLY P . n K 1 2 PHE 2 210 210 PHE PHE P . n K 1 3 GLY 3 211 211 GLY GLY P . n K 1 4 GLY 4 212 212 GLY GLY P . n K 1 5 ASN 5 213 213 ASN ASN P . n K 1 6 ASP 6 214 214 ASP ASP P . n K 1 7 ASN 7 215 215 ASN ASN P . n K 1 8 PHE 8 216 216 PHE PHE P . n K 1 9 GLY 9 217 217 GLY GLY P . n L 1 1 GLY 1 209 209 GLY GLY S . n L 1 2 PHE 2 210 210 PHE PHE S . n L 1 3 GLY 3 211 211 GLY GLY S . n L 1 4 GLY 4 212 212 GLY GLY S . n L 1 5 ASN 5 213 213 ASN ASN S . n L 1 6 ASP 6 214 214 ASP ASP S . n L 1 7 ASN 7 215 215 ASN ASN S . n L 1 8 PHE 8 216 216 PHE PHE S . n L 1 9 GLY 9 217 217 GLY GLY S . n M 1 1 GLY 1 209 209 GLY GLY X . n M 1 2 PHE 2 210 210 PHE PHE X . n M 1 3 GLY 3 211 211 GLY GLY X . n M 1 4 GLY 4 212 212 GLY GLY X . n M 1 5 ASN 5 213 213 ASN ASN X . n M 1 6 ASP 6 214 214 ASP ASP X . n M 1 7 ASN 7 215 215 ASN ASN X . n M 1 8 PHE 8 216 216 PHE PHE X . n M 1 9 GLY 9 217 217 GLY GLY X . n N 1 1 GLY 1 209 209 GLY GLY D . n N 1 2 PHE 2 210 210 PHE PHE D . n N 1 3 GLY 3 211 211 GLY GLY D . n N 1 4 GLY 4 212 212 GLY GLY D . n N 1 5 ASN 5 213 213 ASN ASN D . n N 1 6 ASP 6 214 214 ASP ASP D . n N 1 7 ASN 7 215 215 ASN ASN D . n N 1 8 PHE 8 216 216 PHE PHE D . n N 1 9 GLY 9 217 217 GLY GLY D . n O 1 1 GLY 1 209 209 GLY GLY E . n O 1 2 PHE 2 210 210 PHE PHE E . n O 1 3 GLY 3 211 211 GLY GLY E . n O 1 4 GLY 4 212 212 GLY GLY E . n O 1 5 ASN 5 213 213 ASN ASN E . n O 1 6 ASP 6 214 214 ASP ASP E . n O 1 7 ASN 7 215 215 ASN ASN E . n O 1 8 PHE 8 216 216 PHE PHE E . n O 1 9 GLY 9 217 217 GLY GLY E . n P 1 1 GLY 1 215 215 GLY GLY A . n P 1 2 PHE 2 216 216 PHE PHE A . n P 1 3 GLY 3 217 217 GLY GLY A . n P 1 4 GLY 4 218 218 GLY GLY A . n P 1 5 ASN 5 219 219 ASN ASN A . n P 1 6 ASP 6 220 220 ASP ASP A . n P 1 7 ASN 7 221 221 ASN ASN A . n P 1 8 PHE 8 222 222 PHE PHE A . n P 1 9 GLY 9 223 223 GLY GLY A . n Q 1 1 GLY 1 215 215 GLY GLY B . n Q 1 2 PHE 2 216 216 PHE PHE B . n Q 1 3 GLY 3 217 217 GLY GLY B . n Q 1 4 GLY 4 218 218 GLY GLY B . n Q 1 5 ASN 5 219 219 ASN ASN B . n Q 1 6 ASP 6 220 220 ASP ASP B . n Q 1 7 ASN 7 221 221 ASN ASN B . n Q 1 8 PHE 8 222 222 PHE PHE B . n Q 1 9 GLY 9 223 223 GLY GLY B . n R 1 1 GLY 1 215 215 GLY GLY N . n R 1 2 PHE 2 216 216 PHE PHE N . n R 1 3 GLY 3 217 217 GLY GLY N . n R 1 4 GLY 4 218 218 GLY GLY N . n R 1 5 ASN 5 219 219 ASN ASN N . n R 1 6 ASP 6 220 220 ASP ASP N . n R 1 7 ASN 7 221 221 ASN ASN N . n R 1 8 PHE 8 222 222 PHE PHE N . n R 1 9 GLY 9 223 223 GLY GLY N . n S 1 1 GLY 1 209 209 GLY GLY J . n S 1 2 PHE 2 210 210 PHE PHE J . n S 1 3 GLY 3 211 211 GLY GLY J . n S 1 4 GLY 4 212 212 GLY GLY J . n S 1 5 ASN 5 213 213 ASN ASN J . n S 1 6 ASP 6 214 214 ASP ASP J . n S 1 7 ASN 7 215 215 ASN ASN J . n S 1 8 PHE 8 216 216 PHE PHE J . n S 1 9 GLY 9 217 217 GLY GLY J . n T 1 1 GLY 1 209 209 GLY GLY F . n T 1 2 PHE 2 210 210 PHE PHE F . n T 1 3 GLY 3 211 211 GLY GLY F . n T 1 4 GLY 4 212 212 GLY GLY F . n T 1 5 ASN 5 213 213 ASN ASN F . n T 1 6 ASP 6 214 214 ASP ASP F . n T 1 7 ASN 7 215 215 ASN ASN F . n T 1 8 PHE 8 216 216 PHE PHE F . n T 1 9 GLY 9 217 217 GLY GLY F . n U 1 1 GLY 1 209 209 GLY GLY H . n U 1 2 PHE 2 210 210 PHE PHE H . n U 1 3 GLY 3 211 211 GLY GLY H . n U 1 4 GLY 4 212 212 GLY GLY H . n U 1 5 ASN 5 213 213 ASN ASN H . n U 1 6 ASP 6 214 214 ASP ASP H . n U 1 7 ASN 7 215 215 ASN ASN H . n U 1 8 PHE 8 216 216 PHE PHE H . n U 1 9 GLY 9 217 217 GLY GLY H . n V 1 1 GLY 1 209 209 GLY GLY W . n V 1 2 PHE 2 210 210 PHE PHE W . n V 1 3 GLY 3 211 211 GLY GLY W . n V 1 4 GLY 4 212 212 GLY GLY W . n V 1 5 ASN 5 213 213 ASN ASN W . n V 1 6 ASP 6 214 214 ASP ASP W . n V 1 7 ASN 7 215 215 ASN ASN W . n V 1 8 PHE 8 216 216 PHE PHE W . n V 1 9 GLY 9 217 217 GLY GLY W . n W 1 1 GLY 1 209 209 GLY GLY Q . n W 1 2 PHE 2 210 210 PHE PHE Q . n W 1 3 GLY 3 211 211 GLY GLY Q . n W 1 4 GLY 4 212 212 GLY GLY Q . n W 1 5 ASN 5 213 213 ASN ASN Q . n W 1 6 ASP 6 214 214 ASP ASP Q . n W 1 7 ASN 7 215 215 ASN ASN Q . n W 1 8 PHE 8 216 216 PHE PHE Q . n W 1 9 GLY 9 217 217 GLY GLY Q . n X 1 1 GLY 1 209 209 GLY GLY T . n X 1 2 PHE 2 210 210 PHE PHE T . n X 1 3 GLY 3 211 211 GLY GLY T . n X 1 4 GLY 4 212 212 GLY GLY T . n X 1 5 ASN 5 213 213 ASN ASN T . n X 1 6 ASP 6 214 214 ASP ASP T . n X 1 7 ASN 7 215 215 ASN ASN T . n X 1 8 PHE 8 216 216 PHE PHE T . n X 1 9 GLY 9 217 217 GLY GLY T . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8IK7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8IK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8IK7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8IK7 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.009 ? 1512 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.956 ? 1968 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 6.244 ? 672 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.058 ? 120 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 312 ? f_plane_restr ? ? # _struct.entry_id 8IK7 _struct.title 'Cryo-EM structure of hnRAC1 fibril.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8IK7 _struct_keywords.text 'reversible fibril, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8IK7 _struct_ref.pdbx_db_accession 8IK7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8IK7 C 1 ? 9 ? 8IK7 215 ? 223 ? 215 223 2 1 8IK7 L 1 ? 9 ? 8IK7 215 ? 223 ? 215 223 3 1 8IK7 M 1 ? 9 ? 8IK7 215 ? 223 ? 215 223 4 1 8IK7 K 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 5 1 8IK7 G 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 6 1 8IK7 I 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 7 1 8IK7 U 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 8 1 8IK7 O 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 9 1 8IK7 R 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 10 1 8IK7 V 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 11 1 8IK7 P 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 12 1 8IK7 S 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 13 1 8IK7 X 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 14 1 8IK7 D 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 15 1 8IK7 E 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 16 1 8IK7 A 1 ? 9 ? 8IK7 215 ? 223 ? 215 223 17 1 8IK7 B 1 ? 9 ? 8IK7 215 ? 223 ? 215 223 18 1 8IK7 N 1 ? 9 ? 8IK7 215 ? 223 ? 215 223 19 1 8IK7 J 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 20 1 8IK7 F 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 21 1 8IK7 H 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 22 1 8IK7 W 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 23 1 8IK7 Q 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 24 1 8IK7 T 1 ? 9 ? 8IK7 209 ? 217 ? 209 217 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CZ F PHE 216 ? ? O H PHE 216 ? ? 2.18 2 1 N B GLY 215 ? ? O B GLY 218 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB C PHE 216 ? ? CA C PHE 216 ? ? C C PHE 216 ? ? 132.32 110.40 21.92 2.00 N 2 1 CB L ASN 221 ? ? CA L ASN 221 ? ? C L ASN 221 ? ? 124.03 110.40 13.63 2.00 N 3 1 CB M ASN 219 ? ? CA M ASN 219 ? ? C M ASN 219 ? ? 93.69 110.40 -16.71 2.00 N 4 1 N M ASP 220 ? ? CA M ASP 220 ? ? C M ASP 220 ? ? 127.41 111.00 16.41 2.70 N 5 1 CB M PHE 222 ? ? CA M PHE 222 ? ? C M PHE 222 ? ? 97.85 110.40 -12.55 2.00 N 6 1 N G GLY 211 ? ? CA G GLY 211 ? ? C G GLY 211 ? ? 80.66 113.10 -32.44 2.50 N 7 1 CB G PHE 216 ? ? CA G PHE 216 ? ? C G PHE 216 ? ? 91.55 110.40 -18.85 2.00 N 8 1 N I GLY 211 ? ? CA I GLY 211 ? ? C I GLY 211 ? ? 141.54 113.10 28.44 2.50 N 9 1 N I GLY 212 ? ? CA I GLY 212 ? ? C I GLY 212 ? ? 90.78 113.10 -22.32 2.50 N 10 1 N I ASP 214 ? ? CA I ASP 214 ? ? C I ASP 214 ? ? 78.79 111.00 -32.21 2.70 N 11 1 N I ASN 215 ? ? CA I ASN 215 ? ? CB I ASN 215 ? ? 77.33 110.60 -33.27 1.80 N 12 1 N I PHE 216 ? ? CA I PHE 216 ? ? C I PHE 216 ? ? 91.50 111.00 -19.50 2.70 N 13 1 CB O PHE 216 ? ? CA O PHE 216 ? ? C O PHE 216 ? ? 94.56 110.40 -15.84 2.00 N 14 1 N R GLY 211 ? ? CA R GLY 211 ? ? C R GLY 211 ? ? 148.75 113.10 35.65 2.50 N 15 1 CB S PHE 210 ? ? CA S PHE 210 ? ? C S PHE 210 ? ? 90.96 110.40 -19.44 2.00 N 16 1 N S PHE 210 ? ? CA S PHE 210 ? ? C S PHE 210 ? ? 89.95 111.00 -21.05 2.70 N 17 1 CB X PHE 216 ? ? CA X PHE 216 ? ? C X PHE 216 ? ? 125.70 110.40 15.30 2.00 N 18 1 CB E ASP 214 ? ? CA E ASP 214 ? ? C E ASP 214 ? ? 93.79 110.40 -16.61 2.00 N 19 1 N E ASN 215 ? ? CA E ASN 215 ? ? CB E ASN 215 ? ? 98.98 110.60 -11.62 1.80 N 20 1 N A GLY 217 ? ? CA A GLY 217 ? ? C A GLY 217 ? ? 89.48 113.10 -23.62 2.50 N 21 1 N N GLY 218 ? ? CA N GLY 218 ? ? C N GLY 218 ? ? 128.66 113.10 15.56 2.50 N 22 1 CB J PHE 216 ? ? CA J PHE 216 ? ? C J PHE 216 ? ? 96.93 110.40 -13.47 2.00 N 23 1 N F GLY 211 ? ? CA F GLY 211 ? ? C F GLY 211 ? ? 95.42 113.10 -17.68 2.50 N 24 1 N F GLY 212 ? ? CA F GLY 212 ? ? C F GLY 212 ? ? 96.86 113.10 -16.24 2.50 N 25 1 CB F ASP 214 ? ? CA F ASP 214 ? ? C F ASP 214 ? ? 97.19 110.40 -13.21 2.00 N 26 1 N F ASN 215 ? ? CA F ASN 215 ? ? CB F ASN 215 ? ? 99.21 110.60 -11.39 1.80 N 27 1 N F ASN 215 ? ? CA F ASN 215 ? ? C F ASN 215 ? ? 83.91 111.00 -27.09 2.70 N 28 1 N F PHE 216 ? ? CA F PHE 216 ? ? C F PHE 216 ? ? 87.66 111.00 -23.34 2.70 N 29 1 N H PHE 210 ? ? CA H PHE 210 ? ? C H PHE 210 ? ? 87.49 111.00 -23.51 2.70 N 30 1 CB H PHE 216 ? ? CA H PHE 216 ? ? C H PHE 216 ? ? 127.82 110.40 17.42 2.00 N 31 1 N H GLY 217 ? ? CA H GLY 217 ? ? C H GLY 217 ? ? 135.58 113.10 22.48 2.50 N 32 1 N W GLY 209 ? ? CA W GLY 209 ? ? C W GLY 209 ? ? 129.35 113.10 16.25 2.50 N 33 1 CB W PHE 210 ? ? CA W PHE 210 ? ? C W PHE 210 ? ? 123.37 110.40 12.97 2.00 N 34 1 N W ASN 213 ? ? CA W ASN 213 ? ? CB W ASN 213 ? ? 87.09 110.60 -23.51 1.80 N 35 1 CB W PHE 216 ? ? CA W PHE 216 ? ? C W PHE 216 ? ? 94.61 110.40 -15.79 2.00 N 36 1 N W PHE 216 ? ? CA W PHE 216 ? ? C W PHE 216 ? ? 93.23 111.00 -17.77 2.70 N 37 1 N Q GLY 211 ? ? CA Q GLY 211 ? ? C Q GLY 211 ? ? 141.77 113.10 28.67 2.50 N 38 1 N Q GLY 212 ? ? CA Q GLY 212 ? ? C Q GLY 212 ? ? 129.88 113.10 16.78 2.50 N 39 1 N T GLY 211 ? ? CA T GLY 211 ? ? C T GLY 211 ? ? 149.35 113.10 36.25 2.50 N 40 1 N T PHE 216 ? ? CA T PHE 216 ? ? C T PHE 216 ? ? 92.70 111.00 -18.30 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE C 216 ? ? 66.55 -56.16 2 1 PHE M 216 ? ? 74.59 -10.52 3 1 ASN R 215 ? ? 61.87 65.85 4 1 PHE N 216 ? ? 58.72 70.76 5 1 ASN N 221 ? ? -92.65 -63.74 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8IK7 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8IK7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.69 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 16505 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'Formed fibrils of hnRNP A1 reversible amyloid core GFGGNDNFG (residues 209-217)' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8IK7 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8IK7 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8IK7 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 GLY N N N N 34 GLY CA C N N 35 GLY C C N N 36 GLY O O N N 37 GLY OXT O N N 38 GLY H H N N 39 GLY H2 H N N 40 GLY HA2 H N N 41 GLY HA3 H N N 42 GLY HXT H N N 43 PHE N N N N 44 PHE CA C N S 45 PHE C C N N 46 PHE O O N N 47 PHE CB C N N 48 PHE CG C Y N 49 PHE CD1 C Y N 50 PHE CD2 C Y N 51 PHE CE1 C Y N 52 PHE CE2 C Y N 53 PHE CZ C Y N 54 PHE OXT O N N 55 PHE H H N N 56 PHE H2 H N N 57 PHE HA H N N 58 PHE HB2 H N N 59 PHE HB3 H N N 60 PHE HD1 H N N 61 PHE HD2 H N N 62 PHE HE1 H N N 63 PHE HE2 H N N 64 PHE HZ H N N 65 PHE HXT H N N 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 PHE N CA sing N N 41 PHE N H sing N N 42 PHE N H2 sing N N 43 PHE CA C sing N N 44 PHE CA CB sing N N 45 PHE CA HA sing N N 46 PHE C O doub N N 47 PHE C OXT sing N N 48 PHE CB CG sing N N 49 PHE CB HB2 sing N N 50 PHE CB HB3 sing N N 51 PHE CG CD1 doub Y N 52 PHE CG CD2 sing Y N 53 PHE CD1 CE1 sing Y N 54 PHE CD1 HD1 sing N N 55 PHE CD2 CE2 doub Y N 56 PHE CD2 HD2 sing N N 57 PHE CE1 CZ doub Y N 58 PHE CE1 HE1 sing N N 59 PHE CE2 CZ sing Y N 60 PHE CE2 HE2 sing N N 61 PHE CZ HZ sing N N 62 PHE OXT HXT sing N N 63 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -1.09 _em_helical_entity.axial_rise_per_subunit 4.81 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8IK7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_