HEADER VIRAL PROTEIN 03-APR-23 8IY1 TITLE STRUCTURE OF ACB2 COMPLEXED WITH CAAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: P26; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: ACB2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PAP2; SOURCE 3 ORGANISM_TAXID: 270673; SOURCE 4 GENE: ORF26; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-CBASS PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.L.CAO,Y.XIAO,Y.FENG REVDAT 2 13-MAR-24 8IY1 1 REMARK REVDAT 1 07-FEB-24 8IY1 0 JRNL AUTH X.CAO,Y.XIAO,E.HUITING,X.CAO,D.LI,J.REN,I.FEDOROVA,H.WANG, JRNL AUTH 2 L.GUAN,Y.WANG,L.LI,J.BONDY-DENOMY,Y.FENG JRNL TITL PHAGE ANTI-CBASS PROTEIN SIMULTANEOUSLY SEQUESTERS CYCLIC JRNL TITL 2 TRINUCLEOTIDES AND DINUCLEOTIDES. JRNL REF MOL.CELL V. 84 375 2024 JRNL REFN ISSN 1097-2765 JRNL PMID 38103556 JRNL DOI 10.1016/J.MOLCEL.2023.11.026 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20_4459: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 36138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6800 - 4.9400 0.98 2815 147 0.2321 0.2491 REMARK 3 2 4.9400 - 3.9200 0.99 2724 139 0.2010 0.2112 REMARK 3 3 3.9200 - 3.4300 0.99 2700 146 0.2028 0.2139 REMARK 3 4 3.4300 - 3.1100 0.99 2686 140 0.2103 0.2203 REMARK 3 5 3.1100 - 2.8900 0.99 2649 138 0.2316 0.2939 REMARK 3 6 2.8900 - 2.7200 0.98 2655 140 0.2442 0.2981 REMARK 3 7 2.7200 - 2.5800 0.99 2650 137 0.2312 0.2731 REMARK 3 8 2.5800 - 2.4700 0.98 2630 138 0.2271 0.2955 REMARK 3 9 2.4700 - 2.3800 0.98 2621 135 0.2257 0.2607 REMARK 3 10 2.3800 - 2.3000 0.98 2623 143 0.2403 0.2520 REMARK 3 11 2.3000 - 2.2200 0.98 2612 139 0.2374 0.2947 REMARK 3 12 2.2200 - 2.1600 0.95 2513 136 0.2260 0.2755 REMARK 3 13 2.1600 - 2.1000 0.92 2455 127 0.2536 0.2930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.029 4956 REMARK 3 ANGLE : 2.891 6744 REMARK 3 CHIRALITY : 0.105 714 REMARK 3 PLANARITY : 0.024 822 REMARK 3 DIHEDRAL : 31.462 798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8IY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-23. REMARK 100 THE DEPOSITION ID IS D_1300036721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM BROMIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 101.43600 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 101.43600 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 101.43600 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -51.79500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -89.71157 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 51.79500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -89.71157 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -51.79500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -89.71157 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 51.79500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -89.71157 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 211 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 243 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 244 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 247 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 252 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 213 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 236 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 238 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 225 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 242 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 251 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 252 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 220 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 235 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 243 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 244 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 245 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 207 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 213 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 218 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 219 LIES ON A SPECIAL POSITION. REMARK 375 HOH F 209 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP C 2 REMARK 465 ASP D 2 REMARK 465 ASP E 2 REMARK 465 ASP F 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 219 O HOH F 220 1.88 REMARK 500 O HOH B 223 O HOH B 231 2.00 REMARK 500 O HOH C 239 O HOH C 243 2.05 REMARK 500 OD1 ASP C 20 O HOH C 201 2.05 REMARK 500 OE2 GLU C 17 O HOH C 202 2.11 REMARK 500 O2' 3GP B 103 O HOH B 201 2.14 REMARK 500 O HOH B 226 O HOH B 228 2.15 REMARK 500 O2P 3GP B 103 O HOH B 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 238 O HOH A 250 5556 2.05 REMARK 500 O HOH C 223 O HOH D 224 3545 2.06 REMARK 500 O HOH A 235 O HOH A 237 5556 2.16 REMARK 500 O HOH A 222 O HOH A 223 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 6 -31.89 147.74 REMARK 500 HIS D 52 -7.00 80.88 REMARK 500 HIS E 52 -4.52 76.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 252 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH D 245 DISTANCE = 6.83 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 3AM A 101 REMARK 610 3AM A 102 REMARK 610 3GP A 103 REMARK 610 3AM B 101 REMARK 610 3AM B 102 REMARK 610 3GP B 103 REMARK 610 3AM C 101 REMARK 610 3AM C 102 REMARK 610 3GP C 103 REMARK 610 3AM D 101 REMARK 610 3AM D 102 REMARK 610 3GP D 103 REMARK 610 3AM E 101 REMARK 610 3AM E 102 REMARK 610 3GP E 103 REMARK 610 3AM F 101 REMARK 610 3AM F 102 REMARK 610 3GP F 103 DBREF 8IY1 A 2 93 UNP Q6PVL0 Q6PVL0_9CAUD 2 93 DBREF 8IY1 B 2 93 UNP Q6PVL0 Q6PVL0_9CAUD 2 93 DBREF 8IY1 C 2 93 UNP Q6PVL0 Q6PVL0_9CAUD 2 93 DBREF 8IY1 D 2 93 UNP Q6PVL0 Q6PVL0_9CAUD 2 93 DBREF 8IY1 E 2 93 UNP Q6PVL0 Q6PVL0_9CAUD 2 93 DBREF 8IY1 F 2 93 UNP Q6PVL0 Q6PVL0_9CAUD 2 93 SEQRES 1 A 92 ASP ASN GLN HIS LYS LYS ILE LYS GLY TYR ARG ASP LEU SEQRES 2 A 92 SER GLN GLU GLU ILE ASP MET MET ASN ARG VAL LYS GLU SEQRES 3 A 92 LEU GLY SER GLN PHE GLU LYS LEU ILE GLN ASP VAL SER SEQRES 4 A 92 ASP HIS LEU ARG GLY GLN TYR ASN ALA SER LEU HIS ASN SEQRES 5 A 92 ARG ASP GLU ILE THR ARG ILE ALA ASN ALA GLU PRO GLY SEQRES 6 A 92 ARG TRP LEU ALA ILE GLY LYS THR ASP ILE GLN THR GLY SEQRES 7 A 92 MET MET ALA ILE ILE ARG ALA ILE ALA GLN PRO ASP SER SEQRES 8 A 92 PHE SEQRES 1 B 92 ASP ASN GLN HIS LYS LYS ILE LYS GLY TYR ARG ASP LEU SEQRES 2 B 92 SER GLN GLU GLU ILE ASP MET MET ASN ARG VAL LYS GLU SEQRES 3 B 92 LEU GLY SER GLN PHE GLU LYS LEU ILE GLN ASP VAL SER SEQRES 4 B 92 ASP HIS LEU ARG GLY GLN TYR ASN ALA SER LEU HIS ASN SEQRES 5 B 92 ARG ASP GLU ILE THR ARG ILE ALA ASN ALA GLU PRO GLY SEQRES 6 B 92 ARG TRP LEU ALA ILE GLY LYS THR ASP ILE GLN THR GLY SEQRES 7 B 92 MET MET ALA ILE ILE ARG ALA ILE ALA GLN PRO ASP SER SEQRES 8 B 92 PHE SEQRES 1 C 92 ASP ASN GLN HIS LYS LYS ILE LYS GLY TYR ARG ASP LEU SEQRES 2 C 92 SER GLN GLU GLU ILE ASP MET MET ASN ARG VAL LYS GLU SEQRES 3 C 92 LEU GLY SER GLN PHE GLU LYS LEU ILE GLN ASP VAL SER SEQRES 4 C 92 ASP HIS LEU ARG GLY GLN TYR ASN ALA SER LEU HIS ASN SEQRES 5 C 92 ARG ASP GLU ILE THR ARG ILE ALA ASN ALA GLU PRO GLY SEQRES 6 C 92 ARG TRP LEU ALA ILE GLY LYS THR ASP ILE GLN THR GLY SEQRES 7 C 92 MET MET ALA ILE ILE ARG ALA ILE ALA GLN PRO ASP SER SEQRES 8 C 92 PHE SEQRES 1 D 92 ASP ASN GLN HIS LYS LYS ILE LYS GLY TYR ARG ASP LEU SEQRES 2 D 92 SER GLN GLU GLU ILE ASP MET MET ASN ARG VAL LYS GLU SEQRES 3 D 92 LEU GLY SER GLN PHE GLU LYS LEU ILE GLN ASP VAL SER SEQRES 4 D 92 ASP HIS LEU ARG GLY GLN TYR ASN ALA SER LEU HIS ASN SEQRES 5 D 92 ARG ASP GLU ILE THR ARG ILE ALA ASN ALA GLU PRO GLY SEQRES 6 D 92 ARG TRP LEU ALA ILE GLY LYS THR ASP ILE GLN THR GLY SEQRES 7 D 92 MET MET ALA ILE ILE ARG ALA ILE ALA GLN PRO ASP SER SEQRES 8 D 92 PHE SEQRES 1 E 92 ASP ASN GLN HIS LYS LYS ILE LYS GLY TYR ARG ASP LEU SEQRES 2 E 92 SER GLN GLU GLU ILE ASP MET MET ASN ARG VAL LYS GLU SEQRES 3 E 92 LEU GLY SER GLN PHE GLU LYS LEU ILE GLN ASP VAL SER SEQRES 4 E 92 ASP HIS LEU ARG GLY GLN TYR ASN ALA SER LEU HIS ASN SEQRES 5 E 92 ARG ASP GLU ILE THR ARG ILE ALA ASN ALA GLU PRO GLY SEQRES 6 E 92 ARG TRP LEU ALA ILE GLY LYS THR ASP ILE GLN THR GLY SEQRES 7 E 92 MET MET ALA ILE ILE ARG ALA ILE ALA GLN PRO ASP SER SEQRES 8 E 92 PHE SEQRES 1 F 92 ASP ASN GLN HIS LYS LYS ILE LYS GLY TYR ARG ASP LEU SEQRES 2 F 92 SER GLN GLU GLU ILE ASP MET MET ASN ARG VAL LYS GLU SEQRES 3 F 92 LEU GLY SER GLN PHE GLU LYS LEU ILE GLN ASP VAL SER SEQRES 4 F 92 ASP HIS LEU ARG GLY GLN TYR ASN ALA SER LEU HIS ASN SEQRES 5 F 92 ARG ASP GLU ILE THR ARG ILE ALA ASN ALA GLU PRO GLY SEQRES 6 F 92 ARG TRP LEU ALA ILE GLY LYS THR ASP ILE GLN THR GLY SEQRES 7 F 92 MET MET ALA ILE ILE ARG ALA ILE ALA GLN PRO ASP SER SEQRES 8 F 92 PHE HET 3AM A 101 22 HET 3AM A 102 22 HET 3GP A 103 23 HET 3AM B 101 22 HET 3AM B 102 22 HET 3GP B 103 23 HET 3AM C 101 22 HET 3AM C 102 22 HET 3GP C 103 23 HET 3AM D 101 22 HET 3AM D 102 22 HET 3GP D 103 23 HET 3AM E 101 22 HET 3AM E 102 22 HET 3GP E 103 23 HET 3AM F 101 22 HET 3AM F 102 22 HET 3GP F 103 23 HETNAM 3AM [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-HYDROXY-2- HETNAM 2 3AM (HYDROXYMETHYL)OXOLAN-3-YL] DIHYDROGEN PHOSPHATE HETNAM 3GP GUANOSINE-3'-MONOPHOSPHATE HETSYN 3AM 3'-AMP FORMUL 7 3AM 12(C10 H14 N5 O7 P) FORMUL 9 3GP 6(C10 H14 N5 O8 P) FORMUL 25 HOH *227(H2 O) HELIX 1 AA1 ASN A 3 ILE A 8 5 6 HELIX 2 AA2 SER A 15 SER A 50 1 36 HELIX 3 AA3 ASN A 53 GLU A 64 1 12 HELIX 4 AA4 GLU A 64 GLN A 89 1 26 HELIX 5 AA5 SER B 15 SER B 50 1 36 HELIX 6 AA6 ASN B 53 GLU B 64 1 12 HELIX 7 AA7 GLU B 64 GLN B 89 1 26 HELIX 8 AA8 ASN C 3 ILE C 8 5 6 HELIX 9 AA9 SER C 15 SER C 50 1 36 HELIX 10 AB1 ASN C 53 GLU C 64 1 12 HELIX 11 AB2 GLU C 64 GLN C 89 1 26 HELIX 12 AB3 ASN D 3 ILE D 8 5 6 HELIX 13 AB4 SER D 15 LEU D 51 1 37 HELIX 14 AB5 ASN D 53 GLU D 64 1 12 HELIX 15 AB6 GLU D 64 GLN D 89 1 26 HELIX 16 AB7 GLN E 4 ILE E 8 1 5 HELIX 17 AB8 SER E 15 LEU E 51 1 37 HELIX 18 AB9 ASN E 53 GLU E 64 1 12 HELIX 19 AC1 GLU E 64 GLN E 89 1 26 HELIX 20 AC2 GLN F 4 ILE F 8 1 5 HELIX 21 AC3 SER F 15 SER F 50 1 36 HELIX 22 AC4 ASN F 53 GLU F 64 1 12 HELIX 23 AC5 GLU F 64 GLN F 89 1 26 CRYST1 103.590 103.590 101.436 90.00 90.00 120.00 P 3 2 1 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009653 0.005573 0.000000 0.00000 SCALE2 0.000000 0.011147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009858 0.00000