data_8IKP # _entry.id 8IKP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8IKP pdb_00008ikp 10.2210/pdb8ikp/pdb WWPDB D_1300035896 ? ? EMDB EMD-35519 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8IKP _pdbx_database_status.recvd_initial_deposition_date 2023-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of hnRAC1-8I fibril' _pdbx_database_related.db_id EMD-35519 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dannielee@sjtu.edu.cn _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, D.N.' 1 ? 'Ma, Y.Y.' 2 ? 'Li, D.' 3 ? 'Dai, B.' 4 ? 'Liu, C.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structure of hnRAC1-8I fibril' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.N.' 1 ? primary 'Ma, Y.Y.' 2 ? primary 'Li, D.' 3 ? primary 'Dai, B.' 4 ? primary 'Liu, C.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description GLY-PHE-GLY-GLY-ASN-ASP-ASN-PHI-GLY _entity.formula_weight 1009.760 _entity.pdbx_number_of_molecules 32 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GFGGNDN(PHI)G' _entity_poly.pdbx_seq_one_letter_code_can GFGGNDNFG _entity_poly.pdbx_strand_id c,A,B,C,D,E,F,G,a,I,L,O,R,U,X,H,b,J,M,P,S,V,Y,e,d,K,N,Q,T,W,Z,f _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PHE n 1 3 GLY n 1 4 GLY n 1 5 ASN n 1 6 ASP n 1 7 ASN n 1 8 PHI n 1 9 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PHI 'L-peptide linking' n IODO-PHENYLALANINE ? 'C9 H10 I N O2' 291.086 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 209 209 GLY GLY c . n A 1 2 PHE 2 210 210 PHE PHE c . n A 1 3 GLY 3 211 211 GLY GLY c . n A 1 4 GLY 4 212 212 GLY GLY c . n A 1 5 ASN 5 213 213 ASN ASN c . n A 1 6 ASP 6 214 214 ASP ASP c . n A 1 7 ASN 7 215 215 ASN ASN c . n A 1 8 PHI 8 216 216 PHI PHI c . n A 1 9 GLY 9 217 217 GLY GLY c . n B 1 1 GLY 1 209 209 GLY GLY A . n B 1 2 PHE 2 210 210 PHE PHE A . n B 1 3 GLY 3 211 211 GLY GLY A . n B 1 4 GLY 4 212 212 GLY GLY A . n B 1 5 ASN 5 213 213 ASN ASN A . n B 1 6 ASP 6 214 214 ASP ASP A . n B 1 7 ASN 7 215 215 ASN ASN A . n B 1 8 PHI 8 216 216 PHI PHI A . n B 1 9 GLY 9 217 217 GLY GLY A . n C 1 1 GLY 1 209 209 GLY GLY B . n C 1 2 PHE 2 210 210 PHE PHE B . n C 1 3 GLY 3 211 211 GLY GLY B . n C 1 4 GLY 4 212 212 GLY GLY B . n C 1 5 ASN 5 213 213 ASN ASN B . n C 1 6 ASP 6 214 214 ASP ASP B . n C 1 7 ASN 7 215 215 ASN ASN B . n C 1 8 PHI 8 216 216 PHI PHI B . n C 1 9 GLY 9 217 217 GLY GLY B . n D 1 1 GLY 1 209 209 GLY GLY C . n D 1 2 PHE 2 210 210 PHE PHE C . n D 1 3 GLY 3 211 211 GLY GLY C . n D 1 4 GLY 4 212 212 GLY GLY C . n D 1 5 ASN 5 213 213 ASN ASN C . n D 1 6 ASP 6 214 214 ASP ASP C . n D 1 7 ASN 7 215 215 ASN ASN C . n D 1 8 PHI 8 216 216 PHI PHI C . n D 1 9 GLY 9 217 217 GLY GLY C . n E 1 1 GLY 1 209 209 GLY GLY D . n E 1 2 PHE 2 210 210 PHE PHE D . n E 1 3 GLY 3 211 211 GLY GLY D . n E 1 4 GLY 4 212 212 GLY GLY D . n E 1 5 ASN 5 213 213 ASN ASN D . n E 1 6 ASP 6 214 214 ASP ASP D . n E 1 7 ASN 7 215 215 ASN ASN D . n E 1 8 PHI 8 216 216 PHI PHI D . n E 1 9 GLY 9 217 217 GLY GLY D . n F 1 1 GLY 1 209 209 GLY GLY E . n F 1 2 PHE 2 210 210 PHE PHE E . n F 1 3 GLY 3 211 211 GLY GLY E . n F 1 4 GLY 4 212 212 GLY GLY E . n F 1 5 ASN 5 213 213 ASN ASN E . n F 1 6 ASP 6 214 214 ASP ASP E . n F 1 7 ASN 7 215 215 ASN ASN E . n F 1 8 PHI 8 216 216 PHI PHI E . n F 1 9 GLY 9 217 217 GLY GLY E . n G 1 1 GLY 1 209 209 GLY GLY F . n G 1 2 PHE 2 210 210 PHE PHE F . n G 1 3 GLY 3 211 211 GLY GLY F . n G 1 4 GLY 4 212 212 GLY GLY F . n G 1 5 ASN 5 213 213 ASN ASN F . n G 1 6 ASP 6 214 214 ASP ASP F . n G 1 7 ASN 7 215 215 ASN ASN F . n G 1 8 PHI 8 216 216 PHI PHI F . n G 1 9 GLY 9 217 217 GLY GLY F . n H 1 1 GLY 1 209 209 GLY GLY G . n H 1 2 PHE 2 210 210 PHE PHE G . n H 1 3 GLY 3 211 211 GLY GLY G . n H 1 4 GLY 4 212 212 GLY GLY G . n H 1 5 ASN 5 213 213 ASN ASN G . n H 1 6 ASP 6 214 214 ASP ASP G . n H 1 7 ASN 7 215 215 ASN ASN G . n H 1 8 PHI 8 216 216 PHI PHI G . n H 1 9 GLY 9 217 217 GLY GLY G . n I 1 1 GLY 1 209 209 GLY GLY a . n I 1 2 PHE 2 210 210 PHE PHE a . n I 1 3 GLY 3 211 211 GLY GLY a . n I 1 4 GLY 4 212 212 GLY GLY a . n I 1 5 ASN 5 213 213 ASN ASN a . n I 1 6 ASP 6 214 214 ASP ASP a . n I 1 7 ASN 7 215 215 ASN ASN a . n I 1 8 PHI 8 216 216 PHI PHI a . n I 1 9 GLY 9 217 217 GLY GLY a . n J 1 1 GLY 1 209 209 GLY GLY I . n J 1 2 PHE 2 210 210 PHE PHE I . n J 1 3 GLY 3 211 211 GLY GLY I . n J 1 4 GLY 4 212 212 GLY GLY I . n J 1 5 ASN 5 213 213 ASN ASN I . n J 1 6 ASP 6 214 214 ASP ASP I . n J 1 7 ASN 7 215 215 ASN ASN I . n J 1 8 PHI 8 216 216 PHI PHI I . n J 1 9 GLY 9 217 217 GLY GLY I . n K 1 1 GLY 1 209 209 GLY GLY L . n K 1 2 PHE 2 210 210 PHE PHE L . n K 1 3 GLY 3 211 211 GLY GLY L . n K 1 4 GLY 4 212 212 GLY GLY L . n K 1 5 ASN 5 213 213 ASN ASN L . n K 1 6 ASP 6 214 214 ASP ASP L . n K 1 7 ASN 7 215 215 ASN ASN L . n K 1 8 PHI 8 216 216 PHI PHI L . n K 1 9 GLY 9 217 217 GLY GLY L . n L 1 1 GLY 1 209 209 GLY GLY O . n L 1 2 PHE 2 210 210 PHE PHE O . n L 1 3 GLY 3 211 211 GLY GLY O . n L 1 4 GLY 4 212 212 GLY GLY O . n L 1 5 ASN 5 213 213 ASN ASN O . n L 1 6 ASP 6 214 214 ASP ASP O . n L 1 7 ASN 7 215 215 ASN ASN O . n L 1 8 PHI 8 216 216 PHI PHI O . n L 1 9 GLY 9 217 217 GLY GLY O . n M 1 1 GLY 1 209 209 GLY GLY R . n M 1 2 PHE 2 210 210 PHE PHE R . n M 1 3 GLY 3 211 211 GLY GLY R . n M 1 4 GLY 4 212 212 GLY GLY R . n M 1 5 ASN 5 213 213 ASN ASN R . n M 1 6 ASP 6 214 214 ASP ASP R . n M 1 7 ASN 7 215 215 ASN ASN R . n M 1 8 PHI 8 216 216 PHI PHI R . n M 1 9 GLY 9 217 217 GLY GLY R . n N 1 1 GLY 1 209 209 GLY GLY U . n N 1 2 PHE 2 210 210 PHE PHE U . n N 1 3 GLY 3 211 211 GLY GLY U . n N 1 4 GLY 4 212 212 GLY GLY U . n N 1 5 ASN 5 213 213 ASN ASN U . n N 1 6 ASP 6 214 214 ASP ASP U . n N 1 7 ASN 7 215 215 ASN ASN U . n N 1 8 PHI 8 216 216 PHI PHI U . n N 1 9 GLY 9 217 217 GLY GLY U . n O 1 1 GLY 1 209 209 GLY GLY X . n O 1 2 PHE 2 210 210 PHE PHE X . n O 1 3 GLY 3 211 211 GLY GLY X . n O 1 4 GLY 4 212 212 GLY GLY X . n O 1 5 ASN 5 213 213 ASN ASN X . n O 1 6 ASP 6 214 214 ASP ASP X . n O 1 7 ASN 7 215 215 ASN ASN X . n O 1 8 PHI 8 216 216 PHI PHI X . n O 1 9 GLY 9 217 217 GLY GLY X . n P 1 1 GLY 1 209 209 GLY GLY H . n P 1 2 PHE 2 210 210 PHE PHE H . n P 1 3 GLY 3 211 211 GLY GLY H . n P 1 4 GLY 4 212 212 GLY GLY H . n P 1 5 ASN 5 213 213 ASN ASN H . n P 1 6 ASP 6 214 214 ASP ASP H . n P 1 7 ASN 7 215 215 ASN ASN H . n P 1 8 PHI 8 216 216 PHI PHI H . n P 1 9 GLY 9 217 217 GLY GLY H . n Q 1 1 GLY 1 209 209 GLY GLY b . n Q 1 2 PHE 2 210 210 PHE PHE b . n Q 1 3 GLY 3 211 211 GLY GLY b . n Q 1 4 GLY 4 212 212 GLY GLY b . n Q 1 5 ASN 5 213 213 ASN ASN b . n Q 1 6 ASP 6 214 214 ASP ASP b . n Q 1 7 ASN 7 215 215 ASN ASN b . n Q 1 8 PHI 8 216 216 PHI PHI b . n Q 1 9 GLY 9 217 217 GLY GLY b . n R 1 1 GLY 1 209 209 GLY GLY J . n R 1 2 PHE 2 210 210 PHE PHE J . n R 1 3 GLY 3 211 211 GLY GLY J . n R 1 4 GLY 4 212 212 GLY GLY J . n R 1 5 ASN 5 213 213 ASN ASN J . n R 1 6 ASP 6 214 214 ASP ASP J . n R 1 7 ASN 7 215 215 ASN ASN J . n R 1 8 PHI 8 216 216 PHI PHI J . n R 1 9 GLY 9 217 217 GLY GLY J . n S 1 1 GLY 1 209 209 GLY GLY M . n S 1 2 PHE 2 210 210 PHE PHE M . n S 1 3 GLY 3 211 211 GLY GLY M . n S 1 4 GLY 4 212 212 GLY GLY M . n S 1 5 ASN 5 213 213 ASN ASN M . n S 1 6 ASP 6 214 214 ASP ASP M . n S 1 7 ASN 7 215 215 ASN ASN M . n S 1 8 PHI 8 216 216 PHI PHI M . n S 1 9 GLY 9 217 217 GLY GLY M . n T 1 1 GLY 1 209 209 GLY GLY P . n T 1 2 PHE 2 210 210 PHE PHE P . n T 1 3 GLY 3 211 211 GLY GLY P . n T 1 4 GLY 4 212 212 GLY GLY P . n T 1 5 ASN 5 213 213 ASN ASN P . n T 1 6 ASP 6 214 214 ASP ASP P . n T 1 7 ASN 7 215 215 ASN ASN P . n T 1 8 PHI 8 216 216 PHI PHI P . n T 1 9 GLY 9 217 217 GLY GLY P . n U 1 1 GLY 1 209 209 GLY GLY S . n U 1 2 PHE 2 210 210 PHE PHE S . n U 1 3 GLY 3 211 211 GLY GLY S . n U 1 4 GLY 4 212 212 GLY GLY S . n U 1 5 ASN 5 213 213 ASN ASN S . n U 1 6 ASP 6 214 214 ASP ASP S . n U 1 7 ASN 7 215 215 ASN ASN S . n U 1 8 PHI 8 216 216 PHI PHI S . n U 1 9 GLY 9 217 217 GLY GLY S . n V 1 1 GLY 1 209 209 GLY GLY V . n V 1 2 PHE 2 210 210 PHE PHE V . n V 1 3 GLY 3 211 211 GLY GLY V . n V 1 4 GLY 4 212 212 GLY GLY V . n V 1 5 ASN 5 213 213 ASN ASN V . n V 1 6 ASP 6 214 214 ASP ASP V . n V 1 7 ASN 7 215 215 ASN ASN V . n V 1 8 PHI 8 216 216 PHI PHI V . n V 1 9 GLY 9 217 217 GLY GLY V . n W 1 1 GLY 1 209 209 GLY GLY Y . n W 1 2 PHE 2 210 210 PHE PHE Y . n W 1 3 GLY 3 211 211 GLY GLY Y . n W 1 4 GLY 4 212 212 GLY GLY Y . n W 1 5 ASN 5 213 213 ASN ASN Y . n W 1 6 ASP 6 214 214 ASP ASP Y . n W 1 7 ASN 7 215 215 ASN ASN Y . n W 1 8 PHI 8 216 216 PHI PHI Y . n W 1 9 GLY 9 217 217 GLY GLY Y . n X 1 1 GLY 1 209 209 GLY GLY e . n X 1 2 PHE 2 210 210 PHE PHE e . n X 1 3 GLY 3 211 211 GLY GLY e . n X 1 4 GLY 4 212 212 GLY GLY e . n X 1 5 ASN 5 213 213 ASN ASN e . n X 1 6 ASP 6 214 214 ASP ASP e . n X 1 7 ASN 7 215 215 ASN ASN e . n X 1 8 PHI 8 216 216 PHI PHI e . n X 1 9 GLY 9 217 217 GLY GLY e . n Y 1 1 GLY 1 209 209 GLY GLY d . n Y 1 2 PHE 2 210 210 PHE PHE d . n Y 1 3 GLY 3 211 211 GLY GLY d . n Y 1 4 GLY 4 212 212 GLY GLY d . n Y 1 5 ASN 5 213 213 ASN ASN d . n Y 1 6 ASP 6 214 214 ASP ASP d . n Y 1 7 ASN 7 215 215 ASN ASN d . n Y 1 8 PHI 8 216 216 PHI PHI d . n Y 1 9 GLY 9 217 217 GLY GLY d . n Z 1 1 GLY 1 209 209 GLY GLY K . n Z 1 2 PHE 2 210 210 PHE PHE K . n Z 1 3 GLY 3 211 211 GLY GLY K . n Z 1 4 GLY 4 212 212 GLY GLY K . n Z 1 5 ASN 5 213 213 ASN ASN K . n Z 1 6 ASP 6 214 214 ASP ASP K . n Z 1 7 ASN 7 215 215 ASN ASN K . n Z 1 8 PHI 8 216 216 PHI PHI K . n Z 1 9 GLY 9 217 217 GLY GLY K . n AA 1 1 GLY 1 209 209 GLY GLY N . n AA 1 2 PHE 2 210 210 PHE PHE N . n AA 1 3 GLY 3 211 211 GLY GLY N . n AA 1 4 GLY 4 212 212 GLY GLY N . n AA 1 5 ASN 5 213 213 ASN ASN N . n AA 1 6 ASP 6 214 214 ASP ASP N . n AA 1 7 ASN 7 215 215 ASN ASN N . n AA 1 8 PHI 8 216 216 PHI PHI N . n AA 1 9 GLY 9 217 217 GLY GLY N . n BA 1 1 GLY 1 209 209 GLY GLY Q . n BA 1 2 PHE 2 210 210 PHE PHE Q . n BA 1 3 GLY 3 211 211 GLY GLY Q . n BA 1 4 GLY 4 212 212 GLY GLY Q . n BA 1 5 ASN 5 213 213 ASN ASN Q . n BA 1 6 ASP 6 214 214 ASP ASP Q . n BA 1 7 ASN 7 215 215 ASN ASN Q . n BA 1 8 PHI 8 216 216 PHI PHI Q . n BA 1 9 GLY 9 217 217 GLY GLY Q . n CA 1 1 GLY 1 209 209 GLY GLY T . n CA 1 2 PHE 2 210 210 PHE PHE T . n CA 1 3 GLY 3 211 211 GLY GLY T . n CA 1 4 GLY 4 212 212 GLY GLY T . n CA 1 5 ASN 5 213 213 ASN ASN T . n CA 1 6 ASP 6 214 214 ASP ASP T . n CA 1 7 ASN 7 215 215 ASN ASN T . n CA 1 8 PHI 8 216 216 PHI PHI T . n CA 1 9 GLY 9 217 217 GLY GLY T . n DA 1 1 GLY 1 209 209 GLY GLY W . n DA 1 2 PHE 2 210 210 PHE PHE W . n DA 1 3 GLY 3 211 211 GLY GLY W . n DA 1 4 GLY 4 212 212 GLY GLY W . n DA 1 5 ASN 5 213 213 ASN ASN W . n DA 1 6 ASP 6 214 214 ASP ASP W . n DA 1 7 ASN 7 215 215 ASN ASN W . n DA 1 8 PHI 8 216 216 PHI PHI W . n DA 1 9 GLY 9 217 217 GLY GLY W . n EA 1 1 GLY 1 209 209 GLY GLY Z . n EA 1 2 PHE 2 210 210 PHE PHE Z . n EA 1 3 GLY 3 211 211 GLY GLY Z . n EA 1 4 GLY 4 212 212 GLY GLY Z . n EA 1 5 ASN 5 213 213 ASN ASN Z . n EA 1 6 ASP 6 214 214 ASP ASP Z . n EA 1 7 ASN 7 215 215 ASN ASN Z . n EA 1 8 PHI 8 216 216 PHI PHI Z . n EA 1 9 GLY 9 217 217 GLY GLY Z . n FA 1 1 GLY 1 209 209 GLY GLY f . n FA 1 2 PHE 2 210 210 PHE PHE f . n FA 1 3 GLY 3 211 211 GLY GLY f . n FA 1 4 GLY 4 212 212 GLY GLY f . n FA 1 5 ASN 5 213 213 ASN ASN f . n FA 1 6 ASP 6 214 214 ASP ASP f . n FA 1 7 ASN 7 215 215 ASN ASN f . n FA 1 8 PHI 8 216 216 PHI PHI f . n FA 1 9 GLY 9 217 217 GLY GLY f . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8IKP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8IKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8IKP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8IKP _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 2080 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.505 ? 2752 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 11.811 ? 896 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.052 ? 160 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 448 ? f_plane_restr ? ? # _struct.entry_id 8IKP _struct.title 'Cryo-EM structure of hnRAC1-8I fibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8IKP _struct_keywords.text 'irreversible peptide fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? S N N 1 ? T N N 1 ? U N N 1 ? V N N 1 ? W N N 1 ? X N N 1 ? Y N N 1 ? Z N N 1 ? AA N N 1 ? BA N N 1 ? CA N N 1 ? DA N N 1 ? EA N N 1 ? FA N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8IKP _struct_ref.pdbx_db_accession 8IKP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8IKP c 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 2 1 8IKP A 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 3 1 8IKP B 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 4 1 8IKP C 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 5 1 8IKP D 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 6 1 8IKP E 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 7 1 8IKP F 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 8 1 8IKP G 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 9 1 8IKP a 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 10 1 8IKP I 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 11 1 8IKP L 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 12 1 8IKP O 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 13 1 8IKP R 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 14 1 8IKP U 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 15 1 8IKP X 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 16 1 8IKP H 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 17 1 8IKP b 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 18 1 8IKP J 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 19 1 8IKP M 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 20 1 8IKP P 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 21 1 8IKP S 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 22 1 8IKP V 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 23 1 8IKP Y 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 24 1 8IKP e 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 25 1 8IKP d 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 26 1 8IKP K 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 27 1 8IKP N 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 28 1 8IKP Q 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 29 1 8IKP T 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 30 1 8IKP W 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 31 1 8IKP Z 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 32 1 8IKP f 1 ? 9 ? 8IKP 209 ? 217 ? 209 217 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 32-meric _pdbx_struct_assembly.oligomeric_count 32 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 7 C ? ? ? 1_555 A PHI 8 N ? ? c ASN 215 c PHI 216 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A PHI 8 C ? ? ? 1_555 A GLY 9 N ? ? c PHI 216 c GLY 217 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? B ASN 7 C ? ? ? 1_555 B PHI 8 N ? ? A ASN 215 A PHI 216 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? B PHI 8 C ? ? ? 1_555 B GLY 9 N ? ? A PHI 216 A GLY 217 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? C ASN 7 C ? ? ? 1_555 C PHI 8 N ? ? B ASN 215 B PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? C PHI 8 C ? ? ? 1_555 C GLY 9 N ? ? B PHI 216 B GLY 217 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? D ASN 7 C ? ? ? 1_555 D PHI 8 N ? ? C ASN 215 C PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? D PHI 8 C ? ? ? 1_555 D GLY 9 N ? ? C PHI 216 C GLY 217 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? E ASN 7 C ? ? ? 1_555 E PHI 8 N ? ? D ASN 215 D PHI 216 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? E PHI 8 C ? ? ? 1_555 E GLY 9 N ? ? D PHI 216 D GLY 217 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? F ASN 7 C ? ? ? 1_555 F PHI 8 N ? ? E ASN 215 E PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale12 covale both ? F PHI 8 C ? ? ? 1_555 F GLY 9 N ? ? E PHI 216 E GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? G ASN 7 C ? ? ? 1_555 G PHI 8 N ? ? F ASN 215 F PHI 216 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? G PHI 8 C ? ? ? 1_555 G GLY 9 N ? ? F PHI 216 F GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? H ASN 7 C ? ? ? 1_555 H PHI 8 N ? ? G ASN 215 G PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale16 covale both ? H PHI 8 C ? ? ? 1_555 H GLY 9 N ? ? G PHI 216 G GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale17 covale both ? I ASN 7 C ? ? ? 1_555 I PHI 8 N ? ? a ASN 215 a PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale18 covale both ? I PHI 8 C ? ? ? 1_555 I GLY 9 N ? ? a PHI 216 a GLY 217 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale19 covale both ? J ASN 7 C ? ? ? 1_555 J PHI 8 N ? ? I ASN 215 I PHI 216 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale20 covale both ? J PHI 8 C ? ? ? 1_555 J GLY 9 N ? ? I PHI 216 I GLY 217 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale21 covale both ? K ASN 7 C ? ? ? 1_555 K PHI 8 N ? ? L ASN 215 L PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale22 covale both ? K PHI 8 C ? ? ? 1_555 K GLY 9 N ? ? L PHI 216 L GLY 217 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale23 covale both ? L ASN 7 C ? ? ? 1_555 L PHI 8 N ? ? O ASN 215 O PHI 216 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale24 covale both ? L PHI 8 C ? ? ? 1_555 L GLY 9 N ? ? O PHI 216 O GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale25 covale both ? M ASN 7 C ? ? ? 1_555 M PHI 8 N ? ? R ASN 215 R PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale26 covale both ? M PHI 8 C ? ? ? 1_555 M GLY 9 N ? ? R PHI 216 R GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale27 covale both ? N ASN 7 C ? ? ? 1_555 N PHI 8 N ? ? U ASN 215 U PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale28 covale both ? N PHI 8 C ? ? ? 1_555 N GLY 9 N ? ? U PHI 216 U GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale29 covale both ? O ASN 7 C ? ? ? 1_555 O PHI 8 N ? ? X ASN 215 X PHI 216 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale30 covale both ? O PHI 8 C ? ? ? 1_555 O GLY 9 N ? ? X PHI 216 X GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale31 covale both ? P ASN 7 C ? ? ? 1_555 P PHI 8 N ? ? H ASN 215 H PHI 216 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale32 covale both ? P PHI 8 C ? ? ? 1_555 P GLY 9 N ? ? H PHI 216 H GLY 217 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale33 covale both ? Q ASN 7 C ? ? ? 1_555 Q PHI 8 N ? ? b ASN 215 b PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale34 covale both ? Q PHI 8 C ? ? ? 1_555 Q GLY 9 N ? ? b PHI 216 b GLY 217 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale35 covale both ? R ASN 7 C ? ? ? 1_555 R PHI 8 N ? ? J ASN 215 J PHI 216 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale36 covale both ? R PHI 8 C ? ? ? 1_555 R GLY 9 N ? ? J PHI 216 J GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale37 covale both ? S ASN 7 C ? ? ? 1_555 S PHI 8 N ? ? M ASN 215 M PHI 216 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale38 covale both ? S PHI 8 C ? ? ? 1_555 S GLY 9 N ? ? M PHI 216 M GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale39 covale both ? T ASN 7 C ? ? ? 1_555 T PHI 8 N ? ? P ASN 215 P PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale40 covale both ? T PHI 8 C ? ? ? 1_555 T GLY 9 N ? ? P PHI 216 P GLY 217 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale41 covale both ? U ASN 7 C ? ? ? 1_555 U PHI 8 N ? ? S ASN 215 S PHI 216 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale42 covale both ? U PHI 8 C ? ? ? 1_555 U GLY 9 N ? ? S PHI 216 S GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale43 covale both ? V ASN 7 C ? ? ? 1_555 V PHI 8 N ? ? V ASN 215 V PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale44 covale both ? V PHI 8 C ? ? ? 1_555 V GLY 9 N ? ? V PHI 216 V GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale45 covale both ? W ASN 7 C ? ? ? 1_555 W PHI 8 N ? ? Y ASN 215 Y PHI 216 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale46 covale both ? W PHI 8 C ? ? ? 1_555 W GLY 9 N ? ? Y PHI 216 Y GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale47 covale both ? X ASN 7 C ? ? ? 1_555 X PHI 8 N ? ? e ASN 215 e PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale48 covale both ? X PHI 8 C ? ? ? 1_555 X GLY 9 N ? ? e PHI 216 e GLY 217 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale49 covale both ? Y ASN 7 C ? ? ? 1_555 Y PHI 8 N ? ? d ASN 215 d PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale50 covale both ? Y PHI 8 C ? ? ? 1_555 Y GLY 9 N ? ? d PHI 216 d GLY 217 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale51 covale both ? Z ASN 7 C ? ? ? 1_555 Z PHI 8 N ? ? K ASN 215 K PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale52 covale both ? Z PHI 8 C ? ? ? 1_555 Z GLY 9 N ? ? K PHI 216 K GLY 217 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale53 covale both ? AA ASN 7 C ? ? ? 1_555 AA PHI 8 N ? ? N ASN 215 N PHI 216 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale54 covale both ? AA PHI 8 C ? ? ? 1_555 AA GLY 9 N ? ? N PHI 216 N GLY 217 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale55 covale both ? BA ASN 7 C ? ? ? 1_555 BA PHI 8 N ? ? Q ASN 215 Q PHI 216 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale56 covale both ? BA PHI 8 C ? ? ? 1_555 BA GLY 9 N ? ? Q PHI 216 Q GLY 217 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale57 covale both ? CA ASN 7 C ? ? ? 1_555 CA PHI 8 N ? ? T ASN 215 T PHI 216 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale58 covale both ? CA PHI 8 C ? ? ? 1_555 CA GLY 9 N ? ? T PHI 216 T GLY 217 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale59 covale both ? DA ASN 7 C ? ? ? 1_555 DA PHI 8 N ? ? W ASN 215 W PHI 216 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale60 covale both ? DA PHI 8 C ? ? ? 1_555 DA GLY 9 N ? ? W PHI 216 W GLY 217 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale61 covale both ? EA ASN 7 C ? ? ? 1_555 EA PHI 8 N ? ? Z ASN 215 Z PHI 216 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale62 covale both ? EA PHI 8 C ? ? ? 1_555 EA GLY 9 N ? ? Z PHI 216 Z GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale63 covale both ? FA ASN 7 C ? ? ? 1_555 FA PHI 8 N ? ? f ASN 215 f PHI 216 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale64 covale both ? FA PHI 8 C ? ? ? 1_555 FA GLY 9 N ? ? f PHI 216 f GLY 217 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N X GLY 211 ? ? CA X GLY 211 ? ? C X GLY 211 ? ? 89.63 113.10 -23.47 2.50 N 2 1 N X GLY 212 ? ? CA X GLY 212 ? ? C X GLY 212 ? ? 130.90 113.10 17.80 2.50 N 3 1 N X ASN 213 ? ? CA X ASN 213 ? ? C X ASN 213 ? ? 90.38 111.00 -20.62 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN E 213 ? ? -79.21 49.21 2 1 ASN b 215 ? ? -110.67 79.93 3 1 ASN Y 215 ? ? -150.55 50.92 4 1 PHI Q 216 ? ? -115.97 61.92 5 1 ASN T 215 ? ? -148.67 57.91 6 1 ASN Z 213 ? ? -108.91 79.97 7 1 ASN f 215 ? ? -110.14 78.94 # _pdbx_entry_details.entry_id 8IKP _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8IKP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8IKP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.98 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 10265 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'Cryo-EM structure of hnRAC1-8I fibril' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8IKP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8IKP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8IKP _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 GLY N N N N 34 GLY CA C N N 35 GLY C C N N 36 GLY O O N N 37 GLY OXT O N N 38 GLY H H N N 39 GLY H2 H N N 40 GLY HA2 H N N 41 GLY HA3 H N N 42 GLY HXT H N N 43 PHE N N N N 44 PHE CA C N S 45 PHE C C N N 46 PHE O O N N 47 PHE CB C N N 48 PHE CG C Y N 49 PHE CD1 C Y N 50 PHE CD2 C Y N 51 PHE CE1 C Y N 52 PHE CE2 C Y N 53 PHE CZ C Y N 54 PHE OXT O N N 55 PHE H H N N 56 PHE H2 H N N 57 PHE HA H N N 58 PHE HB2 H N N 59 PHE HB3 H N N 60 PHE HD1 H N N 61 PHE HD2 H N N 62 PHE HE1 H N N 63 PHE HE2 H N N 64 PHE HZ H N N 65 PHE HXT H N N 66 PHI N N N N 67 PHI CA C N S 68 PHI CB C N N 69 PHI CG C Y N 70 PHI CD1 C Y N 71 PHI CD2 C Y N 72 PHI CE1 C Y N 73 PHI CE2 C Y N 74 PHI CZ C Y N 75 PHI I I N N 76 PHI C C N N 77 PHI O O N N 78 PHI OXT O N N 79 PHI H H N N 80 PHI H2 H N N 81 PHI HA H N N 82 PHI HB2 H N N 83 PHI HB3 H N N 84 PHI HD1 H N N 85 PHI HD2 H N N 86 PHI HE1 H N N 87 PHI HE2 H N N 88 PHI HXT H N N 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 GLY N CA sing N N 32 GLY N H sing N N 33 GLY N H2 sing N N 34 GLY CA C sing N N 35 GLY CA HA2 sing N N 36 GLY CA HA3 sing N N 37 GLY C O doub N N 38 GLY C OXT sing N N 39 GLY OXT HXT sing N N 40 PHE N CA sing N N 41 PHE N H sing N N 42 PHE N H2 sing N N 43 PHE CA C sing N N 44 PHE CA CB sing N N 45 PHE CA HA sing N N 46 PHE C O doub N N 47 PHE C OXT sing N N 48 PHE CB CG sing N N 49 PHE CB HB2 sing N N 50 PHE CB HB3 sing N N 51 PHE CG CD1 doub Y N 52 PHE CG CD2 sing Y N 53 PHE CD1 CE1 sing Y N 54 PHE CD1 HD1 sing N N 55 PHE CD2 CE2 doub Y N 56 PHE CD2 HD2 sing N N 57 PHE CE1 CZ doub Y N 58 PHE CE1 HE1 sing N N 59 PHE CE2 CZ sing Y N 60 PHE CE2 HE2 sing N N 61 PHE CZ HZ sing N N 62 PHE OXT HXT sing N N 63 PHI N CA sing N N 64 PHI N H sing N N 65 PHI N H2 sing N N 66 PHI CA CB sing N N 67 PHI CA C sing N N 68 PHI CA HA sing N N 69 PHI CB CG sing N N 70 PHI CB HB2 sing N N 71 PHI CB HB3 sing N N 72 PHI CG CD1 doub Y N 73 PHI CG CD2 sing Y N 74 PHI CD1 CE1 sing Y N 75 PHI CD1 HD1 sing N N 76 PHI CD2 CE2 doub Y N 77 PHI CD2 HD2 sing N N 78 PHI CE1 CZ doub Y N 79 PHI CE1 HE1 sing N N 80 PHI CE2 CZ sing Y N 81 PHI CE2 HE2 sing N N 82 PHI CZ I sing N N 83 PHI C O doub N N 84 PHI C OXT sing N N 85 PHI OXT HXT sing N N 86 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -1.06 _em_helical_entity.axial_rise_per_subunit 4.82 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PHI _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PHI _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8IKP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C I N O # loop_