HEADER PROTEIN BINDING 07-MAR-23 8IMQ TITLE ADAPTIVE MUTATION IS MEDIATED BY MSYB VIA ITS INTERACTION WITH TITLE 2 NUCLEOID-ASSOCIATED PROTEINS HU AND BETA-CLAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACIDIC PROTEIN MSYB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: ECS1429; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS HU, BETA-CLAMP, ADAPTIVE MUTATION, STATIONARY PHASE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.LIU,H.CHEN REVDAT 2 15-MAY-24 8IMQ 1 REMARK REVDAT 1 13-MAR-24 8IMQ 0 JRNL AUTH B.LIU,H.CHEN JRNL TITL ADAPTIVE MUTATION IS MEDIATED BY MSYB VIA ITS INTERACTION JRNL TITL 2 WITH NUCLEOID-ASSOCIATED PROTEINS HU AND BETA-CLAMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1300036078. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 400 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 400 MM NON SODIUM CHLORIDE, 100 REMARK 210 NM NON SODIUM PHOSPHATE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 110 H THR A 111 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 79.66 -106.97 REMARK 500 1 ASN A 22 87.75 -164.59 REMARK 500 1 ASP A 26 -161.22 -61.45 REMARK 500 1 GLN A 34 146.28 -172.81 REMARK 500 1 LEU A 42 -179.10 -65.23 REMARK 500 1 ASP A 46 85.13 18.15 REMARK 500 1 ILE A 47 95.89 -61.70 REMARK 500 1 GLU A 59 -155.96 -71.84 REMARK 500 1 GLU A 62 44.47 -78.24 REMARK 500 1 GLU A 100 46.89 -83.28 REMARK 500 1 GLU A 106 172.85 -57.01 REMARK 500 1 PRO A 107 168.41 -47.35 REMARK 500 1 PRO A 108 160.74 -38.15 REMARK 500 1 ASP A 110 -81.02 -122.16 REMARK 500 1 THR A 111 -22.07 -179.45 REMARK 500 1 ARG A 115 99.59 61.65 REMARK 500 1 ALA A 117 22.81 -144.78 REMARK 500 1 TRP A 121 -166.92 -113.36 REMARK 500 2 TYR A 4 -150.61 -103.20 REMARK 500 2 THR A 6 -179.50 -176.35 REMARK 500 2 ASN A 22 79.35 -165.32 REMARK 500 2 ASP A 26 -165.54 -56.65 REMARK 500 2 ALA A 27 -7.30 -57.33 REMARK 500 2 GLN A 34 146.78 -173.57 REMARK 500 2 GLU A 59 -158.62 -69.35 REMARK 500 2 PRO A 65 86.87 -69.08 REMARK 500 2 SER A 68 119.96 -161.69 REMARK 500 2 PRO A 108 133.22 -20.98 REMARK 500 2 ASP A 110 -80.04 -150.81 REMARK 500 2 THR A 111 -15.67 -144.05 REMARK 500 2 GLU A 113 31.80 -91.26 REMARK 500 2 ARG A 115 66.71 62.61 REMARK 500 2 ASP A 119 75.47 -118.19 REMARK 500 3 TYR A 4 -107.83 -86.75 REMARK 500 3 ALA A 5 -53.45 -133.73 REMARK 500 3 ASN A 22 77.61 -153.07 REMARK 500 3 ASP A 26 -158.14 -61.39 REMARK 500 3 GLN A 34 146.21 -173.17 REMARK 500 3 ASP A 46 100.15 -50.76 REMARK 500 3 GLU A 59 -155.81 -77.18 REMARK 500 3 PRO A 107 151.97 -48.31 REMARK 500 3 PRO A 108 142.47 -32.60 REMARK 500 3 ASP A 110 -93.36 -137.09 REMARK 500 3 THR A 111 -35.39 -170.93 REMARK 500 3 ARG A 115 118.35 79.02 REMARK 500 3 ALA A 116 -44.69 73.81 REMARK 500 3 ALA A 117 36.16 -81.35 REMARK 500 3 ASP A 119 42.62 -81.73 REMARK 500 4 TYR A 4 -143.20 -95.82 REMARK 500 4 THR A 6 177.63 178.78 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 PHE A 54 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 28093 RELATED DB: BMRB DBREF 8IMQ A 1 124 UNP C3TEI7 C3TEI7_ECOLX 2 125 SEQRES 1 A 124 MET THR MET TYR ALA THR LEU GLU GLU ALA ILE ASP ALA SEQRES 2 A 124 ALA ARG GLU GLU PHE LEU ALA ASP ASN PRO GLY ILE ASP SEQRES 3 A 124 ALA GLU ASP ALA ASN VAL GLN GLN PHE ASN ALA GLN LYS SEQRES 4 A 124 TYR VAL LEU GLN ASP GLY ASP ILE MET TRP GLN VAL GLU SEQRES 5 A 124 PHE PHE ALA ASP GLU GLY GLU GLU GLY GLU CYS LEU PRO SEQRES 6 A 124 MET LEU SER GLY GLU ALA ALA GLN SER VAL PHE ASP GLY SEQRES 7 A 124 ASP TYR ASP GLU ILE GLU ILE ARG GLN GLU TRP GLN GLU SEQRES 8 A 124 GLU ASN THR LEU HIS GLU TRP ASP GLU GLY GLU PHE GLN SEQRES 9 A 124 LEU GLU PRO PRO LEU ASP THR GLU GLU GLY ARG ALA ALA SEQRES 10 A 124 ALA ASP GLU TRP ASP GLU ARG HELIX 1 AA1 THR A 6 ASN A 22 1 17 HELIX 2 AA2 GLY A 69 GLY A 78 1 10 HELIX 3 AA3 ASP A 81 GLU A 88 1 8 SHEET 1 AA1 3 GLN A 50 GLU A 52 0 SHEET 2 AA1 3 ASN A 36 GLN A 38 -1 N ASN A 36 O GLU A 52 SHEET 3 AA1 3 LEU A 64 PRO A 65 -1 O LEU A 64 N ALA A 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1